BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60200.1
Length=1264
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486489 jgi|Araly1|486489|fgenesh2_kg.5__2481__AT3G60200.1 1332 0.0
Ahg483592 jgi|Araly1|483592|fgenesh2_kg.4__2652__AT2G44600.1 147 3e-34
> Ahg486489 jgi|Araly1|486489|fgenesh2_kg.5__2481__AT3G60200.1
Length=937
Score = 1332 bits (721), Expect = 0.0
Identities = 884/958 (92%), Gaps = 30/958 (3%)
Strand=Plus/Plus
Query 42 TTTTATCTTCAATTCTCCTCCGATGAGGTGTAAAAGACACACCGTCGATCTCAGCAGCAG 101
||||||||| ||||||| ||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1 TTTTATCTTTAATTCTCTTCCGATGAGGTGTAAGAGACACACCGTCGATTTCAGCAGCAG 60
Query 102 CAACGGCGTTTGCGCTTCTTGCCTCCGTGAACGTCTCCTCTCTCTCGCCGCTTCCGCCGC 161
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 CAACGGCGTATGCGCTTCTTGCCTCCGTGAACGTCTCCTCTCCCTCGCCGCTTCCGCCGC 120
Query 162 CGT-ATCAGCCGCCGTAGAAGATAATCAATCAAAG-AAATCTAATAACAATAATCATCCT 219
| | | ||||||||||||||||||||||||| | | ||||| | ||||||||||||
Sbjct 121 CATCA-CAGCCGCCGTAGAAGATAATCAATC-ACGCAAATC---T---AATAATCATCCT 172
Query 220 CCGCTTTTGATTTTCCCTCGCTCTGTTTCTCCTTACGTTACCCGTAGAAAATCCGACGCC 279
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 173 CCGCTTTTGATTTTCCCTCGCTCTGTTTCTCCTTATGTAACCCGTAGAAAATCCGACGCC 232
Query 280 GGAG-CCG-GT-GGAGGAGATCCTTTAGTTTCTTCTAATCGGAGATTCATTACCACGCCA 336
|||| | | || ||||||||||| | || ||||||||||||||||||| ||||||||
Sbjct 233 GGAGTCGGAGTCGGAGGAGATCC--T-CTTACTTCTAATCGGAGATTCATCACCACGCCT 289
Query 337 CAGATAGATCTCGTCGGATATTCATGCAAAGATTTCGAATCGAATCGATCAAATAAATCA 396
||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 290 CAGATAGATCTCGTCGGCTATTCGTGCAAAGATTTCGAATCGAATCGATCTTATAAATCA 349
Query 397 AAACAAGGTAAAAAAGTATCTAGATTCTCGAATCTATTCAGAGCTAGATCTGAAGATTTC 456
|||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 350 AAACAAGGCAAAAAATTATCTAGATTCTCGAATCTGTTCAGAGCTAGATCTGAAGATTTT 409
Query 457 GA-TACCAATCCCAAATCCAACAATCCTAGATTCTCCTCATGCGACGCGTCTGAGATTTC 515
|| || ||||| ||||||||||||||||||| | | |||||||||||||||||||| ||
Sbjct 410 GATTA-CAATCGCAAATCCAACAATCCTAGA-T-T-CTCATGCGACGCGTCTGAGA-TT- 463
Query 516 ATCTTCTTCTTCCTCTTCACGTTCATGGATCTCGACGATTCTCTCCACCGGTCGACGTAA 575
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 464 -TCTTCTTCTTCTTCTTCACGTTCATGGATCTCGACGATTCTCTCCACCGGTCGCCGTAA 522
Query 576 AAAGCAACCAACCACCGCGTGTTACATCGAAGACGTTATCGCTGCG-CGTAGACCTCAAC 634
|||||||||||||||||||||||| ||||||||||| ||||||| | |||||||||||||
Sbjct 523 AAAGCAACCAACCACCGCGTGTTATATCGAAGACGTAATCGCTG-GTCGTAGACCTCAAC 581
Query 635 GTATATACTGTAGAGGAATGTCACCTGTAAGAGATACGGAACCGGAGCAGTCGGCGGAAT 694
| ||||||||||||||||||||||||| |||||||||||||| |||| |||| ||||||
Sbjct 582 GGATATACTGTAGAGGAATGTCACCTGCGAGAGATACGGAACCAGAGCCGTCGTCGGAAT 641
Query 695 CAATCGAGGAATTGAGGAGAACTCCGGCGACGAAAACTCCGGGAAGGAGGAAGATTGCG- 753
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 CAATTGAGGAATTGAGAAGAACTCCGGCGACGAAAACTCCGGGAAGGAGGAAGATTGCGA 701
Query 754 ATGGGGATAGGGAAGAGC-ATGTCGGGGATGGCTTTTTGTTTGAGTCCGTTGGTGAGAGC 812
|| ||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||
Sbjct 702 AT-GGGATAGGGAAGA-CTATGTCGGGGATGGCTTTTTGCTTGAGTCCGTTGGTGAGAGC 759
Query 813 TAGTCCTAACTGTCCGTTTAAACGGAAAATGAGATTTCCATCGGAGTTTGGTAATTCTGG 872
||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||| ||
Sbjct 760 TAGTCCTAATTGTCCGTTTAAACGGAAAATGAGATTTCCATCGGAATTTGGTACTTCCGG 819
Query 873 GGAGGTAACGGCGGTGCCGGAAAAGCCTCATATATCAGCAGCGGCGTCGTTTTGTGCAAA 932
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 820 GGAGGTGACGGCGGTGCCGGGAAAGCCTCATATATCAGCAGCGGCGTCGTTTTGTGCAAA 879
Query 933 TAGATCGAAGAAGCTTGTGGATTTAGGTAGAGTTGATCGCCGCCGTTGAGtttttttA 990
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 CAGATCGAAGAAGCTTGTGGATTTAGGTAGAGTTGATCGCCGCCGTTGAGTTTTTTTA 937
> Ahg483592 jgi|Araly1|483592|fgenesh2_kg.4__2652__AT2G44600.1
Length=1265
Score = 147 bits (79), Expect = 3e-34
Identities = 221/288 (77%), Gaps = 15/288 (5%)
Strand=Plus/Plus
Query 702 GGA-ATTGAGGAGAACTCCGGCGACGA-AAACTCCGGGAAGGAGGAAGA--TTG-CGATG 756
||| ||| || ||||| |||| || | |||||||||||||| |||| | ||||
Sbjct 816 GGAGATTAAGAAGAACCCCGGTGA-TAGGAACTCCGGGAAGGAAAAAGACGGCGACGATT 874
Query 757 GGGATAGGGAAG-AGCATGTCGGGGATGGCTTTTTGTTTGAGTCCGTTGGTGAGAGCTAG 815
||||| || || || | || |||||||||||||| |||||||| || ||||||||||
Sbjct 875 GGGAT-TGGTAGAAGTGTATCAGGGATGGCTTTTTGCTTGAGTCCATTAGTGAGAGCTAA 933
Query 816 TCCTAACTGTCCGTTTAAACGGAAAATGAGATTTCCATCGGAGTTTGGTA-ATTCTGGGG 874
||||||||| ||| ||| ||||| || |||||| |||| ||||| | |||| || |
Sbjct 934 ACCTAACTGTTCGTCTAATTGGAAAGCGAAATTTCCGCCGGATTTTGG-ATATTCCGGCG 992
Query 875 AGGT-AACGGCGGTGCCGGAAAAGCCTCATATATCAGCAGCGGCGTCGTTTTGTGCAAAT 933
| | || | | | |||| ||||||||| | ||| | |||||||| ||||| | ||
Sbjct 993 AATTGAA-GTC--T-CCGGCGAAGCCTCATCTTTCAACGGCGGCGTCTTTTTGCGGTAAC 1048
Query 934 AGATCGAAGAAGCTTGTGGATTTAGGTAGAGTTGATCGCCGCCGTTGA 981
| || ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1049 CGGTCTAAGAAGCTTGTGGATTTAGGTAGAGTTGATCACCGCCGTTGA 1096
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47234294163
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5