BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60220.1
Length=1489
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486491 jgi|Araly1|486491|fgenesh2_kg.5__2483__AT3G60220.1 1618 0.0
> Ahg486491 jgi|Araly1|486491|fgenesh2_kg.5__2483__AT3G60220.1
Length=1299
Score = 1618 bits (876), Expect = 0.0
Identities = 1111/1216 (91%), Gaps = 50/1216 (4%)
Strand=Plus/Plus
Query 293 atggaatctctcATCAATCCCAGCCATGGCGGAGGAAACTACGATTCTCACTCTTCTTCT 352
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 ATGGATTCTCTCATCAATCCCAGCCATGGCGGAGGAAACTACGATTCTCACTCTTCTTCT 173
Query 353 CTCGATAGTCTCAAACCAAGCGTACTAGTCATCATTCTCATTCTCCTCATGACTCTTCTC 412
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 174 CTCGATAGTCTCAAACCAAGCGTACTAGTCATCATTCTCATCCTTCTAATGACTCTTCTC 233
Query 413 ATCTCCGTTTCCATTTGCTTCCTCCTCCGCTGTCTCAATCGCTGTAGCCACCGCTCCGTT 472
|||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 234 ATCTCCGTCTCCATTTGTTTCCTCCTCCGTTGTCTCAATCGCTGTAGCCACCGCTCCGTT 293
Query 473 CTCCCTCT-T--TCATCTTCCTCTTCCGTCGCAACCGTAACTTCCGATTCCCGACGATTC 529
|||||| | ||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 294 ATCCCTCCGTCGTCATCTTCCACTTCCGCCGCAACCGTAACTTCCGATTCCCGACGATTC 353
Query 530 TCTGGACATCGAGTCTCTCCCGAAACAGAACGGTCCTCCGTGCTTGATTCGCTTCCGATT 589
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 354 TCTGGACATCGAGTCTCTCCCGAAACAGAACGATCCTCGGTGCTTGATTCGCTTCCGATT 413
Query 590 TTCAAATTCTCCTCCGTCACTCGCCGATCTAGCTCCATGAATTCCGGAGATTGCGCCGTT 649
|||||||||||||||||||||||||||||||| || | || ||||| |||||||||||
Sbjct 414 TTCAAATTCTCCTCCGTCACTCGCCGATCTAGTTCAACAAACTCCGGCGATTGCGCCGTC 473
Query 650 TGTTTGTCGAAATTCGAACCGGAGGATCAGCTCCGTCTTCTTCCTCTCTGTTGTCACGCT 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TGTTTGTCGAAATTCGAACCGGAGGATCAGCTCCGTCTTCTTCCTCTCTGTTGTCACGCT 533
Query 710 TTTCACGCCGATTGTATCGATATCTGGCTAGTCTCTAACCAGACTTGTCCTCTCTGTCGC 769
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 534 TTTCACGCCGATTGTATCGACATCTGGCTAGTCTCGAACCAGACTTGTCCTCTCTGTCGT 593
Query 770 TCTCCTCTCTTCGCTTCAGAATCTGATCTCATGAAGTCTCTCGCCGTCGTCGGCT-CAAA 828
|||||||||||||||||||| || ||||| ||||||||||||| || | ||| |||
Sbjct 594 TCTCCTCTCTTCGCTTCAGAGTCCGATCTAATGAAGTCTCTCGTCG--G-CGGAAACAA- 649
Query 829 CAACGGC---GGAGGAGAAAACAGCTTCCGTCTCGAAATCGGATCCATCAGCCGTCGTCG 885
|||| || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 CAACAGCAACGGTGGAGAAAACAGCTTCCGTCTCGAAATCGGATCCATCAGCCGTCGTC- 708
Query 886 TCAAACACCGATTCCAGAATCCGTTGAGCAGCATCGAACTTACTCAATCGGTTCGTTCGA 945
||||| || | ||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 709 --AAACA--GA----A---TCCGTAGAGCAGCACCGATCTTACTCAATCGGTTCGTTCGA 757
Query 946 TTACATAGTAGACGACGTAGATTCAGAAATCTCAGAGTCAAATTTCAACCGT-G--G-A- 1000
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 758 TTACATAGTAGACGACGTAGATTCAGAAATCTCAGAGTCAAATTTCAACCGTAGAAGCAT 817
Query 1001 A-----AA--CAGGAAGACGCGACTACAACAACTGCCACAGCAACGGCGGTTACGACTAA 1053
| || ||||||||||||||||||||||| | | | |||||||||||||| ||||
Sbjct 818 ATCGGCAAAACAGGAAGACGCGACTACAACAACAAC-A-A-CAACGGCGGTTACGTCTAA 874
Query 1054 TCCGACGTCGTTTGAAGCTAGTTTAGCGGCGGATATAGGTAACGATGGTTCTAGAAGCTG 1113
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 TCCGGCGTCGTTTGAAGCTAGTTTAGCGGCGGATATAGGTAACGATGGTTCTAGAAGCTG 934
Query 1114 GCTCAAGGATTACGTTGACAGACTCTCACGAGGTATATCGTCGCGTGCAATGTCGTTTAG 1173
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 GCTCAAGGATTACGTGGACAGACTCTCACGAGGTATATCGTCGCGTGCAATGTCGTTTAG 994
Query 1174 AAGCTCTGGTAGATTTTTTACTGGGAGTAGTCGTCGGAGTGAGGAATTGACGGTGATGGA 1233
||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||
Sbjct 995 AAGCTCTGGTAGATTTTTTACCGGGAGTAGCCGTCGGACTGAGGAATTGACGGTGATGGA 1054
Query 1234 TTTAGAAGCGAATCATGCCGGAGAAGAGATAAGTGAGCTTTTCCGGTGGCTCTCAGGGGT 1293
||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1055 TTTAGAAGCCAATCATGCCGGCGAAGAGATAAGTGAGCTTTTCCGGTGGCTTTCAGGGGT 1114
Query 1294 GTGAGTGACAGGTGAGTTGGTGACATTTGTTCATTCACTTGGaaaaaaaaaCAGAGCATT 1353
||||||||| ||||||| ||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1115 GTGAGTGACTGGTGAGTCGGTGAAATTTGTTCATTCGCTTGGAAAAAAAAACAGAGCATT 1174
Query 1354 ACTTTTGGTTTGTACATATAAACACTATTTGAAGTTCTTTGCTTCAATTACCG-Attttt 1412
|||||||||||||||||||||||||||| |||||||||||||||||||||| | ||| ||
Sbjct 1175 ACTTTTGGTTTGTACATATAAACACTATCTGAAGTTCTTTGCTTCAATTACGGGATTGTT 1234
Query 1413 tttttctttttCTGACGATATAACAGATGAATTCTCTAGTTATATATTATTACTTTTAAA 1472
|||| || |||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1235 TTTT-CT------GACGATATAACAGATGAATTCTCTAGTTATATATTA---CTTCTAA- 1283
Query 1473 TGGTCTATTTTCTCTT 1488
|| |||||||| ||||
Sbjct 1284 TGATCTATTTTTTCTT 1299
Score = 185 bits (100), Expect = 7e-46
Identities = 109/113 (96%), Gaps = 1/113 (1%)
Strand=Plus/Plus
Query 1 TTGAAAGCAAAGTGAAAAGCCAATTGATTTGATATAAC-TTTATAGAATTAAATATAGAC 59
||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||
Sbjct 1 TTGAAAGCAAAGTGAAAAGCCAATTGATTTGATTTAACTTTTATGGAATTAAATATAGAC 60
Query 60 AGTTTGAGTTGGTTCGATGACATTTATTTCTCTGCCTCTTTCCCAACGTCCCC 112
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 AGTTTGAGTTGGTTCAATGACATTTATTTCTCTGCCTCTTTCCCAACGTCCCC 113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55726028435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5