BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60020.1
Length=462
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939035 jgi|Araly1|939035|scaffold_503226.1 573 4e-163
Ahg938202 jgi|Araly1|938202|scaffold_502393.1 287 5e-77
> Ahg939035 jgi|Araly1|939035|scaffold_503226.1
Length=510
Score = 573 bits (310), Expect = 4e-163
Identities = 416/467 (89%), Gaps = 7/467 (1%)
Strand=Plus/Plus
Query 1 ATGTCGACG-A-A-GATCATGTTGAAGAGCTCCGATGGTAAATCGTTCGAGATCGACGAA 57
||||||| | | | |||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 23 ATGTCGAAGAAGATGATCGTGTTGAAGAGCTCCGATGGTAAATCGTTCGAGGTCGACGAA 82
Query 58 GACGTGGCACGCAAATCAATCG-CGATAAACCATATGGTTGAGGACGGCTGCGCC-ACTG 115
| |||||||||||||||| | | ||||||| |||||| |||||||| |||||| | |
Sbjct 83 GCCGTGGCACGCAAATCAGT-GACGATAAATAATATGGCTGAGGACGAATGCGCCGA-TA 140
Query 116 ATGTAATACCGCTTCGAAACGTCACAAGCAAGATTCTCAAGATTGTGATCGATTATTGCG 175
||| ||| ||||||| |||||||||||| ||||| |||||||||||||||| ||||||
Sbjct 141 ATGGAATCCCGCTTCCAAACGTCACAAGTAAGATCCTCAAGATTGTGATCGCGTATTGCA 200
Query 176 AGAAGCACGTCAAGAGCAAAGAAGAAGAAGATCTCAAGGAGTGGGACGCTGATTTCATGA 235
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 201 AGAAGCACGTCGAGAGCAACGAAGAAGAAGATCTCAAGGAGTGGGACGCTGATTTCATGA 260
Query 236 AGACGATCGAAACAACCATTCTCTTTGATGTTATGATGGCTGCGAATTATCTCAATATTC 295
||| ||||||| || |||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 261 AGAAGATCGAACCATCCATTCTCTTTGATGTTATGATTGCTGCGAATTATCTCAATATCC 320
Query 296 AAAGCCTTCTTGATCTCACATGTAAAACTGTCTCGGATTTGCTCCAGGCTGATTTGCTCT 355
|||||||||||||||||||||| |||| ||| | | |||||||||||||||||||||||
Sbjct 321 CAAGCCTTCTTGATCTCACATGTCAAACAGTCGCTGCTTTGCTCCAGGCTGATTTGCTCT 380
Query 356 CAGGGAAAACTCCAGATGAGATTCGCGCGCACTTCAACATCGAGAACGATCTAACAGCAG 415
|||| |||||||||| |||||||||| | | ||||||||||||||||||| ||||| |||
Sbjct 381 CAGGAAAAACTCCAGCTGAGATTCGCACACGCTTCAACATCGAGAACGATTTAACACCAG 440
Query 416 AGGAAGTAGCTAAGATTCGTGAGGAGAATCAATGGGCTTTTCAATGA 462
|||||||||| |||||||| |||||||||| ||||||||| |||||
Sbjct 441 CGGAAGTAGCTGAGATTCGTAAGGAGAATCAGTGGGCTTTTGAATGA 487
> Ahg938202 jgi|Araly1|938202|scaffold_502393.1
Length=464
Score = 287 bits (155), Expect = 5e-77
Identities = 287/347 (83%), Gaps = 24/347 (7%)
Strand=Plus/Plus
Query 116 ATGTAATACCGCTTCGAAACGTCACAAGCAAGATTCTCAAGATT-GTGATCGATTATTGC 174
||| ||| ||||||| |||||||||||||||||| ||| | || || || || ||||||
Sbjct 110 ATGGAATCCCGCTTCCAAACGTCACAAGCAAGATCCTCTTG-TTGGTTATTGAGTATTGC 168
Query 175 GAGAAGCA---CGTCAAGAGCAAAGAAGAAGAAGATCTCAAGGAGTGGGACGCTGATTTC 231
||||||| |||| ||| | ||||||||||| |||||||| |||||||| |||| |||
Sbjct 169 AAGAAGCACGTCGTCGAGAACGAAGAAGAAGAATATCTCAAGAAGTGGGACACTGAATTC 228
Query 232 ATGAAGACGATCGAAACAA-CCATTCTCTTTGATGTTATGATGGCTGCGAATTATCTCAA 290
||||||| ||| | ||||| | ||| ||||||||||||||||||||||||||||||||||
Sbjct 229 ATGAAGAAGAT-GGAACAATCGATTGTCTTTGATGTTATGATGGCTGCGAATTATCTCAA 287
Query 291 TATTCAAAGCCTTCTTGATCTCACATGTAAAACTGTCTCGGATTTGCTCCAGGCTGATTT 350
||| ||||||||| |||||||||| ||||||||||| | | | | | | |||
Sbjct 288 TATCCAAAGCCTTATTGATCTCACGTGTAAAACTGT-T-GC-T--G----A---T--TTT 333
Query 351 GCTCTCAGGGAAAACTCCAGATGAGATTCGCGCGCACTTCAACATCGAGAACGATCTAAC 410
|||||||| ||||||||||| ||||||||||| ||||||| |||||||||||| | ||
Sbjct 334 -CTCTCAGGAAAAACTCCAGAGGAGATTCGCGCATACTTCAAGATCGAGAACGATTTTAC 392
Query 411 AGCAGAGGAAGTAGCTAAGATTCGTGAGG-AGAATCAATGGGCTTTT 456
| ||||||||| |||| |||||| | ||| |||||||||||||||||
Sbjct 393 ACCAGAGGAAGAAGCTGAGATTC-TCAGGGAGAATCAATGGGCTTTT 438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16712147982
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5