BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60210.1
Length=826
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486490 jgi|Araly1|486490|fgenesh2_kg.5__2482__AT3G60210.1 1022 0.0
> Ahg486490 jgi|Araly1|486490|fgenesh2_kg.5__2482__AT3G60210.1
Length=747
Score = 1022 bits (553), Expect = 0.0
Identities = 663/712 (93%), Gaps = 23/712 (3%)
Strand=Plus/Plus
Query 58 GCATCAAGAGAAGTCTGTAGAAGAAAGGTTTGTCCAACAACACAGCAAGCACGAGCGAAT 117
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 GCAACAAGAGAAGTCTGTAGAAGAAAGGTTTGTCCAACAACACAGCAAGAACGAGCGAAT 60
Query 118 CTCCTCAACTTCCCCAACCT---AATAGCTCGCCGTGTCGTGACTACTCACCGAGTAGGA 174
||||||||||| |||||||| ||||||| |||||||||||||| ||| ||||||||||
Sbjct 61 CTCCTCAACTT-CCCAACCTAAAAATAGCTTGCCGTGTCGTGACTCCTCGCCGAGTAGGA 119
Query 175 ACCTAACCTTATCCAATGGCTTCGAGTTTCATTACAGTACCTAAACCCTTCTTGTC-CTT 233
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||
Sbjct 120 ACCTAACCTTATCCAATGGCTTCGACTTTCATTACAGTACCTAAACCTTTCTTGTCTCTT 179
Query 234 CCCCATCAAAACCAATGCTCCTACTCTACCTCAGCAGACCCTTCTCGGAATTCGAAGAAA 293
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 180 -CCCATCAAAACCAATGCTCCTACTCTACCTCACCAGACCCTTCTCGGTATTCGAAGAAA 238
Query 294 TTCCTTTAGAATTAACGCCGTTTCCACCAAATGGGAACCGGCAAAGGTTGTACCACAAGC 353
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 239 TTCCCTTAGAATTAACGCCGTTTCCACCAAATGGGAACCGGCAAAGGTTGTTCCACAAGC 298
Query 354 AGACAGGGTCCTTGTCCGCCTTGAAGTGCTTCCTGAGAAATCCTCAGGAGGAGTACTGTT 413
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 299 AGACAGGGTCCTTGTCCGTCTTGAAGTGCTTCCTGAGAAATCCTCAGGAGGAGTATTGTT 358
Query 414 GCCTAAATCAGCTGTGAAATTCGAGAGGTACCTAACAGGCGAGGTTGTCTCTGTTGGGTC 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ACCTAAATCAGCTGTGAAATTCGAGAGGTACCTAACAGGCGAGGTTGTCTCTGTTGGGTC 418
Query 474 TGAGGTTGGGGAAGTGGAACCTGGCAAGAAGGTTTTGTTCTCTGATATGAGCGCCTATGA 533
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 419 TGAGGTTGGGGAAGTGGAACCTGGCAAGAAGGTTGTGTTCTCTGATATGAGCGCCTATGA 478
Query 534 GGTTGATTTTGGAACAGAAGATGCTAAGCATTGCTTTTGCAAAGAAAGCGACTTGTTAGC 593
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 479 GGTTGATTTTGGAACAGA---TGCTAAGCATTGCTTTTGCAAAGAAAGCGACTTGTTAGC 535
Query 594 TATCGTCCAGTGAAAAGTAGCATCGAAGTTGTGCATTCAATGATATCATCTACCAAAGAG 653
|||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||| ||
Sbjct 536 AATCGTCCAGTGAAAAGTAGCATTGAAGTTGTGCATTCAATAATATCATATACCAAAAAG 595
Query 654 -TTTCT-GGTTTT------CTTGTAATTTCAGTGACAGCAGCATATGTTCTGTTGTTT-G 704
|||| |||||| |||||||||||||||||| || ||||||||||| ||| |
Sbjct 596 ATTTCCAGGTTTTGTTTTTCTTGTAATTTCAGTGACATCA---TATGTTCTGTTTTTTTG 652
Query 705 -AGTTTCATGAAAGAGCTCAAAGTGGAGATTGATCGGAAACCGAAATTGTTA 755
| | ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 653 CA-TCTCATGTAAGAGCTCAAAGTGAAGATTGATCGGAAACCGAAATTGTTA 703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30536456517
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5