BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60080.1
Length=1488
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939042 jgi|Araly1|939042|scaffold_503233.1 1417 0.0
> Ahg939042 jgi|Araly1|939042|scaffold_503233.1
Length=950
Score = 1417 bits (767), Expect = 0.0
Identities = 890/947 (94%), Gaps = 18/947 (2%)
Strand=Plus/Plus
Query 308 accaccaccaccacttctcaatgtcgtcttccaccaccacaacaaccaccgtccacGGCG 367
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACCACAACCACCACTTCTCAATGTCGTCTTCCACCACCACAACAACCACCGTCCACGGCG 60
Query 368 AGCCTGAACGACGAACTTACTGGTGTCATGAATGCGATATGAGTTTAtccctcctctcct 427
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 61 AGCCTGAACGACGAACTTACTGGTGTCATGAATGCGATATGAGTTTA----TCC-CTCCT 115
Query 428 cctccgattccgattccgattcctctcctcTGTTATGTCCCCAATGCCGTGTCGATTTCC 487
|||| ||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 116 -CTCC---TCC---TCCGATTCCTCTCCTCTGTTATGTCCCCAATGCCGTCTCGATTTCC 168
Query 488 TCGAACGTATGGATCACGATTCTTCTTCTTCTAATCTCTTTGACGTTACCATCGGTGATT 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 TCGAACGTATGGATCACGATTCTTCTTCTTCTAATCTCTTTGACGTTACCATCGGTGATT 228
Query 548 TTGAAGAACAAGACGGAGAAAACGATGATGAAGACGACGAAGAAGATTGGTGTTTCGTTG 607
| |||||| | || |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 229 TCGAAGAAGATGATGGAGAAAACGATGACGAAGACGATGAAGAAGATTGGTGTTTCGTTG 288
Query 608 ATCCAGCTGTTAATTCCGATGATAATTTCCTCCTCGATAGTCCTTACCTTCACCGTCttc 667
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 ATCCAGCGGTTAATTCCGATGATAATTTCCTCCTCGATAGTCCTTACCTTCACCGTCTTC 348
Query 668 ttcgtcatctcgcttccgataattcaggatcgtcttcttcttcctcgtcttcatcttctt 727
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 349 TTCGCCATCTCGCTTCCGATAATTCAGGATCGTCTTCTTCTTCCTCCTCTTCATCTTCTT 408
Query 728 cttcGTTATTGAAATCTTCAGATATCGATTCGATCCCCACGATTCAGATCTCGTCTTCTT 787
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 409 CTTCGTTGTTGAAATCTTCAGATATCGATTCGATTCCCACGATTCAGATCTCGTCTTCTA 468
Query 788 TGCTCTGTTCCACCGATGATTCAGATCCAGATTCCGTTTTACTCTGCGCCGTTTGCAAAG 847
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 469 TGCTCTGTTCCACCGATGATTCAGATCCAGATTCCGTTTTACTCTGCGCCGTATGCAAAG 528
Query 848 AGGATTTCATCATCGGAGAATCTGCTCGGAGATTACCGTGTAGTCATATATACCACTCCG 907
|||||||| || ||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 529 AGGATTTCGTCGTCGGAGAATCTGCTCGGAGATTACCTTGTAGCCATATATACCACTCCG 588
Query 908 ATTGCATCGTCCCTTGGCTCTCGGATCATAACTCGTGTCCGCTTTGTAGATTTGAGCTCC 967
|||||||||| |||||||| |||||||| ||||||||||||||||| |||||||||| |
Sbjct 589 ATTGCATCGTTCCTTGGCTATCGGATCACAACTCGTGTCCGCTTTGCCGATTTGAGCTAC 648
Query 968 CTACGACGGCGAAGGTGGGAATCGGTGGCTCAGAGGCTGAGATGAGAATCAGATTATCGG 1027
|||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||
Sbjct 649 CTACGACGGCGAAGGTGGGAATTGGTGGTTCAGAGGCTGAGATGAGAATCCGATTATCGG 708
Query 1028 ATCTGGCTACGATTGCTGCAGATGGTGATGATGTGGAAGATGATTGGCTTGGAATCAGAA 1087
|||||||||||||||||||||| || |||||||||||||| |||||||||||||| ||||
Sbjct 709 ATCTGGCTACGATTGCTGCAGACGGAGATGATGTGGAAGACGATTGGCTTGGAATAAGAA 768
Query 1088 ACGCGTTGAGAAGACTGGCTCGTCGTCATGAGCAGATGAGATTGGGAGTGGGAGAGATGG 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 ACGCGTTGAGAAGACTGGCTCGTCGTCATGAGCAGATGAGATTGGGAGTGGGAGAGATGG 828
Query 1148 AGAGGAATTTGGCTAGGACTGTTTCAGGTCTTGGAATTGGTATGAGAAGAAGAGAAGAGA 1207
|||||||||||||| |||||||||||||||||||||||||| |||| ||| | || ||||
Sbjct 829 AGAGGAATTTGGCTCGGACTGTTTCAGGTCTTGGAATTGGTTTGAGGAGA-G-GA-GAGA 885
Query 1208 TTGAAGCAGACAGAAG---CAACGTCACAACGACGCCTTTGTAAGAA 1251
||||| |||| ||||| ||||| |||||||||||| |||||||||
Sbjct 886 TTGAATCAGAGAGAAGAAGCAACGCCACAACGACGCCGTTGTAAGAA 932
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55687938190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5