BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G60130.1 Length=1832 Score E Sequences producing significant alignments: (Bits) Value Ahg486479 jgi|Araly1|486479|fgenesh2_kg.5__2471__AT3G60130.1 2510 0.0 > Ahg486479 jgi|Araly1|486479|fgenesh2_kg.5__2471__AT3G60130.1 Length=1682 Score = 2510 bits (1359), Expect = 0.0 Identities = 1573/1674 (94%), Gaps = 23/1674 (1%) Strand=Plus/Plus Query 24 TTTTTCACAACCAAATTTCCATTATAAATCaaaaaataaaaaCTT-AATTAG-TTTTTAC 81 |||||||||||||||||| |||| |||||| ||||||||||| || |||||| ||||||| Sbjct 1 TTTTTCACAACCAAATTT-CATTGTAAATC-AAAAATAAAAA-TTGAATTAGTTTTTTAC 57 Query 82 AGAAG-AAAAGAAAACAATGAGAGGTAAATTTCTAAGTTTACTGTTGCTCATTACTTTGG 140 ||||| |||| |||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 58 AGAAGAAAAAAAAAAGAATGAGAAGTAAATTTCTAAGTTTACTGTTGCTCATTACTTTGG 117 Query 141 CCTGCATTGGAGTTTCCGCCAAGAAGCATTCCACAAGGCCTAGATTAAGAAGAAATGA-T 199 |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| | Sbjct 118 CCTGCATTGGAGTTTCCGCCAAGAAGCATTCCTCAAGGCCTAGATTGAGAAGAAATGACT 177 Query 200 TTCCCACAAGATTTCGTTTTTGGATCTGCTACTTCTGCTTATCAGTGTGAAGGAGCTGCA 259 || ||| |||||||| ||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 178 TT-CCAGAAGATTTCATTTTTGGATCTGCAACTTCTGCTTATCAGTGTGAAGGTGCTGCT 236 Query 260 CATGAAGATGGTAGAGGTCCAAGTATCTGGGACTCCTTCTCTGAAAAATTCCCAGAAAAG 319 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 237 CATGAAGATGGTAGAGGTCCAAGTATCTGGGACTCTTTCTCTGAAAATTTCCCAGAAAAG 296 Query 320 ATAATGGATGGTAGTAATGGGTCCATTGCAGATGATTCTTACAATCTTTACAAGGAAGAT 379 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 297 ATAATGGATGGTAGTAATGGGTCCATTGCAGATGATTCTTACAACCTTTACAAGGAAGAT 356 Query 380 GTGAATTTGCTGCATCAAATTGGCTTCGATGCTTACCGATTTTCGATCTCATGGTCACGG 439 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| Sbjct 357 GTGAATTTGCTGCATCAAATTGGCTTTGATGCTTACCGATTCTCGATCTCATGGTCCCGG 416 Query 440 ATTTTGCCTCGTGGGACTCTAAAGGGAGGAATCAACCAGGCTGGAATTGAATATTATAAC 499 |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||| Sbjct 417 ATTTTGCCTCGTGGGACTATAAAGGGAGGAATCAACCAGGCTGGAATTGACTATTACAAC 476 Query 500 AACTTGATTAATCAACTTATATCTAAAGGAGTGAAGCCATTTGTCACACTCTTTCACTGG 559 |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 477 AACTTGATTAATCAACTTCTGTCTAAAGGAGTGAAGCCATTTGTCACACTCTTTCACTGG 536 Query 560 GACTTACCAGATGCACTCGAAAATGCTTACGGTGGCCTCCTTGGAGATGAATTTGTGAAC 619 ||||||||||| ||||||||| |||||||||||||| |||||||||||||| ||||||| Sbjct 537 GACTTACCAGAGGCACTCGAAGATGCTTACGGTGGCTTCCTTGGAGATGAAATTGTGAAT 596 Query 620 GATTTCCGAGACTATGCAGAACTTTGTTTCCAGAAGTTTGGAGATAGAGTGAAGCAGTGG 679 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 597 GATTTCCGAGACTATGCAGAACTTTGTTTCCAGAAGTTTGGAGATAGAGTGAAGCAGTGG 656 Query 680 ACGACACTAAACGAGCCATATACAATGGTACATGAAGGTTATATAACAGGTCAAAAGGCA 739 || |||||||||||||||| |||| | ||||||||||||||||||||||||||||||||| Sbjct 657 ACAACACTAAACGAGCCATTTACAGTAGTACATGAAGGTTATATAACAGGTCAAAAGGCA 716 Query 740 CCTGGAAGATGTTCCAATTTCTA-TAAACCTGATTGCTTAGGTGGCGATGCAGCCACGGA 798 ||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| || Sbjct 717 CCTGGAAGATGTTCCAATTTC-ACTAATCCTGATTGCTTAGGTGGCGATGCAGCCACCGA 775 Query 799 GCCTTACATCGTCGGCCATAACCTCCTCCTTGCTCATGGAGTTGCCGTAAAAGTATATAG 858 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || Sbjct 776 GCCTTACATCGTCGGCCATAACCTCCTCCTTGCTCATGGAGTTGCCGTCAAAGTCTACAG 835 Query 859 AGAAAAGTACCAGGCAACTCAGAAA-GGTGAAATTGGTATTGCCTTAAACACAGCATGGC 917 ||||||||||||||||||||| ||| |||||||||||||| ||||||||||||| ||||| Sbjct 836 AGAAAAGTACCAGGCAACTCA-AAATGGTGAAATTGGTATCGCCTTAAACACAGTATGGC 894 Query 918 ACTACCCTTATTCAGATTCATATGCTGACCGGTTAGCTGC-GACTCGAGCGACTGCCTTC 976 |||||||||||||||| ||||||||||||||||||||||| | ||||||| || |||||| Sbjct 895 ACTACCCTTATTCAGAGTCATATGCTGACCGGTTAGCTGCTG-CTCGAGCCACGGCCTTC 953 Query 977 ACCTTCGACTACTTCATGGAGCCAATCGTGTACGGTAGATATCCAATTGAAATGGTCAGC 1036 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 954 ACCTTTGACTACTTCATGGAGCCAATCGTCTACGGTAGATATCCAATTGAAATGGTCAGC 1013 Query 1037 CACGTTAAA-GACGGTCGTCTTCCTACCTTCACACCAGAAGAGTCCGAAATGCTCAAAGG 1095 |||| |||| || |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 1014 CACG-TAAAGGATGGTCGTCTTCCTACATTCACGCCAGAAGAGTCCGAAATGCTCAAAGG 1072 Query 1096 ATCATATGATTTCATAGGCGTTAACTATTACTCATCTCTTTACGCAAAAGACG-TGCCGT 1154 |||||| ||||||||||| | ||||||||||||||| |||| |||||||||| | |||| Sbjct 1073 ATCATACGATTTCATAGGTATAAACTATTACTCATCTTTTTATGCAAAAGACGCT-CCGT 1131 Query 1155 GTGCAACTGAAAACATCACCATGACCACCGATTCTTGCGTCAGCCTCGTAGGTGAACGAA 1214 | ||||||||||||||||||||| |||||||||| ||||||||| |||||||||| |||| Sbjct 1132 GCGCAACTGAAAACATCACCATGTCCACCGATTCGTGCGTCAGCATCGTAGGTGAGCGAA 1191 Query 1215 ATGGAGTGCCTATCGGTCCAGCGGCTGGATCGGATTGGCTTTTGATATATCCCAAGGGTA 1274 |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 1192 ATGGAGTGCCTATCGGTCCAACGGCTGGATCGGATTGGCTTTTGATTTATCCCAAGGGTA 1251 Query 1275 TTCGTGATCTCCTACTACATGCAAAATTCAGATACAATGATCCCGTCTTGTACATTACAG 1334 |||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 1252 TTCGTGATCTCCTATTACATGCAAAATTCAGATACAATGATCCTGTCTTGTACATAACAG 1311 Query 1335 AGAATGGAGTGGATGAAGCAAATATTGGCAAAATATTTCTTAACGACGATTTGAGAATTG 1394 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1312 AAAATGGAGTGGATGAAGCAAATATTGGCAAAATATTTCTTAACGACGATTTGAGAATTG 1371 Query 1395 ATTACTATGCTCATCACCTCAAGATGGTTAGCGATGCTATCTCGATCGGGGTGAATGTGA 1454 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 1372 ATTACTATGCTCATCACCTTAAGATGGTTAGCGATGCTATCTCGATCGGGGTGAAAGTGA 1431 Query 1455 AGGGATATTTCGCGTGGTCATTGATGGATAATTTCGAGTGGTCGGAAGGATACACGGTCC 1514 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1432 AGGGATATTTCGCGTGGTCATTGATGGATAATTTCGAATGGTCGGAAGGATACACGGTCC 1491 Query 1515 GGTTCGGGCTAGTGTTTGTGGACTTTGAAGATGGACGTAAGAGGTATCTGAAGAAATCAG 1574 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1492 GGTTCGGACTAGTGTTTGTGGACTTTGAAGATGGACGTAAGAGGTATCTGAAGAAATCAG 1551 Query 1575 CTAAGTGGTTTAGGA-GATTGTTGAAGGGAGCGCATGGTGGGACGAATGAGCAGGTGGCT 1633 | ||||||||||||| | || |||||||||| |||| |||||||||| ||||||||||| Sbjct 1552 CGAAGTGGTTTAGGAAG-TTATTGAAGGGAGAGCATAATGGGACGAATCAGCAGGTGGCT 1610 Query 1634 GTTATTTAATAAACCACGAGTCATTGGTC-AATTTA--GTCTACTGTTTCTTTT 1684 ||||||||||||| ||||| |||||||| ||||| || ||||||||||||| Sbjct 1611 GTTATTTAATAAATCACGAATCATTGGTTTAATTTGTTGTGTACTGTTTCTTTT 1664 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68790982470 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5