BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60050.1
Length=1680
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939040 jgi|Araly1|939040|scaffold_503231.1 2340 0.0
Ahg924077 jgi|Araly1|924077|scaffold_105358.1 922 0.0
> Ahg939040 jgi|Araly1|939040|scaffold_503231.1
Length=1470
Score = 2340 bits (1267), Expect = 0.0
Identities = 1406/1472 (96%), Gaps = 13/1472 (1%)
Strand=Plus/Plus
Query 32 TAATGGGGATTGAGATCAGATATGAACTTGGCACTTGTTTTAGGCACAAATGTAGTTCGT 91
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 TAATGGGGATTGAGATCAGATATGAACTTGGCACTTGTTTTTGGCACAAATGTAGTTCGT 60
Query 92 AAAGCTTATCGCTTTCTCTTCATCTCCAGAAAATTCTGCAATGGGAACTTTGGTGGTAAT 151
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 61 AAAGCTTATCGCTTTCTCTTCAGCTCCAGAAAATTCTGCAATGGGAACTTTGGTGGTGAT 120
Query 152 GAAATCGATAATGGTTTCCC-----T-GATTTGGATTGTGGATTTGACGAGGACTCCAAT 205
|||||||||||||||||||| | |||||||||||||||||||||||||| ||||||
Sbjct 121 GAAATCGATAATGGTTTCCCTGAATTAGATTTGGATTGTGGATTTGACGAGGAATCCAAT 180
Query 206 ATCAGTGAGCTCAGAAGCATCGATCGAGAAGTGATCTCTGTTCGGAGTAGGTTTTTGGAG 265
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCACTGAGCTCAAAAGCATCGATCGAGAAGTGATCTCTGTTCGGAGTAGGTTTTTGGAG 240
Query 266 AGTGCCAATCATAGTGCGTCTCGTGTTCTCGTGACATTGCAGCTAGATGAATCTGGATTC 325
|||||||| | |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 AGTGCCAAGGTTGGTGCGTCTCGTGTTCTCGAGACATTGCAGCTAGATGAATCTGGATTT 300
Query 326 AATTCAAAGTCAGTTTTAGATGAATTGAATGTTAGAGTCTCAGGGCTTCTAGTGAGGGAG 385
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AATACAAAGTCAGTTTTAGATGAATTGAATGTTAGAGTCTCAGGGCTTCTAGTGAGGGAG 360
Query 386 GTTCTTGTAGGGATCTTAAGGAACTTGAGCTATGATAATAAGGCAAGATGTGCGAAACTA 445
||||||||||||||||||||||||||||| |||||||||||| | |||||||||| | ||
Sbjct 361 GTTCTTGTAGGGATCTTAAGGAACTTGAGTTATGATAATAAGACCAGATGTGCGAGATTA 420
Query 446 GCTTATAGATTCTTCCTGTGGTCTGGAGAACAAGAGTGTTTTAGGCACACAGTGAATTCT 505
||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 421 GCTTATAGATTCTTCGTGTGGTCTGGAGAACAAGATTGTTTCAGGCACACAGTGAATTCT 480
Query 506 TATCATTTGCTTATGAAGATATTTGCAGAGTGTGGAGAGTACAAGGCAATGTGGAGGTTA 565
|||||| |||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 481 TATCATCTGCTTATGAAGATATTTGCAGAATGTGGAGAGTATAAGGCAATGTGGAGATTA 540
Query 566 GTTGATGAGATGGTTCAAGACGGATTCCCGACAACAGCGAGGACGTTTAATCTGTTGATT 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTTGATGAGATGGTTCAAGACGGATTCCCGACAACAGCGAGGACGTTTAATCTGTTGATT 600
Query 626 TGTAGTTGTGGTGAAGCAGGTTTAGCGAAACAAGCTGTTGTGCAGTTCATGAAGTCCAAG 685
|||||| | |||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 601 TGTAGTCGCGGTGAAGCAGGTTTGGCGAAACAAGCTGTTGTGCAGTTTATGAAGTCCAAG 660
Query 686 ACTTTTAATTACCGACCTTTCAAACACTCTTATAACGCGATTTTGAATTCTTTGCTAGGT 745
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 661 ACTTTCAATTACCGACCTTTCAAACACTCTTATAACGCAATTTTGAATTCTTTGCTAGGT 720
Query 746 GTAAAACAGTATAAATTGATTGAGTGGGTTTACAAGCAGATGTTAGAAGACGGGTTTTCG 805
|||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 721 GTAAGACAGTATAAATTGATCGAGTGGGTTTACGAGCAGATGTTAGAAGACGGGTTTTCG 780
Query 806 CCAGATGTTCTGACTTATAACATTCTCTTGTGGACAAACTATAGGTTAGGGAAAATGGAT 865
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CCTGATGTTCTGACTTATAACATTCTCTTGTGGACAAACTATAGGTTAGGGAAAATGGAT 840
Query 866 AGATTCGACAGGCTGTTTGATGAGATGGCTCGAGATGGGTTCTCTCCGGATT-CTTACAC 924
||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||
Sbjct 841 AGATTCGACAGGCTGTTTGATGAGATGGCTCGAGATGGGTTGTCTCCGGATTTCT-ACAC 899
Query 925 ATACAACATTTTGCTGCACATTTTGGGGAAAGGGAATAAACCTCTCGCTGCTCTTACTAC 984
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 900 ATACAACATTTTGCTGCACATTTTGGGGAAAGGAAATAAACCGCTCGCTGCTCTTACTAC 959
Query 985 GTTGAACCATATGAAGGAAGTAGGAATCGACCCGAGTGTCCTCCACTACACTACTTTGAT 1044
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 960 GTTGAACCATATGAAGGAAGTAGGAATCGACCTGAGTGTCCTCCATTACACTACTTTGAT 1019
Query 1045 AGACGGTCTGAGCCGTGCAGGGAATCTGGAGGCGTGCAAGTACTTTCTAGATGAAATGGT 1104
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1020 AGACGGTCTGAGCCGTGCAGGGAATTTGGAGGCGTGCAAGTACTTTCTAGATGAAATGGT 1079
Query 1105 GAAAGCTGGGTGCAGACCGGATGTTGTTTGTTACACAGTGATGATAACAGGGTATGTTGT 1164
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1080 GAAAGCTGGGTGCAGACCGGATGTTGTTTGTTACACCGTCATGATAACAGGGTATGTTGT 1139
Query 1165 ATCTGGAGAGCTCGACAAGGCAAAGGAGATGTTTAGAGAGATGACAGT-GAAAGGGCAAT 1223
||||||||||||||| ||||||||||||||||||||||||||||| || ||| |||||||
Sbjct 1140 ATCTGGAGAGCTCGAGAAGGCAAAGGAGATGTTTAGAGAGATGACGGTAGAA-GGGCAAT 1198
Query 1224 TACCGAATGTATTCACATACAACTCAATGATTCGCGGGTTGTGTATGGCGGGAGAGTTCA 1283
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1199 TACCGAATGTATTCACATACAACTCGATGATTCGCGGGTTGTGTATGGCGGGAGAGTTCA 1258
Query 1284 GAGAGGCGTGTTGGTTGTTAAAGGAAATGGAATCTAGAGGGTGTAACCCGAATTTCGTAG 1343
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GAGAGGCGTGTTGGTTGCTAAAGGAAATGGAATCTAGAGGGTGTAACCCGAATTTCGTAG 1318
Query 1344 TGTATAGTACATTGGTGAGCTATTTAAGAAAGGCAGGGAAGCTTTCAGAAGCTCGCAAGG 1403
||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1319 TGTATAGTACACTGGTTAGCTATTTAAGAAAGGCAGGGAAGCTTTCAGAGGCTCGCAAGG 1378
Query 1404 TAATAAGAGAGATGGTGAAGAAAGGACATTATGTTCATTTAGTTCCAAAGATGATGAAAT 1463
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1379 TAATAAGAGAGATGGTGAAGAAAGGACACTATGTTCATTTAGTTCCAAAGATGTTGAAAT 1438
Query 1464 ATAGGAGAT-A--GACTTTTGTTTTGTTAATT 1492
||||||||| | || ||||||||||||||||
Sbjct 1439 ATAGGAGATGATAGAGTTTTGTTTTGTTAATT 1470
> Ahg924077 jgi|Araly1|924077|scaffold_105358.1
Length=1477
Score = 922 bits (499), Expect = 0.0
Identities = 1018/1263 (81%), Gaps = 58/1263 (5%)
Strand=Plus/Plus
Query 239 ATCTCTGTTCGGAGTAGGTTTTTGGAGAGTGCCAATCAT-AGTGCGTCTCGTGTTCTCG- 296
||||||||| | || |||||| |||||||||| || | | |||||||||| |||||||
Sbjct 216 ATCTCTGTTAGAAGAAGGTTTATGGAGAGTGCTAAGC-TCGGTGCGTCTCGGGTTCTCGA 274
Query 297 TGACATTGCAGCTAGA-TGAAT-CTGGATTCAATTC-AAAGTCAGTTTTAGATGAATTGA 353
| || || |||| ||| || | | || |||||| | ||| |||| ||||||||| ||||
Sbjct 275 T-ACTTTACAGCAAGATTG--TCCCGGTTTCAATACGAAA-TCAGCTTTAGATGATTTGA 330
Query 354 ATGTTAGAGTCTCAGGGCT-TCTAGTGAGGGAGGTTCTTGTAGGGATCTTAAGGA-ACTT 411
| |||| | |||||||||| | ||||||| ||||||||||| ||||||||||||| || |
Sbjct 331 ACGTTACAATCTCAGGGCTAT-TAGTGAGAGAGGTTCTTGTTGGGATCTTAAGGACAC-T 388
Query 412 GAGCTATGATAATAAGGCAAGATGTGCGAAACTAGCTTA-TAGATTCTTCCTGTGGTCTG 470
|||||||||||||||| |||| ||||| || |||||||| || ||||| |||||| ||
Sbjct 389 GAGCTATGATAATAAGACAAGGTGTGCTAAGCTAGCTTACAAG-TTCTTTGTGTGGTGTG 447
Query 471 GAGAACAAGAGTGTTTTAGGCACACAGTGAATTCTTATCATTTGCTTATGAAGATATTTG 530
| | ||||||| ||| |||||||| | ||||| ||||||||| ||||||||||||||||
Sbjct 448 GTGGACAAGAGAATTTCAGGCACACTGCGAATTGTTATCATTTACTTATGAAGATATTTG 507
Query 531 CAGAGTGTGGAGAGTACAAGGCAATGTGGAGGTTAGTTGATGAGATGGTTC-AAGACGGA 589
|||||||||| ||||| || || ||||| ||| || |||| ||||| | || |||||||
Sbjct 508 CAGAGTGTGGTGAGTATAAAGCCATGTGCAGGCTAATTGACGAGAT-GATCAAAGACGG- 565
Query 590 TT-CCCGACAACAGCGA-GGACGTTTAATCTGTTGATTTGTAGTTGTGGTGAAGCAGG-T 646
|| || || || || | | ||||||||||||||||| |||| ||| |||||||||||
Sbjct 566 TTATCCAACGACGGC-ATGCACGTTTAATCTGTTGATATGTACTTGCGGTGAAGCAGGCC 624
Query 647 TTAGCGAAACAAGCT-GTTGTGCAGTTCATGAAGTCCAAGACTTTTAATTACCGACCTTT 705
|| || | | | | | || | ||| ||||| ||||| || ||||| |||||||||||||
Sbjct 625 TT-GCTAGAGATG-TCGTGGAGCAATTCATCAAGTCGAAAACTTTCAATTACCGACCTTA 682
Query 706 CAAACACTCTTATAACGCGATTTTGAATTCTTTGCTAGGTGTAAAACAGTATAAATTGAT 765
|||||||||||||||||| |||||| ||||||||||||| || |||||||| || ||||
Sbjct 683 CAAACACTCTTATAACGCCATTTTGCATTCTTTGCTAGGGGTGAAACAGTACAAGCTGAT 742
Query 766 TGAGTGGGTTTACAAGCAGATGTTAGAAGACGGGTTTTCGCCAGATGTTCTGACTTATAA 825
||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 743 TGATTGGGTTTACGAGCAGATGTTAGAAGACGGGTTTTCGCCGGATGTTCTGACTTACAA 802
Query 826 CATTCTCTTGTG-GACAAACTATAGGTTAGGGAAAATGGATAGA-TTCGACAGGCTGTTT 883
|||| | ||| | |||||| |||||||||||||| ||| | || |||| | |
Sbjct 803 CATTGTAATGTTTG-CAAACTTTAGGTTAGGGAAAACAGATCGGCTTT-ACAGATTACTC 860
Query 884 GATGAGATGGCTCGAGATGGGTTCTCTCCGGATTCT-TACACATACAACATTTTGCTGCA 942
||||| |||| | ||| ||||| ||||| |||| | || ||||||||||| | || ||
Sbjct 861 GATGAAATGGTTAAAGACGGGTTTTCTCCTGATT-TATATACATACAACATCCTCCTCCA 919
Query 943 C-ATTTTGGGGAA-AGGGAATAAACCTCTCGCTGCTCTTA-C-TACGTTGAAC-CATATG 997
| || | | || ||| || || |||||||||||||||| | ||| | ||| ||||||
Sbjct 920 CCATCTAGC--AACAGGAAACAAGCCTCTCGCTGCTCTTAACCTAC-T--AACTCATATG 974
Query 998 AAGGAAGTAGGAATCGA-CCCGAGTGTCCTCCACTACACTACTTTGATAGACGGTCTGAG 1056
| |||||| ||| | || |||| |||| |||| | ||||||| |||||||||| |||||
Sbjct 975 AGGGAAGTTGGAGTAGAGCCCG-GTGTGATCCATTTCACTACTCTGATAGACGGGCTGAG 1033
Query 1057 CCGTGCAGGGAA-TCTGGAGGCGTGCAAGTACTTTCTAGATGAAATGGTGAAAGCTGGGT 1115
||| || ||||| | | || || ||||| |||||| | || ||||||||||||| ||| |
Sbjct 1034 CCGAGCTGGGAAGT-TAGAAGCTTGCAAATACTTTATGGACGAAATGGTGAAAGTTGGAT 1092
Query 1116 GCA-GACCGGATGTTGTTTGTTACACAGTGATGATAACAGGGTATGT-TGTATCTGGAGA 1173
||| | |||||||||||||| ||||| || ||||| ||||| ||| | | | ||| ||
Sbjct 1093 GCAAG-CCGGATGTTGTTTGCTACACTGTTATGATCACAGGTTATATATC-AGGTGGGGA 1150
Query 1174 GCTCGACAAGGCA-AAGGAGATGTTTAGAGAGATGACAGTGAAAGGG-CAATTACCGAAT 1231
|||||| || || ||| | ||||||| ||||||||||| |||||| ||| | || |||
Sbjct 1151 GCTCGAGAAAGCTGAAGAA-ATGTTTAAAGAGATGACAGA-AAAGGGTCAACTCCCTAAT 1208
Query 1232 GTATTCACATACAACTCAATGATTCGCGGGTTGTGTATGGCGGG-AGAGTTCAGAGAGGC 1290
|| |||||||||||||| ||||| |||||||| ||||||||||| | | |||| ||||||
Sbjct 1209 GTTTTCACATACAACTCGATGATCCGCGGGTTTTGTATGGCGGGGAAA-TTCAAAGAGGC 1267
Query 1291 GTGTTGGTTGTTAAAGGAAATGGAATCTAGAGGGTGTAACCCGAATTTCGTAGTGTATAG 1350
||| | |||| | ||||||||||| || |||||||||||||| |||||||| ||||||||
Sbjct 1268 GTGCTCGTTGCTCAAGGAAATGGAGTCAAGAGGGTGTAACCCTAATTTCGTGGTGTATAG 1327
Query 1351 TACATTGGTGAGCTATTTAAGAAAGGCAGGGAAGCTTTCAGAAGCTCGCAAGGTAATAAG 1410
|| | |||||| | || ||||||| ||||||||| ||| ||| |||| | ||||| |||
Sbjct 1328 TATACTGGTGAACAATCTAAGAAACGCAGGGAAGGTTTTAGAGGCTCACGAGGTAGTAAA 1387
Query 1411 AGAGATGGTGAAGAAAGGACATTATGTTCAT-TTAGTTCCAAAGATGATGAAATATAGGA 1469
||| |||||| ||||||| |||||||||||| ||| ||| |||| ||| |||||||| |
Sbjct 1388 AGACATGGTGGAGAAAGGGCATTATGTTCATCTTATTTC-AAAGTTGAAAAAATATAGAA 1446
Query 1470 GAT 1472
|||
Sbjct 1447 GAT 1449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63001265230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5