BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60030.1
Length=3148
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939036 jgi|Araly1|939036|scaffold_503227.1 4213 0.0
Ahg483883 jgi|Araly1|483883|fgenesh2_kg.4__2943__AT2G47070.1 1487 0.0
> Ahg939036 jgi|Araly1|939036|scaffold_503227.1
Length=2811
Score = 4213 bits (2281), Expect = 0.0
Identities = 2645/2817 (94%), Gaps = 40/2817 (1%)
Strand=Plus/Plus
Query 146 TTGTAACT-GGGTTTGTGATGGAAGCTAGAATTGAAGGTGAAGTAGAAGGTCACAGTTTA 204
|||||| | | |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 4 TTGTAA-TCGAGTTTGTGATGGAAGCTAGAATTGAAGGTGAAGAAGAAGGTCACAGTTTA 62
Query 205 GAATACGGGTTTAGTGGTAAAAGGAGTGTAGAGTGGGATTTGAATGATTGGAAATGGAAT 264
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 GAATATGGGTTTAGTGGTAAAAGGAGTGTAGAGTGGGATTTGAATGATTGGAAATGGAAT 122
Query 265 GGTGATCTCTTCGTTGCTACACAGCTGAATCACGGCTCATCCAACAGCTCTTCTACGTGC 324
|||||||| ||||||||||||||| ||||||| |||||||| ||||| ||||||||||||
Sbjct 123 GGTGATCTATTCGTTGCTACACAGTTGAATCATGGCTCATCGAACAGTTCTTCTACGTGC 182
Query 325 TCTGATGAAGGAAATGTTGAAATCATggagagaaggaggatagagatggagaagaagaag 384
|||||||||| |||||| |||||||| ||| | | ||| ||||||| |||
Sbjct 183 TCTGATGAAGCAAATGTCGAAATCAT--------GGA-G--A-AGA---AGAAGAA-AAG 226
Query 385 aaaagaagagCTGTTACTGTGGTAGCAATGGAAGAAGATAACTTGA---A---AGATGAT 438
|| |||||||||||||| |||||||||||||||||||||||| | ||||||
Sbjct 227 ---AG--GAGCTGTTACTGTGATAGCAATGGAAGAAGATAACTTGAGGGATGGTGATGAT 281
Query 439 GATGCTCATAGACTTACTCTGAATCTTGGTGGTAATAATATTGAGGGGAATGGTGTGAAA 498
|||||||||||||||||| ||||||||||||| |||||||||||| ||||||| ||||
Sbjct 282 GATGCTCATAGACTTACTTTGAATCTTGGTGG---TAATATTGAGGGAAATGGTGCGAAA 338
Query 499 AAGACGAAACTTGGAGGAGGGATTCCGAGTCGGGCGATTTGTTGTCAGGTAGACAACTGT 558
|||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||
Sbjct 339 AAGACGAAACTTGGAGGAGGGATTCCGAGTCGGGCGATTTCTTGTCAGGTGGAGAACTGT 398
Query 559 GGAGCTGATTTAAGCAAAGTTAAGGATTATCATAGACGTCATAAGGTCTGTGAGATTCAT 618
|||| |||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 399 GGAGTTGATTTAAGCAAGGTTAAGGATTATCATAGACGTCATAAGGTTTGTGAGATGCAT 458
Query 619 TCTAAAGCTACTACTGCACTTGTTGGAGGAATTATGCAGCGGTTTTGTCAGCAATGTAGT 678
||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 459 TCTAAAGCTACTAGTGCACTTGTTGGAGGAATTATGCAGAGGTTTTGTCAGCAGTGTAGT 518
Query 679 AGGTTTCATGTGCTTGAAGAGTTTGATGAGGGAAAGAGAAGTTGCCGTAGACGTTTGGCT 738
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 519 AGGTTTCATGTGCTTGAAGAGTTTGATGAAGGAAAGAGAAGTTGTCGTAGACGTTTGGCT 578
Query 739 GGGCATAATAAGCGTAGAAGAAAAGCAAATCCTGATACTATAGGCAATGGGACTTCTATG 798
|||||||||||||||||||| ||||||||||||||||||||||||||||||| | || ||
Sbjct 579 GGGCATAATAAGCGTAGAAGGAAAGCAAATCCTGATACTATAGGCAATGGGAATCCTTTG 638
Query 799 AGTGATGATCAAACAAGCAATTATATGTTGATTACTCTCTTGAAGATACTCTCCAATATT 858
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 639 AGTGATGATCAAACAAGCAATTATCTGTTGATTACTCTCTTGAAGATACTCTCCAAT-TT 697
Query 859 -CATTCGAATCAGTCGGATCAAACGGGTGATCAGGATCTACTGTCTCATCTTCTAAAGAG 917
||||||||||| || ||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 698 ACATTCGAATCAATCAGATCAAACGGGTGATCAGGATCTGTTGTCTCAACTTCTAAAGAG 757
Query 918 CCTTGTAAGCCAAGCTGGTGAACATATAGGGAGGAATTTAGTTGGGCTTCTACAGGGTGG 977
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 758 TCTTGTAAGCCAAGCTGGTGAACATATAGGGAAGAATTTAGTTGGGCTTCTACAGGGTGG 817
Query 978 AGGAGGACTCCAGGCTTCTCAAAATATTGGAAACTTATCCGCTTTGCTCTCACTCGAGCA 1037
||||||| ||||||||||||||||||||||||||| || | |||||| |||||||||||
Sbjct 818 AGGAGGAGTCCAGGCTTCTCAAAATATTGGAAACTCGTCGGATTTGCTTTCACTCGAGCA 877
Query 1038 AGCCCCTCGAGAGGATATAAAACATCATTCAGTGTCTGAAACGCCTTGGCAAGAAGTGTA 1097
||||||||||||| ||||||| |||||||||||| ||||||| | ||||||||||||||
Sbjct 878 AGCCCCTCGAGAGAATATAAAGCATCATTCAGTGCCTGAAACACATTGGCAAGAAGTGTT 937
Query 1098 TGCCAATAGTGCTCAAGAGAGAGTTGCCCCGGATAGGTCC-GAGAAACAAGTCAAAGTGA 1156
||||||| |||||||||||| || ||||||||||||| || |||||| |||||||| |||
Sbjct 938 TGCCAATGGTGCTCAAGAGACAGCTGCCCCGGATAGG-CCGGAGAAAGAAGTCAAAATGA 996
Query 1157 ATGATTTTGATTTGAATGACATCTACATAGACTCAGATGATACCACAGATATAGAGAGAT 1216
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 997 ATGATTTTGATTTGAATGATATCTACATAGACTCAGATGATACTACAGATATAGAGAGAT 1056
Query 1217 CATCACCTCCTCCGACAAATCCAGCTACTAGTTCTCTTGATTATCATCAAGACTCGCGTC 1276
||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1057 CATCAGCTCCTCCCACAAATCCAGCAACTAGTTCTCTTGATTATCATCAAGACTCGCGTC 1116
Query 1277 AGTCTAGTCCACCTCAAACTAGTAGGAGGAATTCAGATTCAGCTTCTGACCAATCACCTT 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 AGTCTAGTCCACCTCAAACTAGTAGGAGGAATTCAGATTCAGCTTCTGACCAATCACCTT 1176
Query 1337 CAAGTTCCAGTGGAGATGCACAGAGCCGTACTGATCGGATTGTGTTCAAACTCTTTGGGA 1396
|||||||| |||||||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 1177 CAAGTTCCGGTGGAGATGCTCAGAGCCGTACTGACCGGATTGTGTTCAAACTATTTGGGA 1236
Query 1397 AAGAGCCGAATGATTTTCCAGTTGCCTTACGAGGACAGATTCTTAACTGGTTAGCGCATA 1456
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1237 AAGAGCCGAATGATTTTCCAGTTGCCTTACGAGGACAGATTTTTAACTGGTTAGCTCATA 1296
Query 1457 CTCCAACTGATATGGAGAGCTACATTAGACCTGGTTGTATCGTTTTGACCATTTATCTTC 1516
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1297 CTCCAACTGACATGGAGAGCTATATTAGACCTGGTTGTATCGTTTTGACCATTTATCTTC 1356
Query 1517 GTCAAGATGAAGCTTCTTGGGAAGAACTTTGTTGTGATCTGAGTTTCAGCTTGAGGAGGC 1576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1357 GTCAAGATGAAGCTTCTTGGGAAGAACTTTGTTGTGATCTGAGTTTCAGCTTGAGGAGGC 1416
Query 1577 TTCTAGATCTTTCAGATGATCCTTTATGGACTGATGGGTGGCTTTATCTTAGGGTGCAAA 1636
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1417 TTCTAGATCTCTCAGATGATCCTTTATGGACTGATGGGTGGATTTATCTTAGGGTGCAAA 1476
Query 1637 ACCAACTCGCATTTGCGTTTAATGGTCAGGTTGTTCTTGACACATCTTTACCTCTGAGAA 1696
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1477 ACCAACTCGCATTTGCGTTTGATGGTCAGGTTGTTCTTGACACATCTTTACCTCTGAGAA 1536
Query 1697 GCCATGATTATAGCCAAATCATTACTGTTAGACCACTTGCTGTAACAAAGAAAGCTCAAT 1756
||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||
Sbjct 1537 GCCATGATTATAGCCAAATCATTGCTGTTAGACCGCTTGCTGTAACAAGGAAAGCTCAAT 1596
Query 1757 TTACAGTAAAAGGCATCAATCTCCGTCGACCTGGCACAAGGTTACTTTGTACTGTTGAAG 1816
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1597 TTACAGTAAAAGGCATCAATCTCCGTCGACCTGGCACAAGGTTACTTTGTGCTGTAGAAG 1656
Query 1817 GAACACACTTGGTTCAGGAAGCAACACAAGGAGGGATGGAGGAGAGAGATGATCTAAAGG 1876
||||| ||||||||||||||||||||||||||| |||||| |||||||||||||| | ||
Sbjct 1657 GAACATACTTGGTTCAGGAAGCAACACAAGGAGTGATGGAAGAGAGAGATGATCTTAGGG 1716
Query 1877 AGAATAATGAGATTGATTTTGTCAATTTTTCCTGTGAGATGCCTATTGCAAGTGGTCGAG 1936
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1717 TGAATAATGAGATTGATTTTGTCAAATTTTCCTGTGAGATGCCTATTGCAAGTGGTCGAG 1776
Query 1937 GTTTCATGGAAATTGAAGACCAAGGTGGGCTAAGCAGTAGTT-TCTTCCCTTTCATAGTA 1995
||||||||||||||||||| ||||| |||||||||||||||| | |||||||||||||||
Sbjct 1777 GTTTCATGGAAATTGAAGATCAAGGCGGGCTAAGCAGTAGTTAT-TTCCCTTTCATAGTA 1835
Query 1996 TCTGAAGACGAAGATATTTGTTCTGAAATCCGAAGACTCGAAAGCACATTAGAGTTTACT 2055
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1836 TCTGAGGACGAAGATGTTTGTTCTGAAATCCGAAGACTCGAAAGCACATTAGAGTTTACC 1895
Query 2056 GGAACTGATTCTGCAATGCAAGCAATGGATTTCATCCACGAAATCGGTTGGCTTCTACAC 2115
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1896 GGTACTGATTCTGCAATGCAAGCAATGGATTTCATCCACGAAATCGGTTGGCTTCTTCAC 1955
Query 2116 AGAAGTGAACTCAAGTCAAGACTTGCAGCATCAGATCATAATCCAGAGGATCTGTTTTCT 2175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1956 AGAAGTGAACTCAAGTCAAGACTTGCAGCATCAGATCATAATCCAGAGGATCTGTTTCCT 2015
Query 2176 TTAATACGGTTTAAGTTTCTAATAGAGTTCTCAATGGACCGGGAATGGTGCTG-TGTGAT 2234
||||||||||||||||||||| |||||| |||||||||||||||||||| || ||||||
Sbjct 2016 TTAATACGGTTTAAGTTTCTAGTAGAGTACTCAATGGACCGGGAATGGTA-TGCTGTGAT 2074
Query 2235 GAAGAAGTTATTGAATATTCTATTCGAAGAAGGCACTGTTGATCCATCTCCTGATGCTGC 2294
|||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2075 CAAGAAGCTATTAAATATACTATTCGAAGAAGGCACTGTTGATCCATCTCCTGATGCTGC 2134
Query 2295 GTTATCAGAACTGTGTCTTCTTCACAGAGCCGTGAGGAAAAATTCAAAACCCATGGTTGA 2354
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2135 GTTATCAGAACTGTGTCTTCTTCACAGAGCCGTAAGGAAAAATTCAAAACCCATGGTTGA 2194
Query 2355 GATGCTTCTTAGATTCAGTCCCAAGAAGAAGAATCAGACATTAGCCGGTTTGTTTAGACC 2414
||||||||| ||||||| ||||||||||||||| ||||||| | ||||||||||||||||
Sbjct 2195 GATGCTTCTAAGATTCATTCCCAAGAAGAAGAACCAGACATCATCCGGTTTGTTTAGACC 2254
Query 2415 CGATGCAGCTGGTCCAGGCGGTTTAACACCGCTTCACATTGCAGCTGGTAAAGACGGTTC 2474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2255 CGATGCAGCTGGTCCAGGCGGTTTAACACCGCTTCACATTGCAGCTGGTAAAGACGGGTC 2314
Query 2475 AGAAGATGTGTTGGATGCCCTGACTGAGGATCCTGGAATGACTGGTATTCAAGCCTGGAA 2534
|||||||||||||||||| || ||||||||||| | ||||| |||||||||||| |||||
Sbjct 2315 AGAAGATGTGTTGGATGCTCTTACTGAGGATCCCGAAATGATTGGTATTCAAGCTTGGAA 2374
Query 2535 AAATTCCCGGGACAATACCGGATTCACACCAGAAGACTATGCACGTTTACGAGGTCACTT 2594
| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2375 GATTTCCCGGGACAATACCGGATTCACACCAGAAGACTACGCACGTTTACGAGGTCACTT 2434
Query 2595 CTCGTATATTCATCTGGTGCAACGGAAACTCAGTCGGAAACCAATCGCCAAAGAACACGT 2654
||| |||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||
Sbjct 2435 CTCATATATTCATCTGGTGCAACGGAAACTCAATCGGAAACCAACCGCCGAAGAACACGT 2494
Query 2655 GGTGGTCAACATTCCTGAGTCTTTCAACATTGAGCACAAACAAGAAAAGAGGAGTCCAAT 2714
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2495 GGTGGTCAACATTCCTGAGTCTTTCAACATTGAGCACAAACAAGAAAAGAGGAGTCTAAT 2554
Query 2715 GGATTCTTCAAGCTTGGAGATAACACAGATAAACCAATGTAAGCTCTGTGATCACAAACG 2774
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 2555 GGATTCTTCAAGCTTGTCGATAAGTCAGATAAACCAATGTAAGCTCTGTGATCACAAACG 2614
Query 2775 TGTGTTTGTCACAACGCACCACAAGTCTGTTGCCTACAGGCCAGCAATGCTTTCGATGGT 2834
|||||||||||| ||||| ||||||||| |||||||||||||||| ||||||||||||||
Sbjct 2615 TGTGTTTGTCACCACGCAACACAAGTCTCTTGCCTACAGGCCAGCGATGCTTTCGATGGT 2674
Query 2835 AGCGATAGCAGCGGTTTGCGTTTGTGTCGCTCTTTTGTTCAAGAGTTGCCCGGAAGTGCT 2894
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2675 AGCGATAGCAGCGGTTTGCGTTTGTGTCGCCCTTTTGTTCAAGAGTTGCCCGGAAGTGCT 2734
Query 2895 ATATGTCTTTCAGCCATTCAGGTGGGAATTACTTGAGTATGGAACAAGCTAGTAAAA 2951
||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 2735 ATATGTCTTTCAGCCGTTCAGGTGGGAATTGCTTGAATATGGAACAAGCTAGTAAAA 2791
> Ahg483883 jgi|Araly1|483883|fgenesh2_kg.4__2943__AT2G47070.1
Length=3341
Score = 1487 bits (805), Expect = 0.0
Identities = 1955/2478 (79%), Gaps = 208/2478 (8%)
Strand=Plus/Plus
Query 540 TTGTCAGGTAGACAACTGTGGAGCTGAT-TTAAGCAAAGTTAAGGATTATCATAGACGTC 598
||||||||| || ||||||| ||||||| || || |||||||||||||||||||||||||
Sbjct 726 TTGTCAGGTGGAAAACTGTGAAGCTGATCTT-AGTAAAGTTAAGGATTATCATAGACGTC 784
Query 599 ATAAGGTCTGTGAGATTCATTCTAAAGCTACTACTGC-ACTTGTTGGAGGAAT-TATGCA 656
|||||||||||||||| ||||| || ||||||| ||| | |||| ||||| || | ||||
Sbjct 785 ATAAGGTCTGTGAGATGCATTCCAAGGCTACTAGTGCCA-TTGTCGGAGGTATCT-TGCA 842
Query 657 GCGGTTTTGTCAGCAATGTAGTAGGTTTCATGTGCTTGAAGAGTTTGATGAGGGAAAGAG 716
||| ||||||||||||||||||||||| ||| | ||| | ||||||||||| ||||||||
Sbjct 843 GCGCTTTTGTCAGCAATGTAGTAGGTTCCATCTTCTTCAGGAGTTTGATGAAGGAAAGAG 902
Query 717 AAGTTGCCGTAGACGTTTGGCTGGGCATAATAAGCGTAGAAG-AAAAGCAAATCCTGATA 775
|||||| |||||||||||||||||||||||||| ||||| || |||| |||||||||| |
Sbjct 903 AAGTTGTCGTAGACGTTTGGCTGGGCATAATAAACGTAGGAGGAAAA-CAAATCCTGA-A 960
Query 776 CTATAG-GC-AATGGGACTTCTATGAGTGATGATCAAACAAGCAATTATATGTTGATTAC 833
| | | || || |||| | ||| | ||||||||| ||||||| ||| | |||||||
Sbjct 961 CC-TGGCGCTAACGGGAATCCTA-G--TGATGATCAGTCAAGCAACTATCTCTTGATTAG 1016
Query 834 TCTCTTGAAGATACTCTCCAATATTCATTCGAATCAGTCGGATCAAACGGGTGATCAGGA 893
|||||||||||||||||||||||| ||| || || | | | ||| |||||| ||
Sbjct 1017 TCTCTTGAAGATACTCTCCAATATGCAT---AACCA-T---A-C---CGG-TGATCAAGA 1064
Query 894 TCT-ACTGTCTCATCTTCTAAAGAGCCTTGTAAGCCAAGCTGGTGAACA-TATAGGGAGG 951
| | | ||||||||||||| |||||||| |||||||| ||||||||||| | ||||||
Sbjct 1065 TTTGA-TGTCTCATCTTCTGAAGAGCCTCGTAAGCCATGCTGGTGAACAGT-TAGGGAAA 1122
Query 952 AATTTAGTTGGGCTTCTAC-AGGGTGGAGGAGGACTCCAGGCTTC-TCAAAATATTGGAA 1009
|| ||||||| ||||| | | |||||| ||| ||| ||| | ||| ||||||||
Sbjct 1123 AACTTAGTTGAACTTCTTCTACAA-GGAGGAT--CTCAAGG-TTCCTTAAA-TATTGGAA 1177
Query 1010 ACTTATCCGCTTTGCTCTC-ACTCGAGCAAGCCCCTCGAGAGGATATAAAACATCATTCA 1068
||| | |||||||| | | | |||||||| |||| ||||||| |||| || | |||
Sbjct 1178 ACT---CGGCTTTGCT-TGGAATTGAGCAAGCTCCTCAAGAGGATTTAAAGCAACTTTC- 1232
Query 1069 GTGTCTGAAACG--CCTTGGCAAGAAGTGTATGCCAATAGTGCTCAAGAGAGAGTTGCCC 1126
| || ||||| ||| ||||||| | | | | | | || | |||| ||
Sbjct 1233 G-GT---AAACGTACCTCGGCAAGATGGG-A--C-A---G--CT-ACC-GAGA----CCA 1273
Query 1127 CGGATAGGTCCGAGAAACAAGTCAAAGTGAATGATTTTGATTTGAATGACATCTACATAG 1186
| || | || |||||||||||| |||||||||||||||||||||| || || ||||
Sbjct 1274 -G-AT----CAGAAAAACAAGTCAAAATGAATGATTTTGATTTGAATGATATTTATATAG 1327
Query 1187 ACTCAGATGATACCACAGATATAGAGAGATCATCACCTCCTCCGACAAATCCAGCTACTA 1246
|||||||||| | |||||||| || ||||| || | |||||| || |||||||| || |
Sbjct 1328 ACTCAGATGA--C-ACAGATATCGAAAGATC-TC-C-TCCTCCAACCAATCCAGCAACCA 1381
Query 1247 GTTCTCTTGATTATCAT-CAAG-ACTCGCGTCAGTCTAGTCCACCTCAAACTAGTAGGAG 1304
||||||||||||||| | || | | | | |||||||||||||||||| || |||||||
Sbjct 1382 GTTCTCTTGATTATCCTTCATGGA-TA-CATCAGTCTAGTCCACCTCAGACAAGTAGGA- 1438
Query 1305 GAATTCAGATTCAGCTTCTGACCAATCACCTTCAAGTTCCAGTGGAGATGCACAGA-GCC 1363
| |||||||||||| |||||||| ||||| ||||||||||||| |||||| |||| ||
Sbjct 1439 -A-TTCAGATTCAGCATCTGACCAGTCACCGTCAAGTTCCAGTGAAGATGCTCAGATGC- 1495
Query 1364 GTACTGATCGGATTGTGTTCAAACTCTTTGGGAAAGAGCCGAATGATTTTCC-AGTTGCC 1422
| || | ||||||||||||||||| |||||||||||||| ||||| ||||| | ||| |
Sbjct 1496 GCACAGGCCGGATTGTGTTCAAACTATTTGGGAAAGAGCCAAATGAATTTCCTA-TTGTC 1554
Query 1423 TTACGAGGACAGATTCTTAACTGGTTAGCGCATACTCCAACTGATATGGAGAGCTACATT 1482
|| || |||||||||||| |||||||| |||||| ||||||||| |||||||||||||||
Sbjct 1555 TTGCGTGGACAGATTCTTGACTGGTTATCGCATAGTCCAACTGACATGGAGAGCTACATT 1614
Query 1483 AGACCTGGTTGTATCGTTTTGACCATTTATCTTCGTCAAGATGAAGCTTCTTGGGAAGAA 1542
|| ||||| |||||||| |||||||| ||||||||||||| |||| || ||||||||||
Sbjct 1615 AGGCCTGGCTGTATCGTATTGACCATCTATCTTCGTCAAGCTGAAACTGCTTGGGAAGAG 1674
Query 1543 CTTTGTTGT-GATCTGAGTTTCAGCTTGAGGAGGCTTCTAGATCTTTCAGATGATCCTTT 1601
|| | | |||||| |||| ||||| |||| |||||||||||| || |||||||| ||
Sbjct 1675 CTCTCA-GACGATCTGGGTTTTAGCTTAAGGAAGCTTCTAGATCTCTCTGATGATCCCTT 1733
Query 1602 ATGGACTGA-TGGGTGGCTTTATCTTAGGGTGCAAAACCAACTCGCATTTGCGTTTAATG 1660
||||| | ||| ||| ||||| ||||||||||||||||||| ||||||| | ||| |
Sbjct 1734 GTGGACA-ACTGGATGGATTTATGTTAGGGTGCAAAACCAACTTGCATTTGTATATAACG 1792
Query 1661 GTCAGGTTGTTCTTGACACATCTTTACCTCTGAGAAGCCATGATTATAGCCAAATCATTA 1720
||||||||||| ||||||| || || ||| | | ||| | |||||||||||| |||||||
Sbjct 1793 GTCAGGTTGTTGTTGACACTTCATTGCCTATAAAAAGTCGTGATTATAGCCACATCATTA 1852
Query 1721 -CTGTTAGACCACTTGCTGTAACA--AA-GA--AAG-CTCAATTTACAGTAAAAGGCATC 1773
| |||| ||| |||||| || | || | ||| ||||||||||||| ||||||||
Sbjct 1853 AC-GTTAAACCGCTTGCTATAGCTGCAACGGGGAAGGCTCAATTTACAGTTAAAGGCATT 1911
Query 1774 AATCTCCGTCGACCTGGCACAAGGTTACTTTGTACTGTTGAAGGAACACACTTGGTTCAG 1833
||||||||||||| |||||||||||| |||||| |||||||||||| | ||||| |||||
Sbjct 1912 AATCTCCGTCGACGTGGCACAAGGTTGCTTTGTGCTGTTGAAGGAAAATACTTGATTCAG 1971
Query 1834 GAAGCAACACAAGGAGG-GATGGA--GGAGAGA--GATGATCTAAAGGAGAATAATGAGA 1888
||| ||||||| | | || | | || |||| |||||||| ||||||||||||||||
Sbjct 1972 GAAACAACACACG-ACTCGACG-ACCGGGGAGAATGATGATCTCAAGGAGAATAATGAGA 2029
Query 1889 TTGATT---T-TGTCAATTTTTCCTGTGAGATGCCTATTGCAAGTGGTCGAGGTT-TCAT 1943
||| || | ||| || ||||| ||||| |||||||| | ||||||||||| | | ||
Sbjct 2030 TTG-TTGAGTGTGTAAACTTTTCTTGTGATATGCCTATAACGAGTGGTCGAGGATAT-AT 2087
Query 1944 GGAAATTGAAGACCAAGGTGGGCTAAGCAGTAGTTTCTTCCCTTTCATAGTATCT-GAAG 2002
||| |||||||||||||| || ||||| || |||||||||||| |||| | | ||||
Sbjct 2088 GGAGATTGAAGACCAAGGA---CTCAGCAGCAGCTTCTTCCCTTTCTTAGT-TGTTGAAG 2143
Query 2003 ACGAAGATATTTGTTCTGAAATCCGAAGACTCGAAAGCACATTAGAGTTTACTGGAACTG 2062
| || ||| |||||||||||||||| | ||| |||| |||||||||||| ||||||||||
Sbjct 2144 ATGATGATGTTTGTTCTGAAATCCGTATACTTGAAACCACATTAGAGTTCACTGGAACTG 2203
Query 2063 ATTCTGC-AATGCAAGCAATGGATTTCATCCACGAAATCGGTTGGCTTCTACACAGAAGT 2121
||||||| || |||||| ||||||||||| || ||||||||||||||||| |||||||||
Sbjct 2204 ATTCTGCTAA-GCAAGCTATGGATTTCATTCATGAAATCGGTTGGCTTCTTCACAGAAGT 2262
Query 2122 GAACTCAAGTCAAGACTTGCAGCATCAGATC-ATAATCCAGAGGATCTGTTTTCTTTAAT 2180
|| | | ||| | |||||| | | |||||||| | | | || | |||||
Sbjct 2263 -AA-----G-C-----TTGGGGAATCAGACCCA-AATCCAGACG-T-T-TTCCCATTAAT 2306
Query 2181 ACGGTTTAAGTTTCTAATAGAGTTCTCAATGGACCGGGAATGGTGCTG-TGTGATGAAGA 2239
||| || ||| ||||| |||||||||||||| || || |||||| | |||||| | ||
Sbjct 2307 ACGCTTCCAGTGGCTAATCGAGTTCTCAATGGATCGAGAGTGGTGC-GCTGTGATCA-GA 2364
Query 2240 A-GTTATTGAATAT-T-CTATTCGAAGAAGGCACT-GTTGA-TC--CATC-TCCTG-A-T 2289
| | |||| || || | || || || | || | | | ||| | | || |||| | |
Sbjct 2365 AAGCTATTAAACATGTTCT-TT-GATGGAG-CTGTTGGTGAATTTTCTTCCTCCTCTAAT 2421
Query 2290 GCTGCGTTATCAGAACTGTGTCTTCTTCACAGAGCCGTGAGGAAAAATTCAAAACCCATG 2349
|| | ||||||||||||| |||||||||||||||||||||||||| || || || |||
Sbjct 2422 GCCACACTATCAGAACTGTGCCTTCTTCACAGAGCCGTGAGGAAAAACTCTAAGCCTATG 2481
Query 2350 GTTGAGATGCTTCTT-AGAT-TCAGT-CCCAAGAAGAAGAATCAGACATTAGCCGGTTTG 2406
|| || ||||| ||| |||| | || |||||| | | || ||| | ||| || |
Sbjct 2482 GTCGAAATGCT-CTTGAGATAT--GTTCCCAAGCA-AC-AA--AGAAAC-AGC---TT-G 2529
Query 2407 TTTAGACCCGATGCAGCTGGTCCAGGCGGTTTAACACCGCTTCACATTGCAGCTGGTAAA 2466
|||||||||||||| |||||||||| ||| |||||||| ||||| |||||||| ||||||
Sbjct 2530 TTTAGACCCGATGCTGCTGGTCCAGCCGGCTTAACACCTCTTCATATTGCAGCCGGTAAA 2589
Query 2467 GACGGTTCAGAAGATGTGTTGGATGCCCTGACTGAGGATCCTGGAATGACTGGT-ATTCA 2525
|||||||||||||||||||||||||| || || || ||||||| |||| ||| ||| |
Sbjct 2590 GACGGTTCAGAAGATGTGTTGGATGCGCTAACAGAAGATCCTGCAATGG-TGGGGATTGA 2648
Query 2526 AGCCTGGAAAA-ATTCCCGGGACAATACCGGATTCACACCAGAAGACTATGCACGTTTAC 2584
||| ||||| | || | || |||| || || ||||||||||||||||| ||||| ||||
Sbjct 2649 AGCGTGGAAGACAT-CTCGAGACAGCACAGGCTTCACACCAGAAGACTACGCACGCTTAC 2707
Query 2585 GAGGTCACTTCTCGTATATTCATCTGG-TGCAACGGAA-ACTCAGTCGGAAAC-CAATCG 2641
| ||||||||||| || || || || | | ||||| || | ||| | ||| ||| |
Sbjct 2708 GCGGTCACTTCTCATACATCCA-CTTGATTCAACGCAAGA-TCAATAA-AAAGTCAA-CA 2763
Query 2642 CCA-AAGAACACGTGGTGGTCAACATTCCTGAGTCTTTC--A-ACATTGAGCACAAACAA 2697
| |||| || || ||||||||||| || | |||||| | ||| ||||| ||| ||
Sbjct 2764 ACTGAAGATCATGTTGTGGTCAACATCCCAGTTTCTTTCTCAGACAGAGAGCAGAAAGAA 2823
Query 2698 G-AAAAG-AGGAGTCCAATGGATTCTTCAAGC-TTGGAGAT-AACACAGATAAACCAATG 2753
|||| ||| ||| |||| ||||| || |||||||| ||| ||| | ||| ||
Sbjct 2824 CCAAAATCAGG--TCCGATGG---CTTCA-GCCTTGGAGATTAAC-CAGCTT--CCA-TG 2873
Query 2754 TAAGCTCTGTGATCACAAACGTG-TGTTTGTCACAACGCACCACAAGTCTGTTGCCTACA 2812
||||||||||| || |||| || ||| || ||||| || || |||||| || ||||
Sbjct 2874 CAAGCTCTGTGACCATAAAC-TGGTGTATGGGACAAC--ACG-CAGGTCTGTAGCGTACA 2929
Query 2813 GGCCAGCAATGCTT-TCGATGGTAGCGATAGCAGCGGTTTGCGTTTGTGTCGCTCTTTTG 2871
| ||||| ||| || || ||||| ||||| || ||||||||||| ||||| || ||| ||
Sbjct 2930 GACCAGCTATG-TTGTCAATGGTGGCGATTGCTGCGGTTTGCGTCTGTGTGGCACTTCTG 2988
Query 2872 TTCAAGAGTTGCCCGGAAGTGCTATATGTCTTTCAGCCATTCAGGTGGGAATTACTTG-A 2930
|| |||||||||||||||||||| ||||| ||||| || ||||||||||| ||| ||| |
Sbjct 2989 TTTAAGAGTTGCCCGGAAGTGCTCTATGTGTTTCAACCGTTCAGGTGGGAGTTA-TTGGA 3047
Query 2931 GTATGGAACAAGCT-AGT 2947
||||||||||||| |||
Sbjct 3048 CTATGGAACAAGCTGAGT 3065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118917744890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5