BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60070.1
Length=1895
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486472 jgi|Araly1|486472|fgenesh2_kg.5__2464__AT3G60070.1 2477 0.0
Ahg935358 jgi|Araly1|935358|scaffold_403346.1 1260 0.0
> Ahg486472 jgi|Araly1|486472|fgenesh2_kg.5__2464__AT3G60070.1
Length=1690
Score = 2477 bits (1341), Expect = 0.0
Identities = 1541/1635 (94%), Gaps = 24/1635 (1%)
Strand=Plus/Plus
Query 1 ATGAAACAAGTTTTTCTCTGTCTTCTTTACTCCTTCTTTTTCCCTCCTTTGGGGG-AGAA 59
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||
Sbjct 1 ATGAAACAAGTTTTTCTCTGTCTTCTTTACGCCTTCTTTTTCCCTCCTTTGGGGGAAAAA 60
Query 60 ATTGTTGCTTTTGAGGTTTCTTATAGATCAATCTCTCATCACAAGGGCTTTCATTTGAAG 119
|| ||||||||||||||||||| || ||||||||||| ||||||||| ||| |||
Sbjct 61 ATCGTTGCTTTTGAGGTTTCTTCTAAATCAATCTCTCTTCACAAGGG-TTT--TTT---- 113
Query 120 TTGATTCTGGGTCCAGATTGATTAAAAATCCTCACTTTATTCCGGGGAAAATTTCGAAGC 179
|| ||| | | | ||||||| ||| | || ||| |||| ||||||||
Sbjct 114 TTTATT-T--G---AAATTGATTCTGGGTCCAGA-TTGATT------AAAAATTCGAAGC 160
Query 180 GGTTGAGAAAATGACCGGAGGAAGTGAGGAGGATCCATTCACAAAACCCATTGGAAGATG 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 GATTGAGAAAATGACCGGAGGAAGTGAGGAGGATCCATTCACAAAACCCATTGGAAGATG 220
Query 240 GTCTGTCTTCTTCTATGGAGTAGGGCATATGCTTAATGACATTACTGCTTCTTGTTGGTT 299
||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 221 GTCTGTCTTCTTCTATGGAGTTGGGCACATGCTTAATGACATTACTGCTTCATGTTGGTT 280
Query 300 CACTTACCTCCTCCTATTCTTGACCCAAATTGGTCTCTCCCCTAGAGATGCAGCCATTGT 359
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 281 CACTTACCTCCTCCTATTCTTGACCCAAATTGGTCTCTCCCCAAGAGATGCAGCAATTGT 340
Query 360 TATGCTCTCTGGCCAAGTTGCTGATGCATTTGCTACTATCTTCACTGGTGAATTGATTGA 419
|||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 341 TATGCTATCAGGCCAAGTTGCTGATGCGTTTGCTACTATCTTCACTGGTGAATTGATAGA 400
Query 420 TAGGTTTGGACATTTCAAGATTTGGCATGCTGCAGGATCATTACTGGTTGCAATCTCGTT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 TAGGTTTGGACATTTCAAGATTTGGCATGCTGCAGGATCATTACTGGTTGCAATCTCGTT 460
Query 480 TTCCTCCGTTTTTGGAGGTTGTCTGCCTTGTTCGATCCTCCATAACGACTCTTTAACACT 539
|||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 461 TTCCTCGGTTTTCGGAGGTTGTCTGCCTTGTTCGATCCTCCATAACGACTCTATAACACT 520
Query 540 TGAAACCTTCTCCTACAGTATGTTTGCAGCTATATTTAACATTGGATGGGCTGCTACTCA 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 CGAAACCTTCTCCTACAGTATGTTTGCAGCTATATTTAACATTGGATGGGCTGCTACTCA 580
Query 600 AGTTTCCCATATGGCTATGGTTAATTGTATTTCATTGAACTCAACAAGCAGAGTTGCTTT 659
||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 581 AGTTTCCCATATGGCCATGGTTAATTGCATTTCATTAAACTCAACAAGCAGAGTTGCTTT 640
Query 660 AACAAGCTCTCGTAACGCGTTTACTATGGTTGCTAATCTTGGCTTATATGCGATTGCTTT 719
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 AACTAGCTCTCGTAACGCGTTTACTATGGTTGCTAATCTTGGCTTATATGCGATTGCTTT 700
Query 720 AGTAGTATTCGGTGTTATTAAGGCTGGTTCAAAAGAAGATACCGAAACTCAGTATCGCTG 779
||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||
Sbjct 701 AGTAGTATTCGGTGTTATTAAAGCTGGTTCAAAAGAAGATACGGAAACACAGTATCGTTG 760
Query 780 GATTGCATATTCATCTATCACAATTGGATGCTGCTTTGTGGTCATATTTCTTATGGGGAC 839
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 761 GATTGCATATTCATCTATCACGATTGGATGCTGCTTTGTGGTCATATTTCTTATGGGGAC 820
Query 840 AAAAGAGCCAAGGCTGAGGATAGATTTGAAAGAAACTAGCCGAGCGAGAATACCGTGGGT 899
|||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||
Sbjct 821 AAAAGAGCCAAGGCTGAGGATAGAATTGAAACAAACTAGCCGAGCAAGAATACCGTGGGT 880
Query 900 CTATTGGTTCCGGAAAATTCTGTACTATCAAGTTGCCATGGTTTACCTCCTCACTCGATT 959
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 881 CTATTGGTTCCGGAAACTTCTATACTATCAAGTTGCCATGGTTTACCTCCTCACTCGATT 940
Query 960 AGTATTGAATGTTTCTCAGGCATATCTTGCGTTCTTTGTTATCGATGATTTGCAAATGGA 1019
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 941 AGTATTGAATGTTTCTCAGGCATATCTTGCATTCTTCGTTATCGATGATTTGCAAATGGG 1000
Query 1020 TCAATCCGCTAAAGCTTTGGTTCCTGCAATTATCTATATCTGCAGCTTTGTTGTATCGGT 1079
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1001 TCAATCCGCTAAAGCTTTGGTTCCTGCGATTATCTATATCTGCAGCTTTGTTGTATCGGT 1060
Query 1080 TCTGCTTCAGGAGATTCCATGGAACGGGAAACGCTTGAAGGCGTATTATACAGCTGGTGG 1139
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1061 TCTGCTTCAGGAGATTCCATGGAACGGGAGACGCTTGAAGGCGTATTATACAGCTGGTGG 1120
Query 1140 TATAATTTGGATATTCTGTGGTGCAGCAATTCTTCTATTGCCTAGAGACATAAGTTCTTT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 TATAATTTGGATATTCTGTGGTGCAGCAATTCTTCTATTGCCTAGAGACATAAGTTCTTT 1180
Query 1200 CATGTATGCGATATCTGTCTTTATCGGCATCGCGAATGCATTAATGATGGTAACAGCAAT 1259
|||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 1181 CATGTATGCGATATCTGTCTTTATTGGCATCGCAAATGCATTAATGATGGTTACAGCAAT 1240
Query 1260 CAGTATGCAGAGTGTGTTGGTTGGTGCAGAAGTCGGTGGTTGCGCATTTGTTTGCGGCTC 1319
||||||||||||||||||||||||||| ||||||||||||||||| ||||| || |||||
Sbjct 1241 CAGTATGCAGAGTGTGTTGGTTGGTGCGGAAGTCGGTGGTTGCGCGTTTGTCTGTGGCTC 1300
Query 1320 GTTGAGCTTCTTAGACAAGATGTCTTGTGGACTTGCTCTATATGTTCTTCAGTCACACCA 1379
||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1301 GTTAAGTTTCTTGGACAAGATGTCTTGTGGGCTTGCTCTATATGTTCTTCAGTCACACCA 1360
Query 1380 AACTACTTCACCTAGAGGCCAACTAAACAACAAC--C-AACAAAGTGTTTACCTTTCAGT 1436
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||
Sbjct 1361 AACTACTTCACCTAGAGGCCAACTAAACAACAACAACCAACAAAGTGTTTACCTTTCGGT 1420
Query 1437 TACAAGATACGGTTTAGGTCTTGTTCCAGCATTGTGCTCGTTTGTTGGTGTCGCTGTAAC 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 TACAAGATACGGTTTAGGTCTTGTTCCAGCATTGTGCTCGTTTGTTGGTGTCGCTGTAAC 1480
Query 1497 GTTCTTTATGGAGCTCGAAGCTGCTGGATCATTATCGAAGCCTCTGCTGCGTGAGCCGTT 1556
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1481 GTTCTTTATGGAGCTCGAAGCTGCTGGATCACTATCGAAGCCCCTGCTGCGTGAGCCGTT 1540
Query 1557 ACTAGAATGACAAAATAGTCTTCTGAGGTTAAAAACACTAAATGCTCGATTGTTTCTTTT 1616
|||||||||||||||| || || |||||||||||||||||||||||||||||||| ||||
Sbjct 1541 ACTAGAATGACAAAATGGTATTTTGAGGTTAAAAACACTAAATGCTCGATTGTTTTTTTT 1600
Query 1617 GAATATGTTTGATTT 1631
||| | |||||||||
Sbjct 1601 GAACAAGTTTGATTT 1615
> Ahg935358 jgi|Araly1|935358|scaffold_403346.1
Length=1433
Score = 1260 bits (682), Expect = 0.0
Identities = 1130/1342 (84%), Gaps = 47/1342 (4%)
Strand=Plus/Plus
Query 199 GGAAG-TGAGGAGGATCCATTC-ACAAAACCCA-TTGGAAGATGGTCTGTCTTCT-TCTA 254
||||| || || |||||| || |||||| ||| ||||||||| ||| || |||| | ||
Sbjct 50 GGAAGAAGAAGAAGATCCA-TCGACAAAA-CCACTTGGAAGATTGTCGGTGTTCTAT-TA 106
Query 255 TGGAGTAGGGCATATGCTTAATGACATTACTGCTTCTTGTTGGTTCACTTACCTCCTCCT 314
|||||| || ||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 107 TGGAGTTGGACATATGCTTAATGACATTACTGCTTCTTGTTGGTTTACTTACCTCCTCTT 166
Query 315 ATTCTTGACCCAAATTGGTCTCTCCCCTAGAGATGCAGCCATTGTTATGCTCTCTGGCCA 374
|| || |||||||||||||||||||| || ||||| || ||||| ||||||||||| ||
Sbjct 167 GTTTTTAACCCAAATTGGTCTCTCCCCAAGGGATGCTGCAATTGTCATGCTCTCTGGTCA 226
Query 375 AGTTGCTGATGCATTTGCTACTATCTTCACTGGTGAATTGATTGATAGGTTTGGACATTT 434
||||||||||| |||||||||||||||| |||||||||||||||||| ||||| |||||
Sbjct 227 AGTTGCTGATGGTTTTGCTACTATCTTCATTGGTGAATTGATTGATAGATTTGGGCATTT 286
Query 435 CAAGATTTGGCATGCTGCAGGATCAT-TACTGGTTGCAATCTCGTTTTCCTCCGTTTTTG 493
||| |||||||||||||||||||| | || | ||||| ||||| |||||||| |||||||
Sbjct 287 CAAAATTTGGCATGCTGCAGGATC-TCTATTAGTTGCTATCTCATTTTCCTCTGTTTTTG 345
Query 494 GAGGTTGTCTGCCTTGTTCGA-TCCTCCATAACGACTCTTTAAC-ACTTGAAACCTTCTC 551
| |||||| |||||||||| | ||||||||| |||| | ||| | | ||||| || ||
Sbjct 346 GCGGTTGTTTGCCTTGTTC-ACTCCTCCATAGTAACTCCTCAACTA-TCGAAACATTATC 403
Query 552 CTACAGTATGTTTGCAGCTATATTTAACATTGGATGGGCTGCTACTCAAGTTTCCCATAT 611
|| | |||||||||||||| || || | ||||||||||||||||| ||||| || ||
Sbjct 404 GTATTGCATGTTTGCAGCTATCTTCAATGTAGGATGGGCTGCTACTCAGGTTTCTCACAT 463
Query 612 GGCTATGGTTAATTGTATTTCATTGAACTCAACAAGCAGAGTTGCTTTAACAAGCTCTCG 671
|||||| |||||||| ||| ||||||| |||||||||||||| || |||||||||| ||
Sbjct 464 GGCTATAGTTAATTGCATTACATTGAATTCAACAAGCAGAGTAGCACTAACAAGCTCCCG 523
Query 672 TAACGCGTTTA-CTATGGTTGCTAATCTT-GGCTTATATGCGATTGCTTTAGTAGTATTC 729
||| ||||||| | ||||||||||| ||| |||||||| |||||||||||||| |||||
Sbjct 524 TAATGCGTTTAGC-ATGGTTGCTAA-CTTAGGCTTATACGCGATTGCTTTAGTTGTATTT 581
Query 730 GGTGTTATTAAGGCTG-GTTCAAAAGAAGATACCGAAACTCAGTATCGCTGGATTGCATA 788
||||||| |||| | | |||||||| ||||||||||||||||||| |||||||| ||
Sbjct 582 GGTGTTAGCGAGGCCGTGA-CAAAAGAAAATACCGAAACTCAGTATCGTTGGATTGCTTA 640
Query 789 TTCATCTATCACAATTGGATGCTGCTTTGTGGTCATATTTCTTATGGGGACAAAAGAGCC 848
|||||| ||||| |||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 641 TTCATCCATCACCGTTGGCTGCTGCTTTGTGGTCATATTTCTTATGGGGACAAAGGAACC 700
Query 849 AAGGCTGAGGATAGATTTGAA-AGAAACTAGCCGAGCGAGAATACCGTGGGTCT-ATTGG 906
|||| ||| |||| |||| || ||| ||||||||| | |||||||| ||| ||| |||||
Sbjct 701 AAGGATGAAGATAAATTT-AAGAGAGACTAGCCGATCAAGAATACCATGG-TCTTATTGG 758
Query 907 TTCCGGAAAATTCTGTACTATCAAGTTGCCATGGTTTACCTCCTCACTCGATTAGTATTG 966
||||| |||||||| |||||||||||||| |||||||| |||||||||||| ||||||||
Sbjct 759 TTCCGTAAAATTCTATACTATCAAGTTGCTATGGTTTATCTCCTCACTCGACTAGTATTG 818
Query 967 AATGTTTCTCAGGCATATCTTGCGTTCTTTGTTATCGATGATTTGCAAATGGATCAATCC 1026
|||||||| |||||||||||||| |||||| |||| |||||||||||||||| ||||||
Sbjct 819 AATGTTTCACAGGCATATCTTGCATTCTTTATTATTGATGATTTGCAAATGGCTCAATCT 878
Query 1027 GCTAAAGCTTTGGTTCCTGCAATTATCTATATCTGCAGCTTTGTTGTATCGGTTCTGCTT 1086
||||||||| || |||| ||||| ||||| ||||||||||| |||||||||||| |||||
Sbjct 879 GCTAAAGCTCTGATTCCCGCAATAATCTACATCTGCAGCTTCGTTGTATCGGTTATGCTT 938
Query 1087 CAGGAGATTCCATGGAACGGGAAACGCTTGAAGGCGTATTATACAGCTGGTGGTATAATT 1146
||||||||||| ||||| || |||||| | ||||| |||||| || |||||||| |||
Sbjct 939 CAGGAGATTCCTTGGAATGGAAAACGCCTCAAGGCATATTATTGTGCGGGTGGTATTATT 998
Query 1147 TGGATATTCTGTGGTGCAGCAATTCTTCT-ATTGCCTAGA-GACAT-AAGTTCTTTCATG 1203
||||||||||| ||| | |||| || || |||||| ||| | ||| || | | | ||||
Sbjct 999 TGGATATTCTGCGGTATATCAATCCT-CTTATTGCCCAGAAG-CATTAACT-CGTACATG 1055
Query 1204 TATGCGATATCTGTCTTTATCGGCATCGCGAATGCATTAATGATGGTAACAGCAATCAGT 1263
|||||||| |||||||||||||||||||| |||||||||||| |||| |||||||| |||
Sbjct 1056 TATGCGATCTCTGTCTTTATCGGCATCGCAAATGCATTAATGCTGGTGACAGCAATTAGT 1115
Query 1264 ATGCAGAGTGTGTTGGTTGGTGCAGAAGTCGGTGGTTGCGCATTT-GTTTGCGGCTCGTT 1322
||||||||||||||| ||||| | ||| ||||||| || || ||| ||||| || || ||
Sbjct 1116 ATGCAGAGTGTGTTGATTGGTTCGGAACTCGGTGGATGTGC-TTTCGTTTGTGGGTCATT 1174
Query 1323 GAGCTTCTTAGACAAGATGTCTTGTGGACTTGCTCT-ATATGTTCTTCAGTCACACCAAA 1381
|||||||||||||| ||||| ||||| ||||| || |||||||||||||||||| |||
Sbjct 1175 AAGCTTCTTAGACAAAATGTCATGTGGGCTTGC-CTTATATGTTCTTCAGTCACATCAAG 1233
Query 1382 -CTACTTCACCTAGAGGCCAAC-TAAACAACAACCAACAAAGTGTTTACCTT-TCAGTTA 1438
| |||||||| | ||| | |||||| ||| || | | ||||| || || || |
Sbjct 1234 GC-ACTTCACCAA-AGGTTGATGTAAACATCAAAGAATAT--T-TTTAC-TTCTCGGTAA 1287
Query 1439 CAAGATACGGTTTAGGTCTTGTTCCAGCA-TTGTGCTCGTTTGTTGGTGTCGCTGTAACG 1497
||||||| || ||||| ||||||||||| || |||||| ||||||| || | ||||||
Sbjct 1288 CAAGATATGGGTTAGGACTTGTTCCAGCTGTT-TGCTCGCTTGTTGGAGTTGTTGTAACA 1346
Query 1498 T-TCTTTATGGAGCTCGA-AGC 1517
| | |||||||| ||||| |||
Sbjct 1347 TAT-TTTATGGAACTCGATAGC 1367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71190667905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5