BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60140.1
Length=1929
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486481 jgi|Araly1|486481|fgenesh2_kg.5__2473__AT3G60140.1 2667 0.0
Ahg935381 jgi|Araly1|935381|scaffold_403369.1 992 0.0
Ahg483572 jgi|Araly1|483572|fgenesh2_kg.4__2632__AT2G44470.3 966 0.0
> Ahg486481 jgi|Araly1|486481|fgenesh2_kg.5__2473__AT3G60140.1
Length=1820
Score = 2667 bits (1444), Expect = 0.0
Identities = 1711/1837 (93%), Gaps = 30/1837 (2%)
Strand=Plus/Plus
Query 1 TCATCACTTTGAAATCTcaaaagacaccaagc-aaaaaaacaaagacagacaaaaaaaaa 59
|||||||||||||||| | ||| ||||||||| |||||||||||| | | | | |||||
Sbjct 1 TCATCACTTTGAAATC-CCAAA-ACACCAAGCAAAAAAAACAAAG-C-G--AGACAAAAA 54
Query 60 agagagagagagagagagaaaaaTGGCTAAGGGATCGTGGTTCTTCATTATCCTTTTTAT 119
| | | | ||||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 55 A-A-A-A-AGAGAGAGA-AAAAATGGCTAGGGGATCGTGGTTCTTCATTATCCTTTCGAT 109
Query 120 CATCTCAATGTTAGAAAATATGATCAATTC-TCTAGAATTAGATCGGCATAGTTTTCCTG 178
||||||| |||| | ||||||||||||||| | || || |||||||||||||||||||||
Sbjct 110 CATCTCATTGTTGGCAAATATGATCAATTCTTTTA-AACTAGATCGGCATAGTTTTCCTG 168
Query 179 ATGATTTCATCTTTGGGACAGCTGCCTCGGCGTTTCAGTACGAAGGTGCAACAAGTGAAG 238
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 169 ATGATTTCATCTTTGGAACAGCTGCCTCGGCGTTTCAGTACGAAGGTGCAACAAATGAAG 228
Query 239 GTGGCAAGTCTCCAACTATATGGGATCACTTCAGCCTCACGTATCCAGAAAGGACCAAAA 298
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 229 GTGGCAAGTCTCCAACTATATGGGATCACTTCAGCCGCACGTATCCAGAAAGGACCAAAA 288
Query 299 TGCATAATGCAGATGTAGCAATTGATTTTTATCATCGTTACAAGGATGACATAAAATTGA 358
|||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct 289 TGCATAATGCTGATGTAGCAATTGATTTTTACCATCGTTACAAGGATGATATTAAATTGA 348
Query 359 TGAAGGAGCTAAACATGGACGCTTTCCGATTTTCAATCTCGTGGTCAAGATTAATACCCA 418
||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| ||||
Sbjct 349 TGAAGGAACTAAACATGGACGCTTTCCGATTCTCAATCTCGTGGTCCCGATTAATTCCCA 408
Query 419 GTGGAAAGCTAAAGGATGGAGTAAACAAAGAAGGTGTACAATTCTACAAGGATCTCATAG 478
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 409 GTGGAAAGCTAAAGGATGGAGTAAACAAAGAAGGTGTAAAATTTTACAAGGATCTCATAG 468
Query 479 ACGAACTTCTTGCTAATGACATACAACCTTCGATGACGCTCTATCATTGGGACCACCCAC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 ACGAACTTCTTGCTAATGACATACAACCTTCGATGACGCTCTATCATTGGGACCACCCAC 528
Query 539 AATCTTTGGAGGACGAATATGGTGGCTTTCTAAGCCCTAAAATCGTAGAAGATTTTCGAG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 AATCTTTGGAGGACGAATATGGTGGCTTTCTAAGCCCTAAAATCGTAGAAGATTTTCGAG 588
Query 599 ATTTTGCAAGAATTTGTTTTGAAGAGTTTGGAGATAAAGTTAAGATGTGGACAACAATCA 658
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 589 ACTTTGCAAGAATTTGTTTTGAAGAGTTTGGAGATAAAGTTAAGATGTGGACAACTATCA 648
Query 659 ACGAACCTTATATAATGACTGTTGCGGGTTATGATCAAGGTAACAAGGCGGCTGGACGAT 718
|||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 649 ACGAACCTTACATTATGACTGTTGCGGGTTATGATCAAGGTAACAAGGCGGCTGGAAGAT 708
Query 719 GCTCAAAATGGGTAAACGAAAAGTGTCAGGCTGGAGATTCGAGTACCGAGCCTTACATTG 778
|||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 709 GCTCGAAATGGGTAAATGAAAAGTGTCAGGCTGGCGATTCGAGTACTGAGCCTTACATTG 768
Query 779 TTTCACATCACACTCTTCTTGCCCATGCCGCTGCAGTGGAAGAATTTCGAAAATGTGAAA 838
||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 769 TTTCACACCACACTCTTCTTGCCCATGCCGCTGCAGTAGAAGAATTCCGAAAATGCAAAA 828
Query 839 AAACTTCGCATGATGGCCAAATTGGGATAGTACTATCACCAAGATGGTTCGAGCCTTATC 898
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 829 AAACTTCGCATGATGGCCAAATTGGGATAGTACTGTCACCAAGATGGTTCGAGCCTTACC 888
Query 899 ATTCCGATTCAACTGACGATAAAGAAGCAGCTGAACGAGCTC-TTGCCTTTGAAATTGGA 957
|||| || ||||||||||||||||||||||||||| |||| | |||||||||||||||||
Sbjct 889 ATTCAGACTCAACTGACGATAAAGAAGCAGCTGAAGGAGC-CATTGCCTTTGAAATTGGA 947
Query 958 TGGCATCTTGATCCAGTCATTCACGGAGATTATCCAGAGATTGTAAAAAAGTACGCGGGA 1017
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 948 TGGCATCTTGATCCGGTCATTCACGGAGATTATCCAGAGATTGTAAAAAAGTATGCGGGA 1007
Query 1018 AATAAATTACCTTCATTTACTGTTGAACAATCAAAGATGTTACAAAATTCATCAGATTTC 1077
|||||||||||||| ||||||| ||| | |||||||||||| ||||||||||||||||
Sbjct 1008 AATAAATTACCTTCGTTTACTGCAGAAGAGTCAAAGATGTTAAAAAATTCATCAGATTTT 1067
Query 1078 GTTGGAATTAATTACTACACGGCTCGCTTCGCTGCTCATCTTCCTCACATAGACCCTGAA 1137
|| || || |||||||| ||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1068 GTCGGCATAAATTACTATACGGCGCGCTTCGCTGCTCATCTTCATCACATAGACCCTGAA 1127
Query 1138 AAACCTCGTTTCAAAACTGACCACCATGTGGAATGGAAACTGACTAATCACAGTGGTCAC 1197
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 AAACCTCGGTTCAAGACTGACCACCATGTGGAATGGAAACTGACTAATCACAGTGGTCAC 1187
Query 1198 ATCATCGGACCTGGGGAAGAAAGGGGCTTCTTATTTTCACACCCGGAAGGCTTACGAAAA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1188 ATCATCGGACCTGGGGAAGAAAGGGGCTTCTTATTTTCACACCCGGAAGGCCTACGAAAA 1247
Query 1258 GTTCTTAACTATATTAAAGAGAGATACAATAACATGCCAGTCTACATCAAAGAAAATGGA 1317
||||| |||||||| ||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1248 GTTCTAAACTATATCAAAGACAAATACAATAACATGCCAGTCTACATCAAAGAAAATGGA 1307
Query 1318 ATTAATGACAACGACGACGGTACAAAACCAAGAGAAGAAATTGTGAAGGACACATTTAGG 1377
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1308 ATTAATGACAACGACGACGGTACAAAACCAAGAGAAGAGATTGTTAAGGACACATTTAGG 1367
Query 1378 ATTGAATACCATAAGACACATTTCGAAGAACTTCACAAAGCTATAGTGGAAGATGGGTGT 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 ATTGAATACCATAAGACACATTTCGAAGAACTTCACAAAGCTATAGTGGAAGATGGGTGT 1427
Query 1438 GACGTAAGAGGATATTACGCATGGTCATTGATGGACAATTTTGAATGGGAGCATGGATAC 1497
||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1428 GACGTGAGAGGATACTACGCATGGTCATTGATGGACAATTTTGAATGGGAACATGGATAC 1487
Query 1498 ACTGCAAGATTTGGTCTATACTATGTTGATTTTGTCAATGGTCTCAAACGTTATCCAAAA 1557
||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1488 ACTGCTAGATTTGGTCTGTACTATGTTGACTTTGTCAATGGTCTCAAACGTTATCCAAAA 1547
Query 1558 GATTCGGTCAAATGGTTTAAGCGGTTCCTTAAGAAATCGGTCGTCGGAGAGAGTAACAAA 1617
|||||||||||||||||||||||||||||||||| |||||||| | ||||| |||| ||
Sbjct 1548 GATTCGGTCAAATGGTTTAAGCGGTTCCTTAAGAGATCGGTCG--G-AGAGACTAACGAA 1604
Query 1618 GAGGAGGTAGAG-GAGATGTCACGCGCGGAAGGGAATAAGACTTT-TAAG-------G-G 1667
|||||||| || |||| |||||| || || |||||||||||||| || | | |
Sbjct 1605 GAGGAGGT-GAATGAGAAGTCACGTGCCGAGGGGAATAAGACTTTATACGAACAAAAGTG 1663
Query 1668 TTTCGAAGAATCGGCGGGTTTCTTTGCATCTTTCATGGCAATGAACCAATCGAGGAGAGA 1727
||| |||||||||||||||||||||| |||||||||||||| |||||| |||||||||||
Sbjct 1664 TTTTGAAGAATCGGCGGGTTTCTTTGTATCTTTCATGGCAACGAACCAGTCGAGGAGAGA 1723
Query 1728 TGAGGAGAATAATCGTTGCTCCTTTGATTTTCCTCATACTCATTTTGGTGTTTTGCAAGG 1787
|||||||| ||||||||||| ||||||||||||| || |||||||||||||||||||||
Sbjct 1724 GGAGGAGAAGAATCGTTGCTCGTTTGATTTTCCTCGTAATCATTTTGGTGTTTTGCAAGG 1783
Query 1788 CATAGAGAACCCATCTTCATTTTATTGATTTCAAATC 1824
|||||||||||||| |||||||||| |||| |||||
Sbjct 1784 AATAGAGAACCCATCGTCATTTTATTAATTTGAAATC 1820
> Ahg935381 jgi|Araly1|935381|scaffold_403369.1
Length=1780
Score = 992 bits (537), Expect = 0.0
Identities = 1160/1455 (80%), Gaps = 65/1455 (4%)
Strand=Plus/Plus
Query 160 GATCGGCATAGTTTTCCTGATGATTTCATCTTTGGGACAGCTGCCTCGGCGTTTCAGTAC 219
||||| ||| ||||||| ||| |||| | ||||| |||||||| ||||| |||||||||
Sbjct 108 GATCGTCATGGTTTTCCCGATAATTTTGTTTTTGGAACAGCTGCATCGGCTTTTCAGTAC 167
Query 220 GAAGGTGCAACAAGTGAAGGTGGCAAGTCTCCAACTATATGGGATCACTTCAGCCTCACG 279
||||||||||||||||||||||| || |||||| ||||||||||| ||||||||| |||
Sbjct 168 GAAGGTGCAACAAGTGAAGGTGGGAAATCTCCAGCTATATGGGATTACTTCAGCCACACT 227
Query 280 TATCCAGAAAGGACCAAAATGCATAATGCAGATGTAGCAATTGATTTTTATCATCGTTAC 339
| |||||| || |||| ||||| |||||||||||||| | || ||||| ||||||||
Sbjct 228 TTTCCAGAGAGAACCAGGATGCAGAATGCAGATGTAGCGGTCGACTTTTACCATCGTTAT 287
Query 340 AAGGATGACATAAAATTGATGAAGGAGCTAAACATGGACGCTTTCCGATTTTCAATCTCG 399
||||||||||| || |||||||| || ||||| |||||||||||| ||||||| || |||
Sbjct 288 AAGGATGACATCAAGTTGATGAAAGACCTAAATATGGACGCTTTCAGATTTTCGATTTCG 347
Query 400 TGGTCAAGATTAATACCCAGTGGAAA-GCTAAAGGATGGAGTAAACAAAGAAGGTGTACA 458
||| | |||||||||||||||||||| | ||||||||||||| ||| |||||||||||||
Sbjct 348 TGGGCGAGATTAATACCCAGTGGAAAAG-TAAAGGATGGAGTTAACCAAGAAGGTGTACA 406
Query 459 ATTCTACAAGGATCTCATAGACGAACTTC-TTGCTAATGACATACAACCTTCGATGACGC 517
|||||| |||| |||||| ||||| || | |||| |||| ||| ||||| |||||||| |
Sbjct 407 ATTCTATAAGGCTCTCATCGACGAGCT-CGTTGCGAATGGCATTCAACCATCGATGACCC 465
Query 518 TCTATCATTGGGACCACCCACAATCT-TTGGAGGACGAATATGGTGGCTTTCTAAGCCCT 576
|||| ||||||||||| || ||| | ||| ||||||| |||||||| ||| |||||||
Sbjct 466 TCTACCATTGGGACCATCCTCAAGCACTTG-AGGACGAGTATGGTGGGTTTTTAAGCCCC 524
Query 577 AAAATCGTAGAAGATTTTCGAGATTTTGCAAGAATTTGTTTTGAAGAGTTTGGAGATAAA 636
|||| ||||||||||||||||||||| ||||| | ||||||||||| || ||||| |||
Sbjct 525 CAAATAGTAGAAGATTTTCGAGATTTTTCAAGAGTATGTTTTGAAGAATTCGGAGACAAA 584
Query 637 GTTAAGATGTGGACAACAATCAACGAACCTTATATAATGACTGTTGCGGGTTATGATCAA 696
||||| |||||||| ||||| ||||| |||||| | || ||||||||||| || ||| |
Sbjct 585 GTTAAAATGTGGACTACAATAAACGAGCCTTATGTCATAACTGTTGCGGGCTACGAT-AC 643
Query 697 GGTAA-CAAGGCGGCTGG-ACGATGCTCAAAATGGGT-AA-ACGAAAAGTGTCA-GGCTG 751
|| || ||| |||| ||| ||||||||| |||||||| || | | || |||||| ||| |
Sbjct 644 GGGAAACAAAGCGG-TGGGACGATGCTCGAAATGGGTGAATA-GTAA-GTGTCAAGGC-G 699
Query 752 GAGATTCGAG-TACCGAGCCTTACATTGTTTCACATCACACT-CTTCTTGCCCATGCCGC 809
| ||||| || ||||||||| ||||||| ||||||||| || |||||||| ||||||||
Sbjct 700 GCGATTC-AGGTACCGAGCCCTACATTGCATCACATCAC-CTTCTTCTTGCTCATGCCGC 757
Query 810 TGCAGTGGAAGAATTTCGAAAATGTGAAAAA-ACTTCGCATGATGGCCAAATTGGGATAG 868
|| || |||| || ||||||||| || || ||| | | || || |||||||||||||
Sbjct 758 AGCTGTACAAGAGTTCCGAAAATGT-AACAAGACT-CA-A-GACGGTCAAATTGGGATAG 813
Query 869 TACTATCACCAA-GATGGTTCGAGCCTTATC-ATTCCGATTCAACTGACGATAAAGAAGC 926
| |||| || | ||||| |||||||| | | || | ||| || |||||| |||||
Sbjct 814 TGTTATCTCCTTTG-TGGTTTGAGCCTTA-CGACTCTGCTTCTCCTTCCGATAACGAAGC 871
Query 927 AGCTGAACGAGCTCTTGCCTTTGAAATTGGAT-GGCATCTT-GATCCAGTCATTCACGGA 984
| | |||||||||||||| |||| | | || ||||| || |||||||| |||||||||
Sbjct 872 TGTTAAACGAGCTCTTGCCACTGAACTAG-ATTGGCAT-TTAGATCCAGTTATTCACGGA 929
Query 985 GATTATCCAGAGATTG-TAAA-AAAGTACGCGGGAAATAAATTACCTTCATTT-ACTGTT 1041
||||||||||| || | | || ||| | ||| ||||||| ||||||||| ||| |||
Sbjct 930 GATTATCCAGAAAT-GATGAAGAAACT-CGCCGGAAATAGATTACCTTC-TTTCACTCCA 986
Query 1042 GAACAATC-AAAGATGTT-ACAAAATTCATCAGATTTCGTTGGAATTAATTACTACACGG 1099
|||||||| ||| ||||| | |||||||||| |||||| ||||||| || ||||| ||
Sbjct 987 GAACAATCCAAA-ATGTTGA-AAAATTCATCCGATTTCATTGGAATAAACTACTATACAA 1044
Query 1100 CTCGCTT-CGCTGCTCATCTTCCTCACATAGACCCTGAAAAACCTCG-TTTCAAAACTGA 1157
| || || || ||||||| |||| ||| | ||||||| || || ||| || | ||
Sbjct 1045 CGCG-TTACGTTGCTCATATTCCACACCTCGACCCTGCTCGTCCACGATTTGTAACC-GA 1102
Query 1158 CCACCATG-TGGAATGGAAACTGACTAATCACAGTGGTCAC-ATCATCGGACCTGGGGAA 1215
|| || | | |||||| | | || ||||||||| |||| | |||||||| ||||||
Sbjct 1103 TCATCA-GCTCCAATGGAGAGTAACAAATCACAGTAATCACCAA-ATCGGACCAGGGGAA 1160
Query 1216 GAAAGGGGCTT-CTT-ATTTTCACACCCGGAAGGCTTACGAAAAGTTCTTAACTATATTA 1273
|| | ||| | || | | |||| || ||||| |||||||||||||||||||| || |
Sbjct 1161 GATCGAGGCATACTCCAAT--CACATCCAGAAGGTTTACGAAAAGTTCTTAACTACATCA 1218
Query 1274 AAGAGAGATACAATAACA-TGCCAGTCTACATCAAAGAAAATGGAATTAATGACAACGAC 1332
|||| | |||||||||| | ||| || || ||||| || ||||| |||||| |||||
Sbjct 1219 AAGATAAATACAATAACCCTAT-AGTTTATATAAAAGAGAACGGAATCAATGACTACGAC 1277
Query 1333 GACGGTACAAAACCAAGAGAAGAAATTGTGAAGGACACATTTAGGATT-GAATACCATAA 1391
|| ||||||||| || |||| || ||| | || || ||||||||||| | |||||| |
Sbjct 1278 GATGGTACAAAATCACGAGAGGATATTCTCAATGATACATTTAGGATAAGC-TACCATGA 1336
Query 1392 G-ACACATTTCGAAGAACTTCACAAAGCTATAGTGGAAGATGGGTGTGACGTAAGAGGAT 1450
| || ||| || || |||| || ||||||||| | || ||||| |||||||| |||||||
Sbjct 1337 GGAC-CATCTCCAACAACTCCAAAAAGCTATAATAGAGGATGGATGTGACGTCAGAGGAT 1395
Query 1451 ATTACGCATGGTCATTGA-TGGACAATTTTGAATGGGAGCATGGATACACTGCAAGATTT 1509
|||||| ||||| || | | |||||||| || ||||| |||||||| || | ||||||
Sbjct 1396 ATTACGTGTGGTCTTT-ACTAGACAATTTCGAGTGGGAACATGGATATTCTACTAGATTT 1454
Query 1510 GGTCTATACTATGTTGATTTTGTCAATGGTCTCAAACGTTAT-CCAAAAGATTCGGTCAA 1568
||||| ||||||||||| | | ||| | ||||| ||| || || |||||||| || ||
Sbjct 1455 GGTCTGTACTATGTTGACTACGACAACGATCTCACTCGT-ATTCCCAAAGATTCTGTTAA 1513
Query 1569 ATGGTTTAAGCGGTT 1583
||||| |||| |||
Sbjct 1514 CTGGTTCAAGCAGTT 1528
> Ahg483572 jgi|Araly1|483572|fgenesh2_kg.4__2632__AT2G44470.3
Length=1959
Score = 966 bits (523), Expect = 0.0
Identities = 1146/1442 (79%), Gaps = 62/1442 (4%)
Strand=Plus/Plus
Query 168 TAGTTTTCCTGATGATTTCATCTTT-GGGACAGCTGCCTCGGCGTTTCAGTA-CGAAGGT 225
|||||||||||| |||||| | ||| || || ||| ||||| |||||| | |||||||
Sbjct 148 TAGTTTTCCTGAAGATTTCGT-TTTCGGAACCGCTATATCGGCCTTTCAG-AGCGAAGGT 205
Query 226 GCAACAAGTGAAGGTGGCAAGTCTCCAACTATATGGGATCACTTCAGCCTCACGTATCCA 285
|||||||| |||||||| || || |||||||| |||||| ||||||||| ||| | ||||
Sbjct 206 GCAACAAGCGAAGGTGGAAAATCGCCAACTATTTGGGATTACTTCAGCCACACCTTTCCA 265
Query 286 GAAAGGACCAAAATGCATAATGCAGATGTAGCAATTGATTTTTATCATCGTTACAAGGAT 345
||||| ||||| ||||| |||| ||| || || | |||||||| |||||||||||||||
Sbjct 266 GAAAGAACCAATATGCAGAATGGAGACGTTGCCACCGATTTTTACCATCGTTACAAGGAT 325
Query 346 GACATAAAATTGATGAAGGAGCTAAACATGGACGCTTTCCGATTTTCAATCTCGTGGTCA 405
||||| ||||||||||| ||| |||| |||||||||||| ||||||| || |||||| |
Sbjct 326 GACATCAAATTGATGAAAGAGTTAAATATGGACGCTTTCAGATTTTCGATTTCGTGGGCC 385
Query 406 AGATTAATACCCAGTGGAAAGCTAAAGGATGGAGTAAACAAAGAAGGTGTACAATTCTAC 465
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 386 AGATTAATACCCAGTGGAAAGGTAAAGGATGGAGTAAACAAAGAAGGTGTACAATTCTAC 445
Query 466 AAGGATCTCATAGACGAACTTCTTGCTAATGACATACAACCTTCGATGACGCTCTATCAT 525
|||| |||||||||||| ||| ||||||||| || ||||||||| |||| |||||||||
Sbjct 446 AAGGCTCTCATAGACGAGCTTATTGCTAATGGTATTCAACCTTCGGTGACTCTCTATCAT 505
Query 526 TGGGACCACCCACAATCT-TTGGAGGACGAATATGGTGGCTTTCTAAGCCCTAAAATCGT 584
|||||||| || ||| | ||| ||||||| |||||||| ||| ||||||| |||| |
Sbjct 506 TGGGACCATCCTCAAGCACTTG-AGGACGAGTATGGTGGTTTTTTAAGCCCCCAAATAAT 564
Query 585 AGAAGATTTTCGAGATTTTGCAAGAATTTGTTTTGAAGAGTTT-GGAGATAAAGTTAAGA 643
||||||||||||| |||| |||||| | ||||||||| | ||| ||||| ||||||||||
Sbjct 565 AGAAGATTTTCGAAATTTCGCAAGAGTCTGTTTTGAAAA-TTTCGGAGACAAAGTTAAGA 623
Query 644 TGTGGACAACAATCAACGAACCTTATATAATGACTGTTGCGGGTTATGATCA-AGGTAAC 702
|||||||||| |||||||| |||||| | || | ||||||||| ||||| || ||| |||
Sbjct 624 TGTGGACAACTATCAACGAGCCTTATGTTATAAGTGTTGCGGGCTATGA-CACAGGCAAC 682
Query 703 AAGGCGGCTGGACGATGCTCAAAATGGGTAAACGAAAAG-TGTCAGGCTGGAGATTCGAG 761
|| |||| |||||| ||| | |||||||| || | | ||||| || || || ||| |
Sbjct 683 AAAGCGGTTGGACGGTGCACGAAATGGGTGAAT-AGTCGGTGTCAAGCCGGTGACTCG-G 740
Query 762 T-ACCGAGCCTTACATTGTTTCACATCACACT-CTTCTT-GCCCATGCCGCTGCAGTGGA 818
| ||||||||||||||| ||||||||| || |||||| ||| |||| || ||||| |
Sbjct 741 CCATCGAGCCTTACATTGTATCACATCAC-CTTCTTCTTTGCC-ATGCTGCGGCAGTACA 798
Query 819 AGAATTTCGAAAATGTGAAAAA-ACTTCGC-ATGATGGCCAA-ATTGGGATAGTACTATC 875
||| || ||||| ||| || || |||| | | |||| || ||||||||||| ||||
Sbjct 799 AGAGTTCCGAAATTGT-AACAAGACTTTACCA-GATGAT-AAGATTGGGATAGTGTTATC 855
Query 876 ACCAAGATGG-TTCGAGCCTTATCATTCCG-ATTCAACTGAC-GATAAAGAAGCAGCTGA 932
|| | ||| ||| |||||||| | ||| || | ||| | ||||||||||| | |||
Sbjct 856 GCCTTGGTGGCTTC-AGCCTTATGACTCCACAT-CGTCTG-CTGATAAAGAAGCCGTTGA 912
Query 933 ACGAG-CTCTTGCCTTTGAAATTGGAT-GGCATCTTGA-TCCAGTCATTCACGGAGATTA 989
||||| | |||||| | ||| | | || ||||| || | ||| || ||| ||||| ||||
Sbjct 913 ACGAGGC-CTTGCCGTAGAAGTAG-ATTGGCAT-TTAAATCCGGTGATTTACGGAAATTA 969
Query 990 TCCAGAGATTGTAAAAAAGTACGCGGGAAATAAATTACCTTCATTT-ACTGTTGAACAAT 1048
||| || | | |||||| | | |||| ||| ||||||| | ||| || | |||||||
Sbjct 970 TCCTGAAAAAATGAAAAAGCATGTGGGACATAGATTACCTGC-TTTCACACTAGAACAAT 1028
Query 1049 CAAAGATGTTACA-AAATTCATCAGATTTCGTTGGAATTAATTACTACACG-GCTCGCTT 1106
||||||||||| | ||||||||||||||| ||||||| || ||||| | | || |||||
Sbjct 1029 CAAAGATGTTA-ATAAATTCATCAGATTTTATTGGAATAAACTACTATA-GTGCACGCTT 1086
Query 1107 CGCTGCTCATCTTCCTCACATAGACCCTGAAAAA-CCTCGTTTCAAAACTGACCACCATG 1165
| | |||||| |||||||||| || ||| | | ||||| |||| |||||| || |||
Sbjct 1087 CACCGCTCATATTCCTCACATTGATCCT-ACTAGGCCTCGATTCAGAACTGATCAGCATT 1145
Query 1166 T-G-GAATGGAAACTGACTAATCACAGTGGTCAC-ATCATCGGACCTGGGGAAGAAAGGG 1222
| | ||| | | | | || |||| |||| ||| | |||||||| ||||| || | |
Sbjct 1146 TTGAGAA-G-AGAGTAACAAATCGCAGTAACCACGAA-ATCGGACCAGGGGATGATCGAG 1202
Query 1223 GCTTCTTATTTTCACACCCGGAAGGCTTACGAAAAGTTCTTAACTATATTAAAGAGAGAT 1282
|| | | || |||| |||||||| |||| |||||||||||| || ||||| | ||
Sbjct 1203 GCATAATGCACTCGTACCCAGAAGGCTTGCGAAGAGTTCTTAACTACATCAAAGATAAAT 1262
Query 1283 ACAATAACA-TGCCAGTCTACATCAAAGAAAATGGAATTAATGACAACGACGACGGTACA 1341
|||||||| | | ||||| || ||||| |||||||| |||||| |||| || ||||||
Sbjct 1263 ACAATAACCCTATC-GTCTATATAAAAGAGAATGGAATCAATGACTACGATGATGGTACA 1321
Query 1342 AAACCAAGAGAAGA-AATTGTGAAGGACACATTTAGGATT-GAATACCATAAG-ACACAT 1398
||| |||| ||| | |||| | ||||||||||||||||| | |||||| || || |||
Sbjct 1322 AAATCAAGGGAA-ACAATTCTCAAGGACACATTTAGGATAAGC-TACCATCAGGAC-CAT 1378
Query 1399 -TTCGAAGAACTTCACAAAGCTATAGTGGAAGATGGGTGTGACGTAAGAGGATATTACGC 1457
|| || ||||||||||||||||| | || ||||||||||| || |||||||||||||
Sbjct 1379 CTTA-AACAACTTCACAAAGCTATAATTGAGGATGGGTGTGATGTTAGAGGATATTACGT 1437
Query 1458 ATGGTCATTGATG-GACAATTTTGAATGGGAGCATGGATACACTGCAAGATTTGGTCTAT 1516
||||| || || ||||| || || ||||||||||||||| || | ||||||||| | |
Sbjct 1438 GTGGTCTTT-ATTCGACAACTTCGAGTGGGAGCATGGATACTCTACTAGATTTGGTATGT 1496
Query 1517 ACTATGTTGATTTTGTCAATGGTCTCAAACGTTATCCAAAAGATTCGGTCAAATGGTTTA 1576
|||||||||| | || || |||| |||| ||||| |||||||| ||||| ||||| |
Sbjct 1497 ACTATGTTGACTATGAAAACAATCTCCAACGGTATCCTAAAGATTCCGTCAACTGGTTCA 1556
Query 1577 AG 1578
||
Sbjct 1557 AG 1558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72485736235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5