BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60190.1
Length=2255
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486488 jgi|Araly1|486488|fgenesh2_kg.5__2480__AT3G60190.1 3555 0.0
Ahg483589 jgi|Araly1|483589|fgenesh2_kg.4__2649__AT2G44590.3 1469 0.0
> Ahg486488 jgi|Araly1|486488|fgenesh2_kg.5__2480__AT3G60190.1
Length=2208
Score = 3555 bits (1925), Expect = 0.0
Identities = 2097/2178 (96%), Gaps = 20/2178 (1%)
Strand=Plus/Plus
Query 12 AATTCATTTTCCTATTTTGCCCCTA-CGAATATTTTTCTTCTTCGtc--tc-tctctctc 67
||||||||||||||||||||||||| || |||||||||||||||||| || ||||||||
Sbjct 1 AATTCATTTTCCTATTTTGCCCCTACCG-ATATTTTTCTTCTTCGTCAGTCGTCTCTCTC 59
Query 68 AGCTCTTGAAGTCTTTGGTCTGTTGGCGAATTTTCAAGCAGCTTTCTAATTCTGAACTGA 127
||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 60 AGCTCTTGAAGTC-TTGGTCTGTTGGCGAATTTTCAAGCAGCTTTCTAATTTTAAACTG- 117
Query 128 AAATTTCGTCTTTGGAACTTT-ATATTCTCTCATCTGAAACTGAAGGAGAAGGAAGATGA 186
||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 118 AAATTTCATCTTTGGAACTTTGA-ATTCTCTCATCTGAAACTGAAGGAGAAGGAAGATGA 176
Query 187 CGACTATGGAGAGTTTGATTGGGTTAGTTAATAGGATACAGAGAGCATGTACCGTACTCG 246
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 177 CGACTATGGAGAGTTTGATTGGGTTAGTTAATAGAATACAGAGAGCATGTACCGTACTCG 236
Query 247 GTGACTATGGTGGTGGAACTGGAAGTAACGCTTTCAATTCTCTCTGGGAAGCTCTTCCAA 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GTGACTATGGTGGTGGAACTGGAAGTAACGCTTTCAATTCTCTCTGGGAAGCTCTTCCAA 296
Query 307 CCGTCGCCGTCGTCGGTGGTCAGAGTTCTGGGAAATCTTCGGTTCTTGAGAGTATAGTTG 366
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 297 CCGTCGCCGTCGTCGGTGGTCAGAGTTCTGGGAAATCTTCAGTTCTTGAGAGCATAGTTG 356
Query 367 GGAGAGATTTTCTTCCTAGAGGATCTGGTATCGTTACGAGACGGCCTTTAGTGTTGCAGC 426
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 357 GGAGAGATTTTCTTCCTAGAGGATCTGGTATCGTTACCAGACGGCCTTTAGTGTTGCAGC 416
Query 427 TTCATAAGACTGATGATGGAACAGAGGAGTATGCAGAGTTCCTTCATCTTCCCAAGAAGC 486
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TTCATAAGACGGATGATGGAACAGAGGAGTATGCAGAGTTCCTTCATCTTCCCAAGAAGC 476
Query 487 AATTCACAGATTTTGCTTTGGTTCGCAGGGAGATTCAGGATGAGACTGATAGAATCACAG 546
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 477 AATTCACAGATTTCGCTTTGGTTCGCAAGGAGATTCAGGATGAGACTGATAGAATCACAG 536
Query 547 GGAAAAACAAACAGATATCTCCAGTTCCTATTCACCTCAGTATCTACTCTCCAAATGTTG 606
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GGAAGAACAAACAGATATCTCCAGTTCCTATTCACCTCAGTATCTACTCTCCAAATGTTG 596
Query 607 TGAATTTGACACTCATTGATTTGCCCGGTTTAACTAAAGTGGCTGTTGAGGGACAGCCGG 666
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TGAATTTGACCCTCATTGATTTGCCCGGTTTAACTAAAGTGGCTGTTGAGGGACAGCCGG 656
Query 667 AAACCATTGCTGAGGATATCGAATCCATGGTTCGCACATATGTTGATAAGCCCAATTGTA 726
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 657 AAACCATTGCTGAGGATATTGAATCCATGGTTCGCACATATGTTGATAAGCCCAATTGTA 716
Query 727 TCATATTGGCTATATCTCCTGCCAACCAAGACATTGCCACATCAGATGCAATTAAGCTCG 786
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 717 TCATATTGGCTATATCTCCTGCCAACCAAGACATTGCCACATCGGATGCAATTAAGCTCG 776
Query 787 CAAAAGATGTCGATCCAACAGGTGAGAGGACATTTGGTGTTCTTACCAAGTTAGACTTGA 846
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CAAAAGATGTTGATCCAACAGGTGAGAGGACATTTGGTGTTCTTACCAAGTTAGACTTGA 836
Query 847 TGGACAAAGGAACTAATGCGTTAGAAGTTCTTGAAGGAAGATCTTACAGGCTGCAACATC 906
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TGGACAAAGGAACTAATGCATTAGAAGTTCTTGAAGGAAGATCTTACAGGCTGCAACATC 896
Query 907 CTTGGGTTGGGATAGTGAACCGTTCACAAGCAGATATTAATAAGAATGTCGATATGATGC 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CTTGGGTTGGGATAGTGAACCGTTCACAAGCAGATATTAATAAGAATGTCGATATGATGC 956
Query 967 TTGCAAGACGCAAGGAACGAGAATATTTTGATACCAGTCCTGACTATGGTCACTTAGCCA 1026
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 957 TTGCAAGACGCAAGGAACGAGAATATTTTGACACCAGTTCTGACTATGGTCACTTAGCCA 1016
Query 1027 GCAAAATGGGTTCAGAATATCTGGCAAAGCTGCTCTCTAAGCACTTGGAGTCTGTTATCA 1086
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GCAAAATGGGTTCAGAATACCTGGCAAAGCTGCTCTCTAAGCACTTGGAGTCTGTTATCA 1076
Query 1087 GGACCCGTATTCCAAGTATACTATCCTTAATAAACAAAAGCATTGAAGAACTTGAAAGAG 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GGACCCGTATTCCAAGTATACTATCCTTAATAAACAAAAGCATTGAAGAACTTGAAAGAG 1136
Query 1147 AGTTAGACCGAATGGGTCGGCCTGTCGCAGTTGATGCTGGGGCTCAACTATACACTATAT 1206
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1137 AGTTAGATCGAATGGGTCGGCCTGTTGCAGTTGATGCTGGGGCTCAACTATACACTATAT 1196
Query 1207 TGGAGATGTGCCGTGCATTCGATAAGATATTCAAGGAACATCTTGATGGCGGGCGTCCTG 1266
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1197 TGGAGATGTGCCGTGCATTTGATAAGATATTCAAGGAACATCTGGATGGCGGGCGTCCTG 1256
Query 1267 GAGGTGACCGTATCTATGGAGTCTTTGACAACCAACTTCCAGCTGCACTTAAAAAGCTTC 1326
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GTGGTGACCGTATCTATGGAGTCTTTGACAACCAACTTCCAGCTGCACTTAAAAAGCTTC 1316
Query 1327 CTTTTGATCGCCATCTTTCTCTACAAAGCGTGAAGAAAATCGTGTCCGAGGCAGATGGTT 1386
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1317 CTTTTGATCGCCATCTTTCTCTACAAAGCGTGAAGAAAATCGTGTCCGAGGCAGATGGCT 1376
Query 1387 ATCAACCTCACTTGATTGCACCAGAACAGGGTTATCGCCGTCTAATCGAAGGGGCACTGG 1446
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1377 ATCAACCTCACTTGATTGCACCAGAACAGGGTTATCGCCGCCTAATCGAAGGGGCGCTGG 1436
Query 1447 GTTACTTTAGAGGTCCAGCTGAAGCTTCTGTGGATGCTGTTCACTATGTCTTGAAAGAGC 1506
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1437 GTTACTTTAGAGGTCCAGCCGAAGCTTCTGTGGATGCTGTTCATTATGTCTTGAAAGAGC 1496
Query 1507 TTGTGAGGAAATCAATATCAGAAACTGAGGAGCTAAAGCGTTTCCCTTCACTGCAAGTCG 1566
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TTGTGAGGAAGTCAATATCAGAAACTGAGGAGCTAAAGCGTTTCCCTTCACTGCAAGTCG 1556
Query 1567 AGCTTGCTGCAGCAGCCAACAGCTCCTTGGAGAAATTCAGGGAAGAAAGCAAGAAGTCGG 1626
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 AGCTCGCTGCAGCAGCCAATAGCTCCTTGGAGAAATTCAGGGAAGAAAGCAAGAAGTCGG 1616
Query 1627 TTATTCGACTTGTTGACATGGAATCTGCGTATCTAACCGCTGAGTTCTTCCGGAAACTTC 1686
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1617 TTATTCGACTTGTTGATATGGAATCTGCGTATCTAACAGCTGAGTTCTTCCGGAAACTTC 1676
Query 1687 CTCAAGAAATAGAAAGACCAGTA--A-CCAACAGCAAAAACCAAACCGCTTCTCCTTCGT 1743
|||||||||| |||||||||||| | |||||| |||||||||||||||||| ||||||
Sbjct 1677 CTCAAGAAATGGAAAGACCAGTAGTAACCAACAACAAAAACCAAACCGCTTCGCCTTCGC 1736
Query 1744 CTGCAACATTAGACCAGTATGGAGACGGACATTTCAGAAGGATAGCATCAAATGTATCTG 1803
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1737 CTGCAACATTAGACCAGTATGGAGACGGACATTTCAGAAGGATAGCATCAAATGTATCCG 1796
Query 1804 CGTATGTTAATATGGTTTCGGACACACTTCGTAACACCATTCCAAAAGCTTGTGTGTACT 1863
||||||| || ||||||||||||||||||||||| ||||| ||||| |||||||| || |
Sbjct 1797 CGTATGTCAACATGGTTTCGGACACACTTCGTAATACCATCCCAAAGGCTTGTGTATATT 1856
Query 1864 GTCAGGTTAGACAAGCCAAGCTCGCATTGCTCAATTACTTCTACTCTCAGATCAGCAAGA 1923
||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 1857 GTCAGGTTAGACAAGCCAAGCTCGCGTTACTCAATTACTTCTACTCACAGATCAGCAAGA 1916
Query 1924 GAGAGGGGAAACAGTTGGGACAGTTACTAGATGAAGATCCGGCATTGATGGACCGGAGAC 1983
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1917 GAGAGGGAAAACAGTTGGGACAGTTACTAGATGAAGATCCGGCATTGATGGACCGGAGAC 1976
Query 1984 TAGAGTGCGCGAAGAGGCTAGAGTTATACAAGAAAGCAAGAGATGAGATTGATGCTGTTG 2043
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1977 TAGAGTGCGCGAAGAGGCTCGAGTTATATAAGAAAGCAAGAGATGAGATTGATGCTGTTG 2036
Query 2044 CTTGGGTAAGATGATAAAACCTAAAA-GTGTGTTTCTGGTGATGGTT-TTAG-AGAACTA 2100
| |||||| ||||||||| || ||| |||||||||||||||||||| || | |||||
Sbjct 2037 CCTGGGTACGATGATAAACCC-AAAGTGTGTGTTTCTGGTGATGGTTGTTTTTA-AACTA 2094
Query 2101 TAAATTCGTCTGTTGTTTAAGTTCGTTGACTATGTCTTTGTATGTATGTATATGATCATC 2160
|||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 2095 -AAATTCGTGTGTTGTTTAAGTTCGTTGGCTATGTCTTTGTAT--ATGTATATGATCATC 2151
Query 2161 AGACCCTATTGAGAGAGA 2178
||||||| ||||||||||
Sbjct 2152 AGACCCTGTTGAGAGAGA 2169
> Ahg483589 jgi|Araly1|483589|fgenesh2_kg.4__2649__AT2G44590.3
Length=2065
Score = 1469 bits (795), Expect = 0.0
Identities = 1555/1913 (81%), Gaps = 87/1913 (5%)
Strand=Plus/Plus
Query 179 GAAGATGACGACTATGGAGAGTTTGAT-TGGGTTAGTTAATAGGATACAGAGAGCATGTA 237
|||| | ||||| |||||||||||||| | ||| ||||||| ||||||||||||||| |
Sbjct 109 GAAGTTAACGACAATGGAGAGTTTGATCT-TGTTGGTTAATACGATACAGAGAGCATGCA 167
Query 238 CCGTACTCGGTGACT-ATGGTGGTGGAACTGGAAGTAACGCT-T-TCAATTCTCTCTGGG 294
|| | |||| || | |||| || || | || ||||||| | || |||||||||||
Sbjct 168 CCACAGTCGGCGA-TCATGGCGGCGG---T--AA-TAACGCTCTATC--TTCTCTCTGGG 218
Query 295 AAGCTCTTCCAACCGTCGCCGTCGTCGGTGGTCAGAGTTCTGGGAAATCTTCGGTTCTTG 354
|||||||||| ||||||||||||| ||||| ||||||||||| |||||||||||||| |
Sbjct 219 AAGCTCTTCCTTCCGTCGCCGTCGTTGGTGGCCAGAGTTCTGGTAAATCTTCGGTTCTAG 278
Query 355 AGAGTATAGTTGGGAGAGATTTTCTTCCTAGAGGATCTGGTATCGTTACGAGACGGCCTT 414
|||| || || ||||||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct 279 AGAGCATCGTCGGGAGAGATTTTCTTCCCAGAGGATCCGGTATTGTTACGAGACGGCCTT 338
Query 415 TAGTGTTGCAGCTTCATAAGACTGATGATGGAACAGAGGAGTATGCAGAGTTCCTTCATC 474
| || || || |||||||||||||| ||||||||||||| || || ||||| || || |
Sbjct 339 TGGTTTTACAACTTCATAAGACTGAAAATGGAACAGAGGATTACGCTGAGTTTCTCCACC 398
Query 475 TTCCCAAGAAGCAATTCA-CAGATTT-TGCTTTGGTTCGCAGGGAGATTCAGGATGAGAC 532
|| |||||||| |||||| || |||| | |||||||| | | ||||||| ||||||||||
Sbjct 399 TTACCAAGAAGAAATTCACCA-ATTTCT-CTTTGGTTAGAAAGGAGATTGAGGATGAGAC 456
Query 533 TGATAGAATCACAGGGAAAAACAAACAGATATCTCCAGTTCCTATTCACCTCAGTATCTA 592
|||||||||||| ||||| ||||||||||| |||||| ||||||||||||| || || |
Sbjct 457 TGATAGAATCACTGGGAAGAACAAACAGATTTCTCCAATTCCTATTCACCTTAGCATTTT 516
Query 593 CTCTCCAAATGTTGTGAAT-TTGACACTCATTGATTTGCCCGGTTTAACTAAAGTGGCTG 651
|||||| |||||||||||| || || ||||||||||| || ||||| |||||||| || |
Sbjct 517 CTCTCCCAATGTTGTGAATCTT-ACTCTCATTGATTTACCTGGTTTGACTAAAGTTGCCG 575
Query 652 TTGAGGGACAGCCGGAAACCATTGCTGAGGATATCGAATCCATGGTTCGCACATATGTTG 711
|||| |||||||| || || || | ||||||||||||| ||||||||||| |||| ||||
Sbjct 576 TTGAAGGACAGCCAGATACTATAGTTGAGGATATCGAAACCATGGTTCGCTCATACGTTG 635
Query 712 ATAAGCCCAATTGTATCATATTGGCTATATCTCCTGCCAACCAAGACATTGCCACATCAG 771
| ||||| || ||| | ||| | || ||||||||||| || |||||||| || ||||| |
Sbjct 636 AAAAGCCTAACTGTCTTATACTAGCAATATCTCCTGCTAATCAAGACATAGCTACATCGG 695
Query 772 ATGCAATTAAGCTCGCAAAAGATGTCGATCCAACAGGTGAGAGGACATTTGGTGTTCTTA 831
|||| || |||||||||||||| || |||||||||||||| || || ||||| || || |
Sbjct 696 ATGCGATGAAGCTCGCAAAAGAAGTGGATCCAACAGGTGATAGAACGTTTGGAGTGCTGA 755
Query 832 CCAAGTTAGACTTGATGGACAAAGGAACTAATGCGTTAGAAGTTCTTGAAGGAAGATCTT 891
| ||||||||||| |||||||||||||||||||| | || ||| | |||||||| ||||
Sbjct 756 CAAAGTTAGACTTAATGGACAAAGGAACTAATGCACTGGACGTTATCGAAGGAAGGTCTT 815
Query 892 ACAGGCTGCAACATCCTTGGGTTGGGATAGTGAACCGTTCACAAGCAGATATTAATAAGA 951
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 ACAGGCTGAAATATCCTTGGGTTGGGATAGTGAACCGTTCACAAGCAGATATTAATAAGA 875
Query 952 ATGTCGATATGATGCTTGCAAGACGCAAGGAACGAGAATATTTTGATACCAGTCCTGACT 1011
|||| ||||||||| |||| ||| | || || |||||||| ||||| ||||| |||||||
Sbjct 876 ATGTTGATATGATGGTTGCGAGAAGGAAAGAGCGAGAATACTTTGAAACCAGCCCTGACT 935
Query 1012 ATGGTCACTTAGCCAGCAA-AATGGGTTCAGAATATCTGGCAAAGCTGCTCTCTAAGCAC 1070
||||||||||||||| ||| |||||| ||||||||||| |||||||| |||||||||| |
Sbjct 936 ATGGTCACTTAGCCA-CAAGAATGGGATCAGAATATCTTGCAAAGCTTCTCTCTAAGCTC 994
Query 1071 TTGGAGTCTGTTATCAGGACCCGTATTCCAAGTATACTATCCTTAATAAACAA-AAGCAT 1129
|| || |||||||| ||| |||||||||||||||| |||||||| || ||||| || |||
Sbjct 995 TTAGAATCTGTTATAAGGTCCCGTATTCCAAGTATCCTATCCTTGATCAACAACAA-CAT 1053
Query 1130 TGAAGAACTTGAAAGAGAGTTAGACCGAAT-GGGTC-GGCCTGTCGC-AGTTGATGCTGG 1186
|| ||||| |||||||||||||||| ||| ||| | |||||||||| | ||||||||||
Sbjct 1054 CGAGGAACTCGAAAGAGAGTTAGACC-AATTGGG-CAGGCCTGTCGCGA-TTGATGCTGG 1110
Query 1187 GGCTCAACTATACACTATATTGGAGA-TGTGCCGTGCATTCGATAAGATATTCAAGGAAC 1245
||||||||||||||||| |||| || |||| || ||||| || ||||||||||| || |
Sbjct 1111 AGCTCAACTATACACTATCTTGG-GAATGTGTCGAGCATTTGAAAAGATATTCAAAGAGC 1169
Query 1246 ATCTTG-ATGGCGGGCGTCCTGGAGGTG-ACCGTATCTATGGAGTCTTTGACAACCAA-C 1302
|| ||| ||||||||||||||||||||| || | ||||| ||| |||||||| || || |
Sbjct 1170 AT-TTGGATGGCGGGCGTCCTGGAGGTGCAC-GCATCTACGGAATCTTTGACTAC-AATC 1226
Query 1303 TTCCAGCTGC-ACTTAAAAAGCTTCCTTTTGATCGCCATCTTTC-TCTACAAAGCGTGAA 1360
||||| | || | ||||||| ||||| |||||||| |||||||| | | ||||| || ||
Sbjct 1227 TTCCAACAGCCA-TTAAAAAACTTCCATTTGATCGTCATCTTTCAT-TGCAAAGTGTTAA 1284
Query 1361 GAAAATCGTGTCCGAGGCAGATGGTTATCAACCTCACTTGATTGCACCAGAACAGGGTTA 1420
|| ||| || || || | ||||| ||||||||||||||||| ||||||||| ||||||
Sbjct 1285 GAGAATTGTATCAGAATCTGATGGCTATCAACCTCACTTGATAGCACCAGAATTGGGTTA 1344
Query 1421 TCGCCGTCTAATCGAAGGGGCACTGGGTTACTTTAGAGGTCCAGCTGAAGCTTCTGTGGA 1480
||| ||||| || ||||| |||| | | ||||||||||||||||||||||||||| |
Sbjct 1345 TCGTCGTCTCATTGAAGGATCACTAAATCATTTTAGAGGTCCAGCTGAAGCTTCTGTGAA 1404
Query 1481 TGCTGTTCACT-ATGTCTTGAAAGAGCTTGTGAGGAAATCAATATCAGAAACTGAGGAGC 1539
|||| |||| | | |||| ||||||||||| |||||| |||| |||||||| |||||||
Sbjct 1405 TGCTATTCATTTAA-TCTTAAAAGAGCTTGTAAGGAAAGCAATCTCAGAAACCGAGGAGC 1463
Query 1540 TAAAGCGTTTCCCTTCACTGCAAGTCGAGCTT-GCTGCAGCAGCCAACAGC-TC-CTTGG 1596
|||| |||||||||||||| ||| | ||| || | ||| ||||| ||| | || || |
Sbjct 1464 TAAAACGTTTCCCTTCACTACAAATTGAG-TTAGTTGCTGCAGCAAACT-CATCACTAG- 1520
Query 1597 AGAAATT-CAGGGAAGAAAGCAAGAAGTCGGTTATTCGACTT-GTTGACATGGAATC-TG 1653
| || || | | |||||||||| |||||| ||| || || || || ||||||||||| |
Sbjct 1521 ACAAGTTTC-GTGAAGAAAGCATGAAGTCAGTTCTTAGA-TTAGTCGACATGGAATCAT- 1577
Query 1654 CGTATCTAACCGCTGAGTTCTTCCGGAAACTTCCTCAAGAAATAGAAAGACCAGTAACCA 1713
| |||||||| | ||| ||||| || || |||| | ||||| ||| || || |
Sbjct 1578 CATATCTAACGGTTGACTTCTTTCGCAAGCTTCATGTAGAAAGCCAAA-ACGTGTCTCTT 1636
Query 1714 ACAGCAAAAACCAAACCGCTTCTCCTTCGTCTGCAACATTAGACCAGTATGGAGACGGAC 1773
| || ||| || | | | | |||| ||||| ||||| || ||||
Sbjct 1637 TCTTCACCAAC-AA-CAACAACAAC---------AACA---GACCAATATGGTGAAGGAC 1682
Query 1774 ATTTCAGAAGGATAGCATCAAATGTAT-CTGCGTATGTTAATATGGTTTCGGACACACTT 1832
| ||||||| |||||| |||||||| | || | ||| | || |||||| | || ||||||
Sbjct 1683 AGTTCAGAAAGATAGCTTCAAATGT-TGCTTCTTATATCAAGATGGTTGCAGAGACACTT 1741
Query 1833 CGT-AACACCATTCCAAAAGCTTGTGTGTAC-T-GTCAGGTTAGACAAGCCAAGCTCGCA 1889
|| ||||| ||||| || ||| || ||| | | | || ||||||||||| || ||| |
Sbjct 1742 -GTTAACACTATTCCTAAGGCT-GT-TGTTCATTGCCAAGTTAGACAAGCGAAACTCTCT 1798
Query 1890 TTGCTCAATTACTTCTACT-CTCAGATCAG-CAAGAGAGAGGGGAAACAGTTGGGACAGT 1947
||||| ||||||||||| | | |||||||| || ||| |||||| || | | |||||||
Sbjct 1799 TTGCTTAATTACTTCTA-TGCACAGATCAGTCA-GAGTCAGGGGAGACGGCTAGGACAGT 1856
Query 1948 TACTAGATGAAGA-TCCGGCATTGATGGACCGGAGACTAG-AGTGCGCGAAGAGGCTAGA 2005
|| ||||||| || ||||||||||||||| ||||| | | | || || |||||||| ||
Sbjct 1857 TATTAGATGA-GAATCCGGCATTGATGGAAAGGAGAGT-GCAATGTGCAAAGAGGCTCGA 1914
Query 2006 GTTATACAAGAAAGCAAGAGATGAGATTGATGCTGTTGCTTGGGTAAGATGAT 2058
| |||||||||| || ||||||||||||||||| | | |||||| ||||||
Sbjct 1915 GCTATACAAGAAGGCTAGAGATGAGATTGATGCAGCGGTTTGGGTTCGATGAT 1967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84903156105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5