BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G60200.1 Length=1264 Score E Sequences producing significant alignments: (Bits) Value Ahg486489 jgi|Araly1|486489|fgenesh2_kg.5__2481__AT3G60200.1 1332 0.0 Ahg483592 jgi|Araly1|483592|fgenesh2_kg.4__2652__AT2G44600.1 147 3e-34 > Ahg486489 jgi|Araly1|486489|fgenesh2_kg.5__2481__AT3G60200.1 Length=937 Score = 1332 bits (721), Expect = 0.0 Identities = 884/958 (92%), Gaps = 30/958 (3%) Strand=Plus/Plus Query 42 TTTTATCTTCAATTCTCCTCCGATGAGGTGTAAAAGACACACCGTCGATCTCAGCAGCAG 101 ||||||||| ||||||| ||||||||||||||| ||||||||||||||| |||||||||| Sbjct 1 TTTTATCTTTAATTCTCTTCCGATGAGGTGTAAGAGACACACCGTCGATTTCAGCAGCAG 60 Query 102 CAACGGCGTTTGCGCTTCTTGCCTCCGTGAACGTCTCCTCTCTCTCGCCGCTTCCGCCGC 161 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 61 CAACGGCGTATGCGCTTCTTGCCTCCGTGAACGTCTCCTCTCCCTCGCCGCTTCCGCCGC 120 Query 162 CGT-ATCAGCCGCCGTAGAAGATAATCAATCAAAG-AAATCTAATAACAATAATCATCCT 219 | | | ||||||||||||||||||||||||| | | ||||| | |||||||||||| Sbjct 121 CATCA-CAGCCGCCGTAGAAGATAATCAATC-ACGCAAATC---T---AATAATCATCCT 172 Query 220 CCGCTTTTGATTTTCCCTCGCTCTGTTTCTCCTTACGTTACCCGTAGAAAATCCGACGCC 279 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 173 CCGCTTTTGATTTTCCCTCGCTCTGTTTCTCCTTATGTAACCCGTAGAAAATCCGACGCC 232 Query 280 GGAG-CCG-GT-GGAGGAGATCCTTTAGTTTCTTCTAATCGGAGATTCATTACCACGCCA 336 |||| | | || ||||||||||| | || ||||||||||||||||||| |||||||| Sbjct 233 GGAGTCGGAGTCGGAGGAGATCC--T-CTTACTTCTAATCGGAGATTCATCACCACGCCT 289 Query 337 CAGATAGATCTCGTCGGATATTCATGCAAAGATTTCGAATCGAATCGATCAAATAAATCA 396 ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| Sbjct 290 CAGATAGATCTCGTCGGCTATTCGTGCAAAGATTTCGAATCGAATCGATCTTATAAATCA 349 Query 397 AAACAAGGTAAAAAAGTATCTAGATTCTCGAATCTATTCAGAGCTAGATCTGAAGATTTC 456 |||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 350 AAACAAGGCAAAAAATTATCTAGATTCTCGAATCTGTTCAGAGCTAGATCTGAAGATTTT 409 Query 457 GA-TACCAATCCCAAATCCAACAATCCTAGATTCTCCTCATGCGACGCGTCTGAGATTTC 515 || || ||||| ||||||||||||||||||| | | |||||||||||||||||||| || Sbjct 410 GATTA-CAATCGCAAATCCAACAATCCTAGA-T-T-CTCATGCGACGCGTCTGAGA-TT- 463 Query 516 ATCTTCTTCTTCCTCTTCACGTTCATGGATCTCGACGATTCTCTCCACCGGTCGACGTAA 575 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 464 -TCTTCTTCTTCTTCTTCACGTTCATGGATCTCGACGATTCTCTCCACCGGTCGCCGTAA 522 Query 576 AAAGCAACCAACCACCGCGTGTTACATCGAAGACGTTATCGCTGCG-CGTAGACCTCAAC 634 |||||||||||||||||||||||| ||||||||||| ||||||| | ||||||||||||| Sbjct 523 AAAGCAACCAACCACCGCGTGTTATATCGAAGACGTAATCGCTG-GTCGTAGACCTCAAC 581 Query 635 GTATATACTGTAGAGGAATGTCACCTGTAAGAGATACGGAACCGGAGCAGTCGGCGGAAT 694 | ||||||||||||||||||||||||| |||||||||||||| |||| |||| |||||| Sbjct 582 GGATATACTGTAGAGGAATGTCACCTGCGAGAGATACGGAACCAGAGCCGTCGTCGGAAT 641 Query 695 CAATCGAGGAATTGAGGAGAACTCCGGCGACGAAAACTCCGGGAAGGAGGAAGATTGCG- 753 |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 642 CAATTGAGGAATTGAGAAGAACTCCGGCGACGAAAACTCCGGGAAGGAGGAAGATTGCGA 701 Query 754 ATGGGGATAGGGAAGAGC-ATGTCGGGGATGGCTTTTTGTTTGAGTCCGTTGGTGAGAGC 812 || ||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| Sbjct 702 AT-GGGATAGGGAAGA-CTATGTCGGGGATGGCTTTTTGCTTGAGTCCGTTGGTGAGAGC 759 Query 813 TAGTCCTAACTGTCCGTTTAAACGGAAAATGAGATTTCCATCGGAGTTTGGTAATTCTGG 872 ||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||| || Sbjct 760 TAGTCCTAATTGTCCGTTTAAACGGAAAATGAGATTTCCATCGGAATTTGGTACTTCCGG 819 Query 873 GGAGGTAACGGCGGTGCCGGAAAAGCCTCATATATCAGCAGCGGCGTCGTTTTGTGCAAA 932 |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 820 GGAGGTGACGGCGGTGCCGGGAAAGCCTCATATATCAGCAGCGGCGTCGTTTTGTGCAAA 879 Query 933 TAGATCGAAGAAGCTTGTGGATTTAGGTAGAGTTGATCGCCGCCGTTGAGtttttttA 990 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 880 CAGATCGAAGAAGCTTGTGGATTTAGGTAGAGTTGATCGCCGCCGTTGAGTTTTTTTA 937 > Ahg483592 jgi|Araly1|483592|fgenesh2_kg.4__2652__AT2G44600.1 Length=1265 Score = 147 bits (79), Expect = 3e-34 Identities = 221/288 (77%), Gaps = 15/288 (5%) Strand=Plus/Plus Query 702 GGA-ATTGAGGAGAACTCCGGCGACGA-AAACTCCGGGAAGGAGGAAGA--TTG-CGATG 756 ||| ||| || ||||| |||| || | |||||||||||||| |||| | |||| Sbjct 816 GGAGATTAAGAAGAACCCCGGTGA-TAGGAACTCCGGGAAGGAAAAAGACGGCGACGATT 874 Query 757 GGGATAGGGAAG-AGCATGTCGGGGATGGCTTTTTGTTTGAGTCCGTTGGTGAGAGCTAG 815 ||||| || || || | || |||||||||||||| |||||||| || |||||||||| Sbjct 875 GGGAT-TGGTAGAAGTGTATCAGGGATGGCTTTTTGCTTGAGTCCATTAGTGAGAGCTAA 933 Query 816 TCCTAACTGTCCGTTTAAACGGAAAATGAGATTTCCATCGGAGTTTGGTA-ATTCTGGGG 874 ||||||||| ||| ||| ||||| || |||||| |||| ||||| | |||| || | Sbjct 934 ACCTAACTGTTCGTCTAATTGGAAAGCGAAATTTCCGCCGGATTTTGG-ATATTCCGGCG 992 Query 875 AGGT-AACGGCGGTGCCGGAAAAGCCTCATATATCAGCAGCGGCGTCGTTTTGTGCAAAT 933 | | || | | | |||| ||||||||| | ||| | |||||||| ||||| | || Sbjct 993 AATTGAA-GTC--T-CCGGCGAAGCCTCATCTTTCAACGGCGGCGTCTTTTTGCGGTAAC 1048 Query 934 AGATCGAAGAAGCTTGTGGATTTAGGTAGAGTTGATCGCCGCCGTTGA 981 | || ||||||||||||||||||||||||||||||| |||||||||| Sbjct 1049 CGGTCTAAGAAGCTTGTGGATTTAGGTAGAGTTGATCACCGCCGTTGA 1096 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47234294163 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5