BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60130.1
Length=1832
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486479 jgi|Araly1|486479|fgenesh2_kg.5__2471__AT3G60130.1 2510 0.0
> Ahg486479 jgi|Araly1|486479|fgenesh2_kg.5__2471__AT3G60130.1
Length=1682
Score = 2510 bits (1359), Expect = 0.0
Identities = 1573/1674 (94%), Gaps = 23/1674 (1%)
Strand=Plus/Plus
Query 24 TTTTTCACAACCAAATTTCCATTATAAATCaaaaaataaaaaCTT-AATTAG-TTTTTAC 81
|||||||||||||||||| |||| |||||| ||||||||||| || |||||| |||||||
Sbjct 1 TTTTTCACAACCAAATTT-CATTGTAAATC-AAAAATAAAAA-TTGAATTAGTTTTTTAC 57
Query 82 AGAAG-AAAAGAAAACAATGAGAGGTAAATTTCTAAGTTTACTGTTGCTCATTACTTTGG 140
||||| |||| |||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 58 AGAAGAAAAAAAAAAGAATGAGAAGTAAATTTCTAAGTTTACTGTTGCTCATTACTTTGG 117
Query 141 CCTGCATTGGAGTTTCCGCCAAGAAGCATTCCACAAGGCCTAGATTAAGAAGAAATGA-T 199
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
Sbjct 118 CCTGCATTGGAGTTTCCGCCAAGAAGCATTCCTCAAGGCCTAGATTGAGAAGAAATGACT 177
Query 200 TTCCCACAAGATTTCGTTTTTGGATCTGCTACTTCTGCTTATCAGTGTGAAGGAGCTGCA 259
|| ||| |||||||| ||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 178 TT-CCAGAAGATTTCATTTTTGGATCTGCAACTTCTGCTTATCAGTGTGAAGGTGCTGCT 236
Query 260 CATGAAGATGGTAGAGGTCCAAGTATCTGGGACTCCTTCTCTGAAAAATTCCCAGAAAAG 319
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 237 CATGAAGATGGTAGAGGTCCAAGTATCTGGGACTCTTTCTCTGAAAATTTCCCAGAAAAG 296
Query 320 ATAATGGATGGTAGTAATGGGTCCATTGCAGATGATTCTTACAATCTTTACAAGGAAGAT 379
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 297 ATAATGGATGGTAGTAATGGGTCCATTGCAGATGATTCTTACAACCTTTACAAGGAAGAT 356
Query 380 GTGAATTTGCTGCATCAAATTGGCTTCGATGCTTACCGATTTTCGATCTCATGGTCACGG 439
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 357 GTGAATTTGCTGCATCAAATTGGCTTTGATGCTTACCGATTCTCGATCTCATGGTCCCGG 416
Query 440 ATTTTGCCTCGTGGGACTCTAAAGGGAGGAATCAACCAGGCTGGAATTGAATATTATAAC 499
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||
Sbjct 417 ATTTTGCCTCGTGGGACTATAAAGGGAGGAATCAACCAGGCTGGAATTGACTATTACAAC 476
Query 500 AACTTGATTAATCAACTTATATCTAAAGGAGTGAAGCCATTTGTCACACTCTTTCACTGG 559
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 477 AACTTGATTAATCAACTTCTGTCTAAAGGAGTGAAGCCATTTGTCACACTCTTTCACTGG 536
Query 560 GACTTACCAGATGCACTCGAAAATGCTTACGGTGGCCTCCTTGGAGATGAATTTGTGAAC 619
||||||||||| ||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 537 GACTTACCAGAGGCACTCGAAGATGCTTACGGTGGCTTCCTTGGAGATGAAATTGTGAAT 596
Query 620 GATTTCCGAGACTATGCAGAACTTTGTTTCCAGAAGTTTGGAGATAGAGTGAAGCAGTGG 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GATTTCCGAGACTATGCAGAACTTTGTTTCCAGAAGTTTGGAGATAGAGTGAAGCAGTGG 656
Query 680 ACGACACTAAACGAGCCATATACAATGGTACATGAAGGTTATATAACAGGTCAAAAGGCA 739
|| |||||||||||||||| |||| | |||||||||||||||||||||||||||||||||
Sbjct 657 ACAACACTAAACGAGCCATTTACAGTAGTACATGAAGGTTATATAACAGGTCAAAAGGCA 716
Query 740 CCTGGAAGATGTTCCAATTTCTA-TAAACCTGATTGCTTAGGTGGCGATGCAGCCACGGA 798
||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| ||
Sbjct 717 CCTGGAAGATGTTCCAATTTC-ACTAATCCTGATTGCTTAGGTGGCGATGCAGCCACCGA 775
Query 799 GCCTTACATCGTCGGCCATAACCTCCTCCTTGCTCATGGAGTTGCCGTAAAAGTATATAG 858
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 776 GCCTTACATCGTCGGCCATAACCTCCTCCTTGCTCATGGAGTTGCCGTCAAAGTCTACAG 835
Query 859 AGAAAAGTACCAGGCAACTCAGAAA-GGTGAAATTGGTATTGCCTTAAACACAGCATGGC 917
||||||||||||||||||||| ||| |||||||||||||| ||||||||||||| |||||
Sbjct 836 AGAAAAGTACCAGGCAACTCA-AAATGGTGAAATTGGTATCGCCTTAAACACAGTATGGC 894
Query 918 ACTACCCTTATTCAGATTCATATGCTGACCGGTTAGCTGC-GACTCGAGCGACTGCCTTC 976
|||||||||||||||| ||||||||||||||||||||||| | ||||||| || ||||||
Sbjct 895 ACTACCCTTATTCAGAGTCATATGCTGACCGGTTAGCTGCTG-CTCGAGCCACGGCCTTC 953
Query 977 ACCTTCGACTACTTCATGGAGCCAATCGTGTACGGTAGATATCCAATTGAAATGGTCAGC 1036
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 954 ACCTTTGACTACTTCATGGAGCCAATCGTCTACGGTAGATATCCAATTGAAATGGTCAGC 1013
Query 1037 CACGTTAAA-GACGGTCGTCTTCCTACCTTCACACCAGAAGAGTCCGAAATGCTCAAAGG 1095
|||| |||| || |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1014 CACG-TAAAGGATGGTCGTCTTCCTACATTCACGCCAGAAGAGTCCGAAATGCTCAAAGG 1072
Query 1096 ATCATATGATTTCATAGGCGTTAACTATTACTCATCTCTTTACGCAAAAGACG-TGCCGT 1154
|||||| ||||||||||| | ||||||||||||||| |||| |||||||||| | ||||
Sbjct 1073 ATCATACGATTTCATAGGTATAAACTATTACTCATCTTTTTATGCAAAAGACGCT-CCGT 1131
Query 1155 GTGCAACTGAAAACATCACCATGACCACCGATTCTTGCGTCAGCCTCGTAGGTGAACGAA 1214
| ||||||||||||||||||||| |||||||||| ||||||||| |||||||||| ||||
Sbjct 1132 GCGCAACTGAAAACATCACCATGTCCACCGATTCGTGCGTCAGCATCGTAGGTGAGCGAA 1191
Query 1215 ATGGAGTGCCTATCGGTCCAGCGGCTGGATCGGATTGGCTTTTGATATATCCCAAGGGTA 1274
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 1192 ATGGAGTGCCTATCGGTCCAACGGCTGGATCGGATTGGCTTTTGATTTATCCCAAGGGTA 1251
Query 1275 TTCGTGATCTCCTACTACATGCAAAATTCAGATACAATGATCCCGTCTTGTACATTACAG 1334
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1252 TTCGTGATCTCCTATTACATGCAAAATTCAGATACAATGATCCTGTCTTGTACATAACAG 1311
Query 1335 AGAATGGAGTGGATGAAGCAAATATTGGCAAAATATTTCTTAACGACGATTTGAGAATTG 1394
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 AAAATGGAGTGGATGAAGCAAATATTGGCAAAATATTTCTTAACGACGATTTGAGAATTG 1371
Query 1395 ATTACTATGCTCATCACCTCAAGATGGTTAGCGATGCTATCTCGATCGGGGTGAATGTGA 1454
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1372 ATTACTATGCTCATCACCTTAAGATGGTTAGCGATGCTATCTCGATCGGGGTGAAAGTGA 1431
Query 1455 AGGGATATTTCGCGTGGTCATTGATGGATAATTTCGAGTGGTCGGAAGGATACACGGTCC 1514
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1432 AGGGATATTTCGCGTGGTCATTGATGGATAATTTCGAATGGTCGGAAGGATACACGGTCC 1491
Query 1515 GGTTCGGGCTAGTGTTTGTGGACTTTGAAGATGGACGTAAGAGGTATCTGAAGAAATCAG 1574
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 GGTTCGGACTAGTGTTTGTGGACTTTGAAGATGGACGTAAGAGGTATCTGAAGAAATCAG 1551
Query 1575 CTAAGTGGTTTAGGA-GATTGTTGAAGGGAGCGCATGGTGGGACGAATGAGCAGGTGGCT 1633
| ||||||||||||| | || |||||||||| |||| |||||||||| |||||||||||
Sbjct 1552 CGAAGTGGTTTAGGAAG-TTATTGAAGGGAGAGCATAATGGGACGAATCAGCAGGTGGCT 1610
Query 1634 GTTATTTAATAAACCACGAGTCATTGGTC-AATTTA--GTCTACTGTTTCTTTT 1684
||||||||||||| ||||| |||||||| ||||| || |||||||||||||
Sbjct 1611 GTTATTTAATAAATCACGAATCATTGGTTTAATTTGTTGTGTACTGTTTCTTTT 1664
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68790982470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5