BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G60090.1

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939043 jgi|Araly1|939043|scaffold_503234.1                        721    0.0  


> Ahg939043 jgi|Araly1|939043|scaffold_503234.1
Length=521

 Score =  721 bits (390),  Expect = 0.0
 Identities = 448/476 (94%), Gaps = 4/476 (1%)
 Strand=Plus/Plus

Query  1    ATGGTGAGAAATTCTATGAAGGCTGAGTACGATATAGATCATCTTCCTCATCAAACCTTT  60
            |||||||||||||| ||||| |||||||||||| ||||||||||| ||||||||| ||||
Sbjct  28   ATGGTGAGAAATTCAATGAAAGCTGAGTACGATCTAGATCATCTTTCTCATCAAAGCTTT  87

Query  61   TATGGTGATTATTCAAAAACTTTGGTTCCCATGAACAAGAACTCCCAAATAATAACCAAG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  88   TATGGTGATTATTCAAAAACTTTGGTTCCCATGAACAAGAACTCCCAAATAATAACCAAG  147

Query  121  ATCAAGCCTAAGATCCGTATCATCCATATATTTGCTCCCGAGATCATCAACACCGATGTC  180
             |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct  148  GTCAAGCCTAAGATCCGTATCATCCATATATTTGCGCCTGAGATCATCAACACCGATGTC  207

Query  181  AAGAACTTCCGCACACTCGTCCAAAGTCTAACCGGGAAA-CCGGAGATCACCAAAACCGG  239
            ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct  208  AAGAACTTCCGTACACTCGTCCAAAGTCTAACC-GGAAAGCCGGAGATCACCAAAACCGG  266

Query  240  TTCTAAGAAAAAGATAACCAACACAAATTTTCCTGCGCCACCGGGTT-TGCCTCAAGATT  298
            ||||||||||||||||||||| |||| |||||| |||||| |  ||| ||||||||||||
Sbjct  267  TTCTAAGAAAAAGATAACCAAAACAAGTTTTCCCGCGCCATC-TGTTCTGCCTCAAGATT  325

Query  299  CCGGCCAAGAACATACGGCTGAACTGGACAACAGAATAATAGGGAGCCACGTGGTGAAGG  358
            ||||||||||||||||||| || |||| || || ||||||||||||||| ||||||||||
Sbjct  326  CCGGCCAAGAACATACGGCGGAGCTGGTCAGCAAAATAATAGGGAGCCATGTGGTGAAGG  385

Query  359  AAGAATGGGGATCAAGTTCAAACACAAATACTTACTTTGATTTTGACGGTTTGATCGATC  418
            ||||||||||||||||||| |||||||| |||||||||||||| || |||||||||||||
Sbjct  386  AAGAATGGGGATCAAGTTCGAACACAAACACTTACTTTGATTTAGATGGTTTGATCGATC  445

Query  419  TTGATGAAGACGACAACATATTCTCAAGTCGATGGTTTGATCTTCAACAACAATAA  474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  446  TTGATGAAGACGACAACATATTCTCAAGTCGATGGTTTGATCTTCAACAACAATAA  501



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17170015050


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5