BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G60010.1 Length=465 Score E Sequences producing significant alignments: (Bits) Value Ahg939034 jgi|Araly1|939034|scaffold_503225.1 556 4e-158 > Ahg939034 jgi|Araly1|939034|scaffold_503225.1 Length=508 Score = 556 bits (301), Expect = 4e-158 Identities = 416/470 (89%), Gaps = 13/470 (3%) Strand=Plus/Plus Query 1 ATGTCGAAGATGGTTATGTTGCTGAGCTCCGATGGTGAATCTTTCCAGGTCGAAGAAGCA 60 |||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||| Sbjct 27 ATGTCGAAGATGGTTATGTTGCAGAGCTCCGATGGTGAATCTTTTCAGGTAGAAGAAGCA 86 Query 61 GTCGCGGTCCAGTCACAGACGATAGCACATATGATTGAAGACGATTGCGTCGCCAATGGA 120 |||||||||||||| |||||||||||||| ||| |||||||||||||||||| ||| | Sbjct 87 GTCGCGGTCCAGTCGCAGACGATAGCACACATGGTTGAAGACGATTGCGTCGGTGATGAA 146 Query 121 GTCCCTATCGCAAACGTTACAGGAGTCATCCTCTCGAAGGTGATCGAGTATTGCAAGAAA 180 |||||||| ||||||| ||||||| || ||||||||||||||||||||||||||||||| Sbjct 147 ATCCCTATCTCAAACGTCACAGGAGCCACCCTCTCGAAGGTGATCGAGTATTGCAAGAAA 206 Query 181 CACGTCGTT--T-CTGATTCACCAACCGAAGAGAGCAAAGACGAACTCAAGAAGTGGGAC 237 ||||| ||| | |||| |||| |||||| ||| | ||||||||||||||||||||| Sbjct 207 CACGTAGTTGCTGCTGAATCACTAACCGAGGAGTGG---GACGAACTCAAGAAGTGGGAC 263 Query 238 GCTGAGTTCATGAAGGCCCTGGAACAGTCGTCGACTCTCTTTGATGTTATGCTGGCTGCG 297 || || ||||||||||| ||||||||||| ||||| ||| ||||||| |||||||| Sbjct 264 GCAGAATTCATGAAGGCGATGGAACAGTCG---ACTCTTTTTCATGTTATTTTGGCTGCG 320 Query 298 AATTACCTAAACATAAAAGACCTGCTTGACCTTGGTTGCCAAACTGTTGCTGACATGATC 357 |||||||||||||| ||||| || |||| ||||||||||||||||||||||||| |||| Sbjct 321 AATTACCTAAACATTAAAGATTTGTTTGATCTTGGTTGCCAAACTGTTGCTGACACGATC 380 Query 358 ACTGGCAAGAA-ACCAGACGAGATTCGTGCACTTCTTGGCATCGAG-AACGATTTTACAC 415 |||| ||||| || ||||||||||||||||||| |||||||| || ||||||||||||| Sbjct 381 ACTGATAAGAATAC-AGACGAGATTCGTGCACTTTTTGGCATC-AGGAACGATTTTACAC 438 Query 416 CGGAGGAGGAAGAGGAGATTCGTAAGGAGAATCAATGGGCTTTTGAATGA 465 ||||||| ||||||||||||||| || ||||||||||||||||||||||| Sbjct 439 CGGAGGAAGAAGAGGAGATTCGTCAGCAGAATCAATGGGCTTTTGAATGA 488 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16826614749 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5