BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G60245.1

Length=592
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939059 jgi|Araly1|939059|scaffold_503250.1                        492    1e-138
  Ahg934128 jgi|Araly1|934128|scaffold_402116.1                        161    4e-39 


> Ahg939059 jgi|Araly1|939059|scaffold_503250.1
Length=322

 Score =  492 bits (266),  Expect = 1e-138
 Identities = 303/321 (94%), Gaps = 2/321 (1%)
 Strand=Plus/Plus

Query  38   CCTCCTTCCTGCTCTGAAAAATGGCGAAGAGAACGAAGAAGGTTGGAATCGTCGGCAAAT  97
            |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  4    CCTCCTGCTTGCTCTGAAAAATGGCGAAGAGAACGAAGAAGGTTGGAATCGTCGGCAAAT  63

Query  98   ACGGAACACGTTATGGTGCGAGTATCAGGAAGCAGATTAAGAAGATGGAGGTCAGCCAGC  157
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct  64   ACGGAACACGTTATGGTGCCAGTATCAGGAAGCAGATTAAGAAGATGGAGGTCAGTCAGC  123

Query  158  ACAGCAAGTACTTCTGTGAGTTCTGTGGCAAGTACGGAGTGAAGCGAAAGGCTGTTGGTA  217
            ||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct  124  ACAGCAAATACTTCTGTGAGTTCTGCGGCAAGTACGGCGTGAAGCGAAAGGCTGTTGGTA  183

Query  218  TCTGGGGTTGCAAGGATTGTGGCAAGGTCAAGGCAGGTGGTGCTTACACAATGAACACCG  277
            | ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  184  TTTGGGGATGCAAGGATTGTGGCAAGGTCAAGGCTGGTGGTGCTTACACAATGAACACCG  243

Query  278  CCAGTGCGGTCACTGTTAGAAGCACGATCAGAAGGTTGAGGGAGCAGATCGAGGGTTAAA  337
            ||||||| ||||| || |||||||| ||||| ||||||||||||||||||||||||||| 
Sbjct  244  CCAGTGCTGTCACCGTAAGAAGCACAATCAGGAGGTTGAGGGAGCAGATCGAGGGTTAA-  302

Query  338  AGTCTGCTGGCTTTTTATATT  358
             ||||||| ||||||||||||
Sbjct  303  -GTCTGCTCGCTTTTTATATT  322


> Ahg934128 jgi|Araly1|934128|scaffold_402116.1
Length=272

 Score =  161 bits (87),  Expect = 4e-39
 Identities = 150/180 (83%), Gaps = 6/180 (3%)
 Strand=Plus/Plus

Query  109  TATGGTGCGAGTATCAGGAAGCAGATTAAGAAGATGGAGGTCAGCCAGCACAGCAAGTAC  168
            |||||||| ||| | ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct  88   TATGGTGCCAGTCTTAGGAAGCAGATTAAGAAGATGGAGGTCAGTCAGCACAGCAAATAC  147

Query  169  TTCTGTGAGTTCTGTGGCAAGTACGGAGT--GAAGCGAAAGGCTGTTGGTATCTGGGGTT  226
            ||||||||||||||||||||||| |  ||  ||||  |||||||||| | || ||||| |
Sbjct  148  TTCTGTGAGTTCTGTGGCAAGTATGCTGTTAGAAG--AAAGGCTGTTCGAATTTGGGGAT  205

Query  227  GCAAGGATTGTGGCAAGGTCAAGGCAGGTGGTGCT--TACACAATGAACACCGCCAGTGC  284
            ||| ||| ||||| ||  | ||||| || |||||   ||||||||||| || || |||||
Sbjct  206  GCAGGGACTGTGGGAAACTTAAGGCTGGAGGTGCGCCTACACAATGAATACGGCTAGTGC  265



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21672374552


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5