BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G60238.1

Length=679
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939057 jgi|Araly1|939057|scaffold_503248.1                        231    4e-60


> Ahg939057 jgi|Araly1|939057|scaffold_503248.1
Length=338

 Score =  231 bits (125),  Expect = 4e-60
 Identities = 160/176 (91%), Gaps = 6/176 (3%)
 Strand=Plus/Minus

Query  1    CAAGAGTCTTCGTCCGTACAGTTTTGATGGCGACGGAATATTTCGAATCAGG-CGATTTC  59
            |||||||||| |||||||| |||| |  |||| |||||| ||||||||| ||  ||||||
Sbjct  306  CAAGAGTCTTTGTCCGTACGGTTTCGCCGGCGGCGGAATCTTTCGAATC-GGAAGATTTC  248

Query  60   CGGAGAGATTATGATCTGGA-AATCGACGTTTTTCTCCACCTCTTGGA-TTATGTTTCAT  117
            ||||||||| ||||||||||  || ||||||||||||||||||||||| ||| |||||||
Sbjct  247  CGGAGAGATGATGATCTGGAGGAT-GACGTTTTTCTCCACCTCTTGGATTTA-GTTTCAT  190

Query  118  CAGACTCAATCTGTTCTTGCCTACACTCTTGGCTACAGAATGCCATGTCCCCTCTG  173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  189  CAGACTCAATCTGTTCTTGCCTACACTCTTGGCTACAGAATGCCATGTCCCCTCTG  134



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24932387718


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5