BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60100.1
Length=1754
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486475 jgi|Araly1|486475|fgenesh2_kg.5__2467__AT3G60100.1 2525 0.0
Ahg483560 jgi|Araly1|483560|fgenesh2_kg.4__2620__AT2G44350.2 1282 0.0
> Ahg486475 jgi|Araly1|486475|fgenesh2_kg.5__2467__AT3G60100.1
Length=1608
Score = 2525 bits (1367), Expect = 0.0
Identities = 1531/1610 (95%), Gaps = 12/1610 (1%)
Strand=Plus/Plus
Query 155 AAGAATGGTGTTTTTTCGCAGCGTATCAGCCATTTCAAGACTACGGTCTCGAGCAGTGCA 214
|||||||||| ||||||| ||| |||||||||||||||| || |||||||||||||||||
Sbjct 1 AAGAATGGTGGTTTTTCGTAGCTTATCAGCCATTTCAAGGCTTCGGTCTCGAGCAGTGCA 60
Query 215 ACAATCCTCACTTAGTAACTCCGTCAGATGGCTCCACTCTTCTGAATTGGACTTGAAGTC 274
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACAATCCTCACTTAGCAACTCCGTCAGATGGCTCCACTCTTCTGAATTGGACTTGAAGTC 120
Query 275 GCAGATGCAAGAGATCATTCCAGAACAACAGGACCGTTTGAAGAAACTGAAATCAGAACA 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCAGATGCAAGAGATCATTCCAGAACAACAGGACCGTTTGAAGAAACTGAAATCAGAACA 180
Query 335 AGGAAAGGTTCCAGTGGGGAACATCACCGTTGATATGGTACTTGGTGGAATGAGAGGGAT 394
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGGAAAGGTCCCAGTGGGGAACATCACCGTTGATATGGTACTTGGTGGAATGAGAGGGAT 240
Query 395 GACTGGATTACTCTGGGAAACCTCATTGCTTGATGCAGATGAGGGAATACGGTTTAGAGG 454
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 GACTGGATTACTCTGGGAAACCTCATTGCTTGATGCAGATGAGGGAATACGCTTTAGAGG 300
Query 455 CATGTCGATTCCTGAATGTCAGAAAA-TATTACCTTCAGCTGAGTCTGGAGAAGAGCCCT 513
|||||||||||||||||| || |||| |||||||||||||| ||||||||||||||||||
Sbjct 301 CATGTCGATTCCTGAATGCCA-AAAAGTATTACCTTCAGCTCAGTCTGGAGAAGAGCCCT 359
Query 514 TGCCTGAGAGTCTTCTGTGGCTTCTATTAACTGGAAAGGTGCCAACTAAAGAGCAAGCTA 573
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 360 TGCCTGAGGGTCTTCTGTGGCTTCTGTTAACTGGAAAGGTGCCAACTAAAGAGCAAGTTA 419
Query 574 ATGCTTTGTCAACAGAGTTGGCTCATCGTGCGGCTGTGCCAGCTATAGATGCTTTGCCTT 633
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 420 ATGCTTTGTCAAAAGAGTTGGCTCATCGTGCGGCTGTGCCAGCTATAGATGCCCTGCCTT 479
Query 634 CAACAGCTCATCCAATGACTCAATTTGCTAGTGGTGTTATGGCCCTTCAGGTTCAAAGTG 693
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 480 CAACAGCTCATCCAATGACTCAATTTGCTAGTGGGGTTATGGCCCTTCAGGTTCAAAGTG 539
Query 694 AGTTTCAAAAGGCGTATGAGCAGGGTGATATTTC-TAAGTCAAAGTACTGGGAACCAACC 752
||||||| ||||| |||||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct 540 AGTTTCAGAAGGCATATGAGCAGGGTGATA-TTCATAAGTCAAAGTACTGGGAGCCAACC 598
Query 753 TTCGAAGATGCCCTAAACTTGATTGCTCGTGTTCCTGTTGTAGCTTCATACGTTTATCGG 812
|| || ||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 599 TTTGAGGATGCACTAAACTTGATTGCTCGTGTTCCTGTTCTAGCTTCATACGTTTATCGA 658
Query 813 AGGATGTACAAGGATGGTAGCATCATTCCATTAGATGATTCTTTGGATTATGGTGCAAAT 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGGATGTACAAGGATGGTAGCATCATTCCATTAGATGATTCTTTGGATTATGGTGCAAAT 718
Query 873 TTTTCACACATGCTGGGATTTGATAGTCCTCAGATGAAAGAGCTCATGAGGCTTTATGTC 932
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 719 TTTTCACACATGCTGGGATATGATAGTCCTCAGATGAAAGAACTCATGAGGCTTTATGTC 778
Query 933 ACTATCCACAGTGATCATGAAGGTGGAAATGTTAGTGCTCACGCTGGTCACCTGGTTGGG 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ACTATCCACAGTGATCATGAAGGTGGAAATGTTAGTGCTCACGCTGGTCACCTGGTTGGG 838
Query 993 AGTGCACTTTCAGATCCATATCTTTCATTTGCTGCTGCATTGAATGGTTTAGCTGGGCCA 1052
|||||||||||||||||||||||||||||||| ||||| || |||||||||||||| |||
Sbjct 839 AGTGCACTTTCAGATCCATATCTTTCATTTGCAGCTGCTTTAAATGGTTTAGCTGGTCCA 898
Query 1053 CTCCATGGTTTGGCTAATCAGGAAGTTTTGCTGTGGATCAAATTAGTTGTTGAGGAATGT 1112
|||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||
Sbjct 899 CTCCATGGTTTGGCTAATCAGGAAGTTTTGCTTTGGATCAAATCAGTTGTCGAGGAATGT 958
Query 1113 GGAGAAAGTATATCAAAGGAACAGCTAAAAGATTATGTCTGGAAAACGTTAAACAGTGGC 1172
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GGAGAAAATATTTCAAAGGAACAGCTAAAAGATTATGTCTGGAAAACGTTAAACAGTGGC 1018
Query 1173 AAGGTTGTTCCAGGATATGGCCATGGTGTTTTGCGTAAAACGGATCCAAGATATATATGC 1232
|||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||
Sbjct 1019 AAGGTTGTTCCAGGATATGGCCATGGTGTTTTACGTAAACCGGATCCAAGATATGTATGC 1078
Query 1233 CAAAGAGAGTTTGCCTTGAAGCATCTACCTGATGATCCTCTTTTTCAGCTGGTCTCAAAA 1292
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CAAAGAGAGTTTGCCTTGAAGCATCTACCTGATGATCCTCTTTTTCAGCTGGTCTCAAAG 1138
Query 1293 CTTTATGAAGTGGTGCCTCCTATTCTAACCGAGCTGGGAAAGGTCAAGAACCCGTGGCCT 1352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CTTTATGAAGTGGTGCCTCCTATTCTAACCGAGCTGGGAAAGGTCAAGAACCCGTGGCCT 1198
Query 1353 AACGTTGATGCTCATAGCGGAGTGCTTCTGAACTACTATGGTCTAACCGAAGCAAGATAC 1412
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1199 AACGTTGATGCTCATAGTGGAGTGCTGCTGAACTACTATGGTCTAACCGAAGCAAGATAC 1258
Query 1413 TACACGGTGCTTTTTGGCGTCTCAAGAAGTCTTGGAATCTGCTCGCAGCTGATATGGGAC 1472
||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1259 TACACAGTGCTTTTTGGAGTCTCAAGAAGTCTTGGCATCTGTTCGCAGCTGATATGGGAC 1318
Query 1473 AGGGCACTTGGACTGCCACTTGAGAGACCAAAGAGTGTAAACATGGACTGGCTCGATAAC 1532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 AGGGCACTTGGACTGCCACTTGAGAGACCAAAGAGTGTAAACATGGACTGGCTCGATAAC 1378
Query 1533 TTCACGCGCTTGAACCGCTAAGTTAATCCCTGACTGATGTTGGTCAAGGTTCTCTCTTTT 1592
|||| || |||||||| ||||||||||| || |||| |||||||| |||||||||||||
Sbjct 1379 TTCATGCTCTTGAACCACTAAGTTAATCGCTCACTGTTGTTGGTCGAGGTTCTCTCTTTC 1438
Query 1593 ATCACTTCAGCCTTCTCTTCCATTTGATTGGGTAGCTTTTAG-AGAT--a-a-a-aaaaa 1646
|||| ||||||||||||||||||||||||||||||||| | | | | | | |||||
Sbjct 1439 ATCAAACCAGCCTTCTCTTCCATTTGATTGGGTAGCTTTTGGCACTTTTAGAGAGAAAAA 1498
Query 1647 -aaCGATTTTTCGTCGAAATTTTGTT-CTACAGAGTTTTCATTTTGGTTCTTCTGCAAAA 1704
|||||||||||||| |||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct 1499 GAACGATTTTTCGTCTAAATTTTGTTTCTACAGAGTTTTCATTTTGGTACTTCTTCAAAA 1558
Query 1705 ACAATAAAGTCAAACAAGTAAAGAAACAGTCTTTCTCAGATTGAGACACC 1754
||||||| ||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1559 ACAATAATGTCAAACAAGTGAAGAAACAGTCTTTCTTAGATTGAGACACC 1608
> Ahg483560 jgi|Araly1|483560|fgenesh2_kg.4__2620__AT2G44350.2
Length=1779
Score = 1282 bits (694), Expect = 0.0
Identities = 1200/1434 (84%), Gaps = 75/1434 (5%)
Strand=Plus/Plus
Query 141 GTTGTGAGGTTTGAAAGAATGGTGTTTTTTCGCAGCGTATCAGCCATTT-CAAGACT-AC 198
||| |||| |||| |||||||||||||| ||||||||||| ||| ||| | || || |
Sbjct 98 GTTTTGAGTTTTG-GAGAATGGTGTTTTTCCGCAGCGTATCGGCC-TTTACTAGGCTGA- 154
Query 199 GGTCTCGAG--CA-GTGCAACAATCCTCACTTAGTAACTCCGTCAGATGG---C---T-C 248
||||||| | || | ||||||||| || || || || || ||||||||| | | |
Sbjct 155 GGTCTCGCGTCCAGGGGCAACAATCTTCGCTCAGCAATTCGGTCAGATGGATTCAGATGC 214
Query 249 -CA-CTCTTCTGAATTGGACTTGAAGTCGCAGATGCAAGAGATCATTCCAGAACAACAGG 306
| |||| | || ||||| ||||||||||| |||||||| | ||||| ||||| ||||
Sbjct 215 AGAGCTCTACCGACCTGGACCTGAAGTCGCAGCTGCAAGAGTTAATTCCGGAACAGCAGG 274
Query 307 ACCGTTTGAAGAAACTGAAATCAGAACAAGGAAAGGTTCC-AGTGGGGAACATCACCGTT 365
||||| ||||||||||||| |||||||| || |||| ||| | |||| |||||||| |||
Sbjct 275 ACCGTCTGAAGAAACTGAAGTCAGAACATGGGAAGG-TCCAACTGGGAAACATCACTGTT 333
Query 366 GATATGG-TACTTGGTGGAATGAGAGGGATGACTGGATTACTCTGGGAAACCTCATTGCT 424
||||||| || | ||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 334 GATATGGTTA-TCGGTGGGATGAGAGGGATGACTGGATTGCTTTGGGAAACCTCATTGCT 392
Query 425 TGATGCAGATGAGGGAATACGGTTTAGAGGCATGTCGATTCCTGAATGTCAGAAAA-TAT 483
||| | || ||||| || || ||||| ||| |||| |||||||| || || |||| |||
Sbjct 393 TGACCCGGAAGAGGGTATTCGCTTTAGGGGCTTGTCAATTCCTGAGTGCCA-AAAAGTAT 451
Query 484 TACCTTCAGCTGAGTCTGGAGAAGAGCCCTTGCCTGAGAGTCT-TCTGTGGCTTCTATTA 542
||||| | || ||||||||| ||| || || || ||| |||| | |||||||||| |||
Sbjct 452 TACCTACTGCCCAGTCTGGAGCAGAACCATTACCGGAGGGTCTGT-TGTGGCTTCTCTTA 510
Query 543 ACTGGAAAGGTGCC-AACTAAAGAGCAAGCT-AATGCTTTGTC-AACAGAGTTGGCTCA- 598
||||||||||| || | | |||||||||| | || || |||| || ||| ||||| |
Sbjct 511 ACTGGAAAGGTACCTAGC-AAAGAGCAAGTTGAA-GCACTGTCGAA-AGACTTGGC-AAG 566
Query 599 TCGTGCGGCTGTGCC-----A---G--C--T---ATAGATGCTTTGCCTTCAACAGCTCA 643
||||| |||||||| | | | | || |||||| ||||||| ||||||||
Sbjct 567 CCGTGCTGCTGTGCCAGATTATGTGTACAATGCCATCGATGCTCTGCCTTCCACAGCTCA 626
Query 644 TCCAATGACTCAATTTGCTAGTGGTGTTATGGCCCTTCAGGTTCAAAGTGAGTTTCAAAA 703
||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||
Sbjct 627 TCCAATGACTCAATTTGCTAGCGGTGTTATGGCCCTCCAGGTGCAAAGTGAGTTCCAAAA 686
Query 704 GGCGTATGAGCAGGGTGATATTTC-TAAGTCAAAGTACTGGGAACCAACCT-TCGAAGA- 760
||| |||||| | | || | ||| ||||||||||| |||||| ||||| | | || ||
Sbjct 687 GGCATATGAG-AATG-GA-A-TTCATAAGTCAAAGTTCTGGGAGCCAACATAT-GAGGAT 741
Query 761 TGCCCTAAACTTGATTGCTCGTGTTCCTGTTGTAGCTTCATACGTTTATCGGAGGATGTA 820
|| ||| ||| |||||||||||||||||||||||||| |||| |||||||| ||||||||
Sbjct 742 TG-CCTCAACCTGATTGCTCGTGTTCCTGTTGTAGCTGCATATGTTTATCGAAGGATGTA 800
Query 821 CAAGGATGGTAGCA-T-CATTCCATTAGATGATTCTTTGGATTATGGTGCAAATTTTTCA 878
||| ||||| | | | |||||| | |||| | ||||||||||||||||||||||||||
Sbjct 801 TAAGAATGGT-G-ATTCCATTCCCTCAGATAAATCTTTGGATTATGGTGCAAATTTTTCC 858
Query 879 CACATGCTGGGATTTGATAG-TCCTCAGATGAAAGAGCTCATGAGGCTTTATGTCACTAT 937
|||||| ||||||||||| | | ||||||||||||| ||||||||||| |||||||
Sbjct 859 CACATGTTGGGATTTGAT-GATGAAAAGATGAAAGAGCTTATGAGGCTTTACATCACTAT 917
Query 938 CCACAGTGATCATGAAGGTGGAAATGTTAGTGCTCACGCTGGTCACCTGGTTGGGAGTGC 997
||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||
Sbjct 918 CCACAGTGATCATGAAGGTGGAAATGTTAGTGCTCACACTGGTCACCTGGTCGGTAGTGC 977
Query 998 ACTTTCAGATCCATATCTTTCATTTGCTGCTGCATTGAATGGTTTAGCTGGGCCACTCCA 1057
|||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct 978 ACTTTCAGATCCATATCTGTCATTTGCAGCTGCATTAAATGGTTTAGCTGGGCCACTCCA 1037
Query 1058 TGGTTTGGCTAATCAGGAAGTTTTGCTGTGGATCAAATTAGTTGTTGAGGAATGTGGAGA 1117
||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||
Sbjct 1038 TGGTTTGGCTAATCAGGAAGTTTTGCTTTGGATCAAACAAGTTGTCGAGGAATGTGGAGA 1097
Query 1118 A-A-GTATATCAAAGGAACAGCTAAAAGATTATGT-CTGGAAAACGTTAAACAGTGGCAA 1174
| | |||| |||| ||||| | ||||| ||||| | | ||||| ||||||||||||||
Sbjct 1098 AGACGTATCG-AAAG-AACAGTTGAAAGAATATGTTCAG-AAAACATTAAACAGTGGCAA 1154
Query 1175 GGTTGTTCCAGGATATGGCCATGGTGTTTTGCGTAAAACGGATCCAAGATATATATGCCA 1234
||||||||| |||||||| || |||||| |||| || || |||||||||||| |||||||
Sbjct 1155 GGTTGTTCCGGGATATGGACACGGTGTTCTGCGCAATACTGATCCAAGATATGTATGCCA 1214
Query 1235 AAGAGAGTTTGCCTTGAAGCATCTACCTGATGATCCTCTTTTTCAGCTGGTCTCAAAACT 1294
|||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||| ||
Sbjct 1215 AAGAGAATTTGCCTTGAAGCATCTACCTGATGACCCTCTTTTCCAGCTGGTGTCAAAGCT 1274
Query 1295 TTATGAAGTGGTGCCTCCTATTCTAACCGAGCTGGGAAAGGTCAAGAACCCGTGGCCTAA 1354
||||||||| ||||||||| |||| || ||||| |||||||| |||||||||||||| ||
Sbjct 1275 TTATGAAGTTGTGCCTCCTGTTCTCACTGAGCTTGGAAAGGTGAAGAACCCGTGGCCAAA 1334
Query 1355 CGTTGATGCTCATAGCGGAGTGCTT-CTGAACTACTATGGTCTAACCGAAGCAAGATACT 1413
||||||||||| || || || ||| |||||| |||||||||||||||||||||| ||||
Sbjct 1335 TGTTGATGCTCACAGTGGGGT-CTTGCTGAACCACTATGGTCTAACCGAAGCAAGGTACT 1393
Query 1414 ACACGGTGCTTTTTGGCGTCTCAAGAAGTCTTGGAATCTGCTCGCAGCTGATATGGGACA 1473
|||| ||||| ||||| || ||||| |||||||| |||||||| ||||| |||||||||
Sbjct 1394 ACACCGTGCTCTTTGGTGTTTCAAGGAGTCTTGGCATCTGCTCTCAGCTAATATGGGACC 1453
Query 1474 GGGCACTTGGACT-GCCACTTGAGAGACCAAAGAGTGTAAACA-TGGACTGGCT 1525
| || |||||||| || ||||||||| ||||||||||| | || ||||||||||
Sbjct 1454 GAGCTCTTGGACTTGC-ACTTGAGAGGCCAAAGAGTGTTA-CAATGGACTGGCT 1505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65819943360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5