BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60180.2
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486486 jgi|Araly1|486486|fgenesh2_kg.5__2478__AT3G60180.1 1005 0.0
> Ahg486486 jgi|Araly1|486486|fgenesh2_kg.5__2478__AT3G60180.1
Length=841
Score = 1005 bits (544), Expect = 0.0
Identities = 619/656 (94%), Gaps = 2/656 (0%)
Strand=Plus/Plus
Query 12 ACTTGTGCGTGATTCATCGTCACATCGCCTTGATCATGGAAACTCCTATCGATGCTCCGA 71
|||||||||||||||||||||||||| |||||||||||||||||||| | ||||||| ||
Sbjct 1 ACTTGTGCGTGATTCATCGTCACATCTCCTTGATCATGGAAACTCCTGTTGATGCTCTGA 60
Query 72 ATAAGGACGAACATGAATGCCCTAGGTGGAAGAAATCAACTGTAGTTTTTGTGTTGGGTG 131
|||||||||||||||| |||||||||||||||| ||||| || |||||||||||||| |
Sbjct 61 TTAAGGACGAACATGAAAGCCCTAGGTGGAAGAAGTCAACGGTGGTTTTTGTGTTGGGAG 120
Query 132 GTCCTGGAAGTGGAAAAGGTACTCAGTGTGCTAATGTTGTGAAGCACTTTAGCTATACCC 191
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GTCCTGGAAGTGGAAAAGGTACTCAGTGTGCTAATCTTGTGAAGCACTTTAGCTATACCC 180
Query 192 ATTTTAGTGCTGGTGATCTTCTCAGAGCAGAAATTAAGTCCGGTTCTGAATTTGGAGCCA 251
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 181 ATTTTAGTGCTGGTGATCTTCTCAGAGCAGAAATTAAGTCTGGTTCTCAATTTGGAGCCA 240
Query 252 TGATCCAAAGTATGATTGCAGAGGGGAGAATAGTGCCGTCTGAGATCACAGTGAAACTTT 311
|||||||||||||||||| || |||||||| || || ||||||||||||||||||||||
Sbjct 241 TGATCCAAAGTATGATTGTTGATGGGAGAATTGTTCCTTCTGAGATCACAGTGAAACTTT 300
Query 312 TGTGTAAAGCTATGGAGGAAAGTGGTAATGATAAGTTCCTTATTGATGGCTTCCCTCGCA 371
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 301 TGTGTAAAGCTATGGAGGAAAGTGGTAATGATAAGTTCCTTATTGATGGTTTTCCTCGCA 360
Query 372 ATGAAGAAAATCGAAACGTATTCGAAAATGTTGCTAGA-ATCGAGCCTGCTTTTGTTCTA 430
||||||||||||| | ||||||||||||||||||| | ||||||||||||||||||||
Sbjct 361 ATGAAGAAAATCGGATTGTATTCGAAAATGTTGCTA-ATATCGAGCCTGCTTTTGTTCTC 419
Query 431 TTCTTTGATTGTCCAGAAGAAGAACTAGAAAGACGCATTATGAGCAGGAACCAGGGAAGA 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTCTTTGATTGTCCAGAAGAAGAACTAGAAAGACGCATTATGAGCAGGAACCAGGGAAGA 479
Query 491 GAAGACGATAATATAGAGACCATAAAGAAGCGATTTAAAGTGTTTGTTGAATCTACCCTC 550
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 480 GAAGACGATAATATAGAGACGGTAAAGAAGCGATTTAAAGTGTTTGTAGAATCTACCCTC 539
Query 551 CCAATTATTAGCTACTACGAATCGAAAGGGAAACTTCGAAAGATCAATGCTGCAAAATCC 610
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 540 CCTATTATTAGCTACTATGAATCTAAAGGGAAACTTCGAAAGATCAATGCTGCAAAACCC 599
Query 611 AGCGAAGAGGTTTTCGAGGCTGTCAGAGTTCTATTTGCATCTGAAACTTGACAAGG 666
|||||||||||||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 600 AGCGAAGAGGTTTTCGAGGCAGTCAAAGTTCTATTTGCATCTTAAACTTGACAAGG 655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25809214809
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5