BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60120.1
Length=1809
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486477 jgi|Araly1|486477|fgenesh2_kg.5__2469__AT3G60120.1 2529 0.0
Ahg902471 jgi|Araly1|902471|Al_scaffold_0004_3121 1351 0.0
> Ahg486477 jgi|Araly1|486477|fgenesh2_kg.5__2469__AT3G60120.1
Length=1602
Score = 2529 bits (1369), Expect = 0.0
Identities = 1530/1608 (95%), Gaps = 9/1608 (1%)
Strand=Plus/Plus
Query 205 ATGTACTCGAAGAAAAACTCGTTCGGCCGATCAGATTTCCCAGAGGGTTTCCT-TTTCGG 263
|||||||||||||||||||| ||||||||||| ||||| || ||||||||||| ||| ||
Sbjct 1 ATGTACTCGAAGAAAAACTCTTTCGGCCGATCTGATTTTCCTGAGGGTTTCCTCTTT-GG 59
Query 264 TACAGCTTCATCGGCTTACCAATATGAAGGAGCCAGAAACGAAGCTCCTCGAGGAGAGAG 323
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 60 TACGGCTTCATCGGCTTACCAATATGAAGGAGCCATAAACGAAGCTCCTCGAGGAGAGAG 119
Query 324 TGTTTGGGACACATTTGTTCGCAAATATCCAGAGAGAAATTGCTACTCTAATGCGGACCA 383
|||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 120 TGTTTGGGACACATTTGTTCGCAAATATCCAGAGAGAAATTGCTACTCTACCGCAGATCA 179
Query 384 AGCAATCGAGTTCTATAACCATTACAAGGACGATATCCAGAGAATGAAGGATATTAACAT 443
|||||||||||||||||| |||||||| || |||||||| ||||||||||||||||||||
Sbjct 180 AGCAATCGAGTTCTATAAGCATTACAAAGAAGATATCCAAAGAATGAAGGATATTAACAT 239
Query 444 GGATGCTTTCAGATTCTCTATCTCTTGGCCTA-GGATTTTTCCTCTTGGAAAGAAAAGCA 502
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 240 GGATGCTTTCAGATTCTCTATCTCTTGGCC-ACGGATTTTTCCTCTTGGAAAGAAAAGCA 298
Query 503 AAGGAGTGAACAAAGAAGGAATACAA-TTCTATAACGATCTCATCGATGAACTCCTCGCT 561
|||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||
Sbjct 299 AAGGAGTGAACAAAGAAGGAAT-CAAATTCTATAACGATCTCATCGATGAGCTCCTCGCG 357
Query 562 AACGGAATAACACCTCTCGCCACTTTATTTCACTGGGATACTCCTCAAGCACTTGAAGAT 621
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 358 AACGGAATAACACCACTCGCCACTTTATTTCATTGGGATACTCCTCAAGCACTTGAAGAA 417
Query 622 GAATACAGTGGATTTTTAAGCGAAGAAGCTGTTGATGACTTCAAGGATTTTGCGGCCTTA 681
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 418 GAATACAATGGATTTTTAAGCGAAGAAGCTGTTGATGACTTCAAAGATTTTGCGGCCTTA 477
Query 682 TGTTTTGAGGAGTTTGGCGACCGTGTAAAATTGTGGGTCACACTAAACGAACCATGGGTG 741
||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 478 TGTTTCGAAGAGTTTGGCGACCGTGTAAAGTTGTGGGTCACACTAAACGAACCATGGGTG 537
Query 742 TACAGTATTGGTGGCTATGACACGGGAAGAAAAGCCCCCGGACGTGCCTCCAAATACATG 801
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 538 TATAGTATTGGTGGTTATGACACGGGAAGAAAAGCGCCCGGACGTGCCTCCAAATACATG 597
Query 802 AACGAAGCAGCCGTGGCAGGAGAATCTGGTCTCGAGGTTTACACTGTTAGTCACAATCTA 861
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AACGAAGCAGCCGTGGCCGGAGAATCTGGTCTCGAGGTTTACACTGTTAGTCACAATCTA 657
Query 862 CTTCTGGCTCACGCCGAAGCTGTTGAGGTCTTCAGGAACAATCCCAAATGTAAAGATGGC 921
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 658 CTTCTGGCTCACGCCGAAGCCGTTGAAGTCTTCAGGAACAATCCCAAATGTAAAGATGGC 717
Query 922 AAGATCGGTATCGCTCATTGTCCCGTATGGTTCGAGCCTTATGACTCGAACTGCCCTAAA 981
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 718 AAGATCGGTATCGCTCATTGTCCCGTATGGTTCGAACCTTATGACTCGAACTGCCCTAAA 777
Query 982 GACATAGAAGCATGCGAACGAGCTATGGAGTTTATGTTTGGATGGCACATGGATCCTACG 1041
|| | |||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 778 GATAAAGAAGCATGCGAACGAGCTATGGAGTTTATGTTTGGCTGGCACATGGATCCCACG 837
Query 1042 GTGTATGGAGATTACCCTGCAGTCATGAAAAAATCGATCGGAAAAAGATTACCATCATTT 1101
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GTGTATGGAGATTACCCTGAAGTCATGAAAAAATCGATCGGAAAAAGATTACCATCATTT 897
Query 1102 ACCGCAGCACAATCCAAGAAGCTTAGAGGATCTTTTGATTTCGTTGGGGTGAATTATTAC 1161
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 898 ACCGCAGCACAATCCAAGAAGCTTATAGGATCTTTTGATTTCGTTGGGGTGAATTATTAC 957
Query 1162 AGTGCTTTCTACGTCAAAAATATTGATGAAGTGAATCATGACAAGCCCAATTGGAGATCA 1221
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 958 AGTGCTTTCTACGTCAAAAATATTGATGAAGTGAACCATGACACTCCCAATTGGAGATCA 1017
Query 1222 GACGCACGCATCGAATGGAGAAAAGAAAACAACGCAGGGCAAACATTAGGTGTAAGAGGT 1281
|||||||||||||||||||||||| ||||||| ||||| || ||||||||||||||||||
Sbjct 1018 GACGCACGCATCGAATGGAGAAAACAAAACAAAGCAGGACAGACATTAGGTGTAAGAGGT 1077
Query 1282 GGTTCGGAATGGGACTTTCTATATCCACAAGGCCTTAGAAAGTTTCTAAATTATGCCAAG 1341
||||| |||||||||||||||||||||||||| ||||||||||||||||| |||| ||||
Sbjct 1078 GGTTCAGAATGGGACTTTCTATATCCACAAGGACTTAGAAAGTTTCTAAACTATGGCAAG 1137
Query 1342 AATAAATATGAAAGCCCGAAATTTATGATTACCGAAAACGGACACTGTGATATAGATTAT 1401
||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct 1138 AATAAATATGAAAGCCCGAAATTTATGATCACTGAAAACGGACACTGTGATAGAGATTAC 1197
Query 1402 GAGAAAAAGCCTAAACTTTCTAACTTGATGGATCTCCAAAGGACAGAGTACCACAAGAAA 1461
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1198 GAGAAAAAGCCGAAACTTTCTAACTTGATGGACCTGCAAAGGACAGAGTACCACAAGAAA 1257
Query 1462 CATCTCCAAAGCATCCAACAAGCCATCCAGGAGGATGGGGTTGTAGTTGAAGGATACTTT 1521
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1258 CATCTCCAAAGCATCCAACAAGCCATCCAGGAGGATGGAGTTGTAGTTGAAGGATACTTT 1317
Query 1522 GCGTGGTCATTACTAGACAATTGTGAATGGAACGCCGGTTATGGAGTTCGATATGGACTA 1581
| ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1318 ACTTGGTCGTTACTAGACAATTGTGAATGGAACGCCGGTTATGGAGTCCGATACGGACTA 1377
Query 1582 TTCTACGTCGATTATAACAATGGACTAAAACGTTTCCCGAAAATGTCGGCGATGTGGTTC 1641
|||||||||||||| ||||| || ||||||||||| || |||||||| ||||||||||||
Sbjct 1378 TTCTACGTCGATTACAACAACGGGCTAAAACGTTTTCCAAAAATGTCAGCGATGTGGTTC 1437
Query 1642 Aaagaattcttgaagagagaagaagaaattgaagattcagaagaagaagagtacgtgttg 1701
||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1438 AAAGAGTTCTTGAAGAGAGAAGAAGAAATTGAAGATTCAGAAGAAGA-G--TACGTGTTG 1494
Query 1702 aagtcaacaatgaacaagaagagaTTCTTATTAGCAACTGGTTCATCAGCTTCATGCTTT 1761
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1495 AAGTCAACAATGAACAAGAAGAGATTCTTATTAGCAACTGGTTCATCAGCTTCATGTTTT 1554
Query 1762 ATTCCTAAGATGTCTGAATCTTCTAAAGCCCTCGAACTATTATTCTAG 1809
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 ATTCCTAAGATGTCTGAATCTTCTAAAGCCCTCGAACTATTATTCTAG 1602
> Ahg902471 jgi|Araly1|902471|Al_scaffold_0004_3121
Length=1620
Score = 1351 bits (731), Expect = 0.0
Identities = 1339/1627 (82%), Gaps = 64/1627 (4%)
Strand=Plus/Plus
Query 195 AAGG-AAGAATATGTACTCGAAGAAAAACTCGTTCGGCCGATCAGATTTCCCAGAGGGTT 253
|||| ||||| || ||| || | |||| ||||| |||||||| |||||||| || || |
Sbjct 8 AAGGAAAGAAGATTTACGCGGATAAAAGTTCGTTTGGCCGATCCGATTTCCCTGAAGGCT 67
Query 254 TCCTT-TTCGGTACAGCTTCATCGGCTTACCAATATGAAGGAGCCAG-AAACGAAG-CTC 310
| ||| || || ||||| ||||||||||||||||| ||||| | | | ||||| | ||
Sbjct 68 T-CTTGTTTGGGACAGCCTCATCGGCTTACCAATACGAAGG-GGCTGTTAACGATGCCT- 124
Query 311 CTCGA-GGAGAGAGTGTTTGGGACACATTTGTTCGCAAATATCCAGAGAGAAATTGCTAC 369
||||| || | ||||||||||| || ||||| ||||| ||||||| || ||||| |||
Sbjct 125 CTCGAGGGCTA-AGTGTTTGGGATACTTTTGTCCGCAAGCATCCAGAAAGGAATTGTTAC 183
Query 370 TCTAATGCGGACCAAGCAATCGAGTTCTATAACCATTACAAGGACGATATCCAGAGAATG 429
||| ||||||||||||| | ||||| ||| ||||||||||||| ||||| || ||||||
Sbjct 184 TCTGATGCGGACCAAGCTGTGGAGTTTTATCACCATTACAAGGAAGATATTCAAAGAATG 243
Query 430 AAGGATATTAACATGGATGCTTTCAGATTCTCTATCTCTTGGCCTAGGATTTTTCCTCTT 489
|| ||||| || |||||| | ||||||||||| ||||| |||||| ||||| |||||| |
Sbjct 244 AAAGATATCAATATGGATTCATTCAGATTCTCAATCTCATGGCCTCGGATTCTTCCTCAT 303
Query 490 GGAAAGAAAAGCAAAGGAGTGAACAAAGAAGGAATAC-AATTCTATAACGATCTCATCGA 548
||||||||||| | |||||||||||| || ||||| | |||| |||||||| ||||||||
Sbjct 304 GGAAAGAAAAGTAGAGGAGTGAACAAGGAGGGAAT-CAAATTTTATAACGACCTCATCGA 362
Query 549 TGAACTCCTCGCTAACGGAATAACACCTCTCGCCACTTTATTTCACTGGGATACTCCTCA 608
||||||||| ||||| ||||| || |||||||| ||||| || || ||||| ||||| ||
Sbjct 363 TGAACTCCTAGCTAATGGAATCACTCCTCTCGCGACTTTGTTCCATTGGGACACTCCACA 422
Query 609 AGCACTT-GAAGATGAATACAGTGGATTTT-TAAGCGAAGAAGCTGTTGATGACTTCAAG 666
||| ||| ||||||||||||| ||| |||| |||||||| ||| ||||||||| ||| |
Sbjct 423 AGC-CTTAGAAGATGAATACAATGG-TTTTCTAAGCGAAAAAGTTGTTGATGATTTC-CG 479
Query 667 -GATTTTGCGGC-CT-TATGTTTTGAGGAGTTTGGCGACCGTGTAAAAT-TGTGGGTCAC 722
|| || || | || ||||||||||||| ||||||||||||||||| | | ||||| ||
Sbjct 480 CGA-CTT-CGCCACTATATGTTTTGAGGAATTTGGCGACCGTGTAAAGTAT-TGGGTGAC 536
Query 723 ACTAAACGAACCATGGGTGTACAGTATTGGTGGCTATGACA-CGGGAAGAAAAGCCCCCG 781
|||||| || || ||||| || |||||||| || ||||| | |||| |||||||| || |
Sbjct 537 ACTAAATGAGCCGTGGGTTTATAGTATTGGCGGGTATGATACCGGG-AGAAAAGCTCCTG 595
Query 782 GACGTGCCTCCAAATACATGAACGAAGCAGCCGTGGCAGGAGAATCTGGTC-TCGAGGTT 840
| ||||||||||||||||||||||||||||| |||| || ||||| |||| | ||||||
Sbjct 596 GTCGTGCCTCCAAATACATGAACGAAGCAGCTTTGGCTGGTGAATCGGGTCGT-GAGGTT 654
Query 841 TACACTGTTAGTCACAATCTACTTCT-GGCTCACGCCGAAGCTGTTGAGGTCTTCAGGAA 899
|| | |||||||||||||||||| || |||||| ||||| |||||||| ||||||||| |
Sbjct 655 TATAATGTTAGTCACAATCTACT-CTTGGCTCATGCCGAGGCTGTTGAAGTCTTCAGGGA 713
Query 900 CAATCCCAAA-TGTAAAGATGGCAAGATCGGTATCGCTCATTGTCCCGTATGGTTCGAGC 958
|| |||||| ||||||||||| || || ||||| || |||||||| || |||||||| |
Sbjct 714 TAA-CCCAAAGTGTAAAGATGGGAAAATTGGTATTGCACATTGTCCGGTCTGGTTCGAAC 772
Query 959 CTTATGACTCGAACTGCCCTAAAGA-CATAGAAGCA-TGCGAACGAGCTATGGAGTTTAT 1016
|||||||||||||||| |||||||| || |||||| | ||| || || ||||| |||||
Sbjct 773 CTTATGACTCGAACTGTCCTAAAGATCA-AGAAGCGGT-CGAGCGTGCCATGGAATTTAT 830
Query 1017 GTTTGGATGGCACATGGATCCTACGGTGTATGGAGATTACCCTGCAGTCATGAAAAAATC 1076
||||||||||||||||||||| ||||| ||||||||||| || | |||||||||||| |
Sbjct 831 GTTTGGATGGCACATGGATCCAACGGTCTATGGAGATTATCCGGAAGTCATGAAAAAGTT 890
Query 1077 GATCGGAAAAAGATTACCATCATTTACCGCAGCACAATCCAAGAAGCTTAGA-GGATCTT 1135
||| |||||||||||||| || ||||| ||||| ||||| |||||| ||| | |||||||
Sbjct 891 GATTGGAAAAAGATTACCGTCGTTTACTGCAGCGCAATCTAAGAAG-TTAAAAGGATCTT 949
Query 1136 TTGATTTCGTTGGGGTGAATTATTACAGTGC-TTTCTACGTCAAAAATATTGATGAAGTG 1194
|||| |||||||| | |||||||||||||| ||| ||||| |||||| ||| ||| |||
Sbjct 950 TTGACTTCGTTGGAGCAAATTATTACAGTGCCTTT-TACGTTAAAAATGTTGTTGACGTG 1008
Query 1195 AATCATGACAAGCCCAATTGGAGATCAGACGCACGCATCGAATGGAGAAAAGAAAACAAC 1254
||| | | | ||| |||||||||| ||||||| ||||||||||| |||| |||||||
Sbjct 1009 GATCCTAATATTCCCGATTGGAGATCTGACGCACACATCGAATGGAAAAAACAAAACAAA 1068
Query 1255 GCAGGGCAAACATTAGGTG-TAAGAGGTGGTTCGGAATGGGACTTTCTATATCCACAAGG 1313
||||| ||||| || ||| || |||||||||| |||||||||||| |||| ||||||||
Sbjct 1069 GCAGGACAAACTTTGGGTCCTA-GAGGTGGTTCAGAATGGGACTTTTTATACCCACAAGG 1127
Query 1314 CCTTA-GAAAGTTTCTAAATTATGCCAAGAATAAATATGAAAGCCCGAAATTTATGATTA 1372
||| | |||||| | ||||||||| || | ||| | |||||| ||||||||||| |
Sbjct 1128 G-TTAAGGAAGTTTTTGGTTTATGCCAAAAACAGATACGGAAGCCCTAAATTTATGATAA 1186
Query 1373 CCGAAAACGGACACTGTGATATAGATTATGAGAAAAAGCCTAAACTTTCTAACTTGATGG 1432
| ||||| ||||| || ||| |||| |||||||| ||| | |||||||| || |||||||
Sbjct 1187 CTGAAAATGGACATTGCGATTTAGACTATGAGAAGAAGGCAAAACTTTCAAATTTGATGG 1246
Query 1433 ATCTCCAAAGGACAGAGTACCACAAGAA-ACATCTCCAAAGCATCCAACAAGCCATCCAG 1491
||||||| ||||||||||||||||| || |||||||||||||||||| ||||||||| ||
Sbjct 1247 ATCTCCAGAGGACAGAGTACCACAA-AATACATCTCCAAAGCATCCACCAAGCCATCAAG 1305
Query 1492 GAGGATGGGGTTGTAGTTGAAGGATACTTTGCGTGGTCATTACTAGACAATTGTGAATGG 1551
|| ||| | ||| ||| |||||||||| ||| |||||||| || || ||||| ||||||
Sbjct 1306 GAAGATAGTGTTCAAGTAGAAGGATACTATGCATGGTCATTGCTCGATAATTGCGAATGG 1365
Query 1552 AACGCCGGTTATGGAGTTCGATATGGACTATTCTACGTCGATTATAACAATGGACTAAAA 1611
||||| ||||||||||||||||| ||| | |||||||| || || ||||| || ||||||
Sbjct 1366 AACGCTGGTTATGGAGTTCGATACGGATTGTTCTACGTAGACTACAACAACGGTCTAAAA 1425
Query 1612 CGTT-TCCCGAAAATGTCGGCGATGTGGTTCAaagaattcttgaagagagaagaagaaat 1670
|||| |||| |||||||| || |||||||||||||| || ||||||| | | ||||| ||
Sbjct 1426 CGTTATCCC-AAAATGTCTGCAATGTGGTTCAAAGAGTTTTTGAAGA-A-A-GAAGATAT 1481
Query 1671 tgaagattcagaagaag-aagag-tacgt-g--tt--gaagtcaacaatgaacaagaaga 1723
|| ||||| || |||| ||| | | ||| | || | || ||||| ||| | |||||
Sbjct 1482 CGAGGATTCGGA-GAAGGAAG-GCT-CGTTGAATTTTGTTGTTAACAA-GAAGAGGAAGA 1537
Query 1724 gaTTCTTATTAGCAACTGGTTCATCAGCTTCATGCTTTATTCCTAAGATGTCTGAATCTT 1783
|||||||| | | ||||||||| ||| |||||||| ||||||||||||||||| |
Sbjct 1538 GATTCTTAACATCTTCTGGTTCATT---TTCCTGCTTTATACCTAAGATGTCTGAATCCT 1594
Query 1784 CTAAAGC 1790
| |||||
Sbjct 1595 CGAAAGC 1601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67914906835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5