BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60110.1
Length=2385
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939046 jgi|Araly1|939046|scaffold_503237.1 2813 0.0
> Ahg939046 jgi|Araly1|939046|scaffold_503237.1
Length=1973
Score = 2813 bits (1523), Expect = 0.0
Identities = 1843/1991 (93%), Gaps = 48/1991 (2%)
Strand=Plus/Plus
Query 151 caaaCGAGCGTATTGTTATGAAGGAGGACGAAGAAGAAGAAGCAGTGATATCGAACGGCA 210
||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 4 CAAACGAGCGTGTTGTTATGAAGGA-G--GAAGAAGAAGAAGCAGTGATATCGAACGGCA 60
Query 211 TGAACGACGACGACGATACTAACAATATTAACAACAGTTCCACTGAATTTGATAACAATC 270
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 61 TGAACGACGACGACGATACTAACAATATT---AACAGTTCCAGTGAATTTGATAACAATC 117
Query 271 GTATC-G-GA----GACGGAGACGATAACAGTAATCTGAATCAGATCAAACAAGTATGGG 324
||||| | || ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 118 GTATCGGAGACGGTGACGGAGACGATAACTGTAATCTGAATCAGATCAAACAAGTATGGG 177
Query 325 GAACGTGGGAGGAGTTGGTGTTAACATGCGCCGTTAAACGTCATGCTTTTTCCGATTGGG 384
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 178 GAACGTGGGACGAGTTGGTGTTAACATGCGCCGTTAAGCGTCATGCTTTTTCCGATTGGG 237
Query 385 ACTCCGTCGCTAAGGAGGTTCAGGCTCGTTCCCGGAGTTCTCTCATCGTTTCCGCCGTCA 444
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 238 ACTCCGTCGCTAAGGAGGTTCAGGCTCGTTCCCGGAGTTCTCTCATCGTCTCCGCTGTCA 297
Query 445 ATTGCAGGCTTAAGTATCAAGATCTCAAACGTAGGTTCCAAGATTCCGTCGACGTCGGAG 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ATTGCAGGCTTAAGTATCAAGATCTCAAACGTAGGTTCCAAGATTCCGTCGACGTCGGAG 357
Query 505 ACGAAAATACCGAAGCGGCGGCGAAC-GAGGAGGATGAAGTCGGTGAAATCTCTTGGCTC 563
| || || | |||||||||| || | |||||||||||||||||||||||| ||||||||
Sbjct 358 AAGAGAACAGCGAAGCGGCGACG-GCGGAGGAGGATGAAGTCGGTGAAATCCCTTGGCTC 416
Query 564 GAGCAGTTACGGAGTCTTCATATGGCGGAGCTCCGCCGTGAGGTTCAACGATGTGACGAC 623
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 417 GAGCAGTTACGGAGTCTTCGTGTGGCGGAGCTCCGCCGTGAGGTTCAACGATGTGACGAC 476
Query 624 TCGATACTGTCGCTTCAGTTAAAAGTTAAGAAACTAGAGGAGGAGAAAGACGGAGATGAT 683
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 477 TCGATACTGTCGCTTCAGTTAAAAGTTAAGAAATTAGAGGAGGAGAAAGACGGAGATGAT 536
Query 684 GGGGACAATAAACCAGATCTGAAAAACGACGAAACTAAACCGGTGAGAGTTAACCGGGAA 743
|| ||||||||||||||||||||||| || ||||||||||||| |||| |||||||||||
Sbjct 537 GGAGACAATAAACCAGATCTGAAAAAGGATGAAACTAAACCGGCGAGACTTAACCGGGAA 596
Query 744 ACGACGGAGTCTGACCGGGATGATAATAGGTCGATGAACGAGTCCAACTCAACTGCCTCC 803
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 597 ACGACGGAGTCTGACCGGGAGGATAATAGGTCGATGAACGAGTCCAACTCGACTGCCTCC 656
Query 804 GTCGATAAAATCGCCGATCACGACCGATTAGACGGAGATAAAATGGTTAAGGCTAACGAG 863
||||||||||| |||||||||||| ||||||||||||||||||||||| || || |||||
Sbjct 657 GTCGATAAAATAGCCGATCACGACGGATTAGACGGAGATAAAATGGTTCAGACTGACGAG 716
Query 864 AATTCGAGAAATCCAGATCCCGATCCGGTTAATAAGGCGGAGACGCCGGAGGAGGAAGAA 923
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 717 AATTCGAGAAATCCAGATCCCGATCCGGTTAATAAGGCGGCGGCGCCGGAGGAGGAAGAA 776
Query 924 AGAACGGTTAGTAAAAGATCGGAAATGAGTAACTCAGGCGAGTTGGATGAATCGGGAACG 983
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 777 CGCACGGTTAGTAAAAGATCGGAAATGAGTAACTCGGGCGAGTTGGATGAATCGGGAACG 836
Query 984 TCCAATTGTCTTGGAAAGAGGAAAGGACAGAAATACAGAAGCGGCGGAGGCGGCGGTGGT 1043
|||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 837 TCCACTGGTCCTGGAAAGAGGAAAGGACAGAAATACAGAAGCGGCGGAGGCGGCGGTGAT 896
Query 1044 GTCAAATCGGCCGGCGATAAATCACAGCCGTTGATAGATATCATTAAGCTTATTCGGTCT 1103
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 897 ATCAAATCGGCCGGTGATAAATCACAGCCGTTGATAGATATCATTAAGCTAATTCGGTCT 956
Query 1104 CATCCCCGTGGTTCCGTGTTCGAATCCCGGCTTAGGAGCCAGGACACTAAGGATTACAAG 1163
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 957 CATCCCCGTGGTTCCGTGTTCGAATCCCGGCTTAGGAGCCAGGAGACAAAGGATTACAAG 1016
Query 1164 AGGTTGATAAGGCAGCATTTGGACATGAAGACAATAGAGAAGAAGATGGAGAAAGGATCT 1223
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1017 AGGTTGATAAGGCAGCATTTGGACATCAAGACAATAGAGAAGAAGATTGAGAAAGGATCT 1076
Query 1224 TATGTTTCTTCAAGCCTCTCTTTTTACAGAGACCTCAAGCTTCTCTTCACAAACGCCATT 1283
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1077 TATGTTTCTTCAAGCCTTTCTTTCTACAGAGACCTCAAGCTTCTCTTCACAAACGCCATT 1136
Query 1284 GTCTTCTTTCCTACATCTTCCTCTGAATCCATAGCTGCTCAAGAGCTAAGAACACTCGTC 1343
||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 1137 GTCTTCTTTCCTACATCTTCCTCAGAATCCATGGCTGCTCAAGAGCTAAGAACCCTCGTC 1196
Query 1344 TCAAACGAGATGAAGAAACGAACGGGAAAAT-TGGGTCACTGTGTCATCAAATCAGAGGC 1402
|| |||||||||||||||||||||||||||| ||| |||| |||||||||| |||||||
Sbjct 1197 TCTAACGAGATGAAGAAACGAACGGGAAAATCTGG-TCACAATGTCATCAAAGCAGAGGC 1255
Query 1403 TGAATCTT-CGGTTTCTAGACAGAAATCCTCTGTTCTTTCTCTTGTTCCCTGTAAAAAGA 1461
|||||| || | ||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1256 TGAATCAAACG------A-ACAGAAATCCTCTGTTCTTCCTCTTGTTGCCTGTAAAAAGA 1308
Query 1462 AGAGCTCTGCTTTGAAAAAGACGTCTCCTTCTTCAAGCTCTAGACAAAAAGATGAGAAGA 1521
|||| ||||||| ||||||||| ||||||| || |||| |||||||||||||||||
Sbjct 1309 AGAGTTCTGCTTCAAAAAAGACGCCTCCTTCA--AAT-TCTAAACAAAAAGATGAGAAGA 1365
Query 1522 AATCTCAGGAAGTTTCGGAGGAGAAGATTGTGACTACTACTGCTACTACTAGTGCAAGAA 1581
||||||||||||| || |||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1366 AATCTCAGGAAGTCTCAGAGGAGAAGACTGTGACTACTACTACTACTACTAGTGCAAGAA 1425
Query 1582 GCTCGAGGAGAACGAGCAAAGAGATTGCTGTTGTTGCTAAAGATACTAAAACGGGAAGAG 1641
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1426 GCTCTAGGAGAACGAGCAAAGAGATCGCTGTTGTTGCTAAAGATACTAAAACGGGAAGAG 1485
Query 1642 CCAAGAATAATATTAAGAAACAAACGGATACGAAAACAGAATCATCTGACGATG---ATG 1698
|||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||
Sbjct 1486 CCAAGAATAATAATAAGAAACAAAAGGATACGAAAACAGAATCATCTGATGATGGTGATG 1545
Query 1699 ATGATGAGAAGGAAGAGAATTCTAAAACAGAGAAGAAGACAGTAGCG---G-A-----TA 1749
||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 1546 ATGATGAGAAGGAAGAGAATTCTAAAACAGAGAAGAAGACAGTAGCGATAGCAACAGATA 1605
Query 1750 AGAAGAAGAGCGTGGCTGATTTCTTGAAGAGGATAAAGAAGAACTCTCCACagaaaggaa 1809
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1606 AGAAGAAGAGCGTGGCTGATTTTTTGAAGAGAATAAAGAAGAACTCTCCACAGAAAGGAA 1665
Query 1810 aagaaacaacgagtaaaaatcagaagaagaatgatggaaacgttaagaaagagaaCGATC 1869
|||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||
Sbjct 1666 AAGAAACAACGAGTAAAAATCAGAAGAAGAGTAATGGAAATGTTAAGAAAGAGAACGATC 1725
Query 1870 ATCAGAAGAAGAGTGATGGAAACGTTAAGAAAGAGAACAGTAAAGTGAAACCGAGGGAAT 1929
||||||||||| |||||||| | |||||||||||||||||||| ||||||||||||||
Sbjct 1726 TTCAGAAGAAGACCGATGGAAATGCTAAGAAAGAGAACAGTAAAGCGAAACCGAGGGAAT 1785
Query 1930 TGAGGAGTA---GTACGGGTAAAAAGAAGGTTGAGGTAGAGA---ATAATAATAGTAAGA 1983
||||||||| |||| ||||||||||||| ||||||||||| ||||||||| |||||
Sbjct 1786 TGAGGAGTAACAGTACTGGTAAAAAGAAGGCTGAGGTAGAGACTGATAATAATAATAAGA 1845
Query 1984 GCTCATCGAAACGAAAACAAACGAAAGAAACAGCAGAGGTGGCTACTGGAAAACGAGGTA 2043
| |||||||||||||||||||| ||||||||||||||| | || |||||||||||||
Sbjct 1846 GTTCATCGAAACGAAAACAAACTCAAGAAACAGCAGAGG---CAACGGGAAAACGAGGTA 1902
Query 2044 GGGAATCGGGAAAAGACGATAAACAGCCAAGGAAAAGAAGCAGAAGATGAAACTGAACTA 2103
| ||||| ||||||||| |||| ||||||| ||||||||||||||||||||||| || ||
Sbjct 1903 GAGAATCCGGAAAAGACAATAAGCAGCCAAAGAAAAGAAGCAGAAGATGAAACTAAATTA 1962
Query 2104 GCCTGTGGTTA 2114
|||||||||||
Sbjct 1963 GCCTGTGGTTA 1973
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89854887955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5