BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G60010.1

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939034 jgi|Araly1|939034|scaffold_503225.1                        556    4e-158


> Ahg939034 jgi|Araly1|939034|scaffold_503225.1
Length=508

 Score =  556 bits (301),  Expect = 4e-158
 Identities = 416/470 (89%), Gaps = 13/470 (3%)
 Strand=Plus/Plus

Query  1    ATGTCGAAGATGGTTATGTTGCTGAGCTCCGATGGTGAATCTTTCCAGGTCGAAGAAGCA  60
            |||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||
Sbjct  27   ATGTCGAAGATGGTTATGTTGCAGAGCTCCGATGGTGAATCTTTTCAGGTAGAAGAAGCA  86

Query  61   GTCGCGGTCCAGTCACAGACGATAGCACATATGATTGAAGACGATTGCGTCGCCAATGGA  120
            |||||||||||||| |||||||||||||| ||| ||||||||||||||||||   ||| |
Sbjct  87   GTCGCGGTCCAGTCGCAGACGATAGCACACATGGTTGAAGACGATTGCGTCGGTGATGAA  146

Query  121  GTCCCTATCGCAAACGTTACAGGAGTCATCCTCTCGAAGGTGATCGAGTATTGCAAGAAA  180
             |||||||| ||||||| ||||||| || |||||||||||||||||||||||||||||||
Sbjct  147  ATCCCTATCTCAAACGTCACAGGAGCCACCCTCTCGAAGGTGATCGAGTATTGCAAGAAA  206

Query  181  CACGTCGTT--T-CTGATTCACCAACCGAAGAGAGCAAAGACGAACTCAAGAAGTGGGAC  237
            ||||| |||  | |||| |||| |||||| ||| |    |||||||||||||||||||||
Sbjct  207  CACGTAGTTGCTGCTGAATCACTAACCGAGGAGTGG---GACGAACTCAAGAAGTGGGAC  263

Query  238  GCTGAGTTCATGAAGGCCCTGGAACAGTCGTCGACTCTCTTTGATGTTATGCTGGCTGCG  297
            || || |||||||||||  |||||||||||   ||||| ||| |||||||  ||||||||
Sbjct  264  GCAGAATTCATGAAGGCGATGGAACAGTCG---ACTCTTTTTCATGTTATTTTGGCTGCG  320

Query  298  AATTACCTAAACATAAAAGACCTGCTTGACCTTGGTTGCCAAACTGTTGCTGACATGATC  357
            |||||||||||||| |||||  || |||| ||||||||||||||||||||||||| ||||
Sbjct  321  AATTACCTAAACATTAAAGATTTGTTTGATCTTGGTTGCCAAACTGTTGCTGACACGATC  380

Query  358  ACTGGCAAGAA-ACCAGACGAGATTCGTGCACTTCTTGGCATCGAG-AACGATTTTACAC  415
            ||||  ||||| || ||||||||||||||||||| |||||||| || |||||||||||||
Sbjct  381  ACTGATAAGAATAC-AGACGAGATTCGTGCACTTTTTGGCATC-AGGAACGATTTTACAC  438

Query  416  CGGAGGAGGAAGAGGAGATTCGTAAGGAGAATCAATGGGCTTTTGAATGA  465
            ||||||| ||||||||||||||| || |||||||||||||||||||||||
Sbjct  439  CGGAGGAAGAAGAGGAGATTCGTCAGCAGAATCAATGGGCTTTTGAATGA  488



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16826614749


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5