BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60250.1
Length=1359
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486495 jgi|Araly1|486495|fgenesh2_kg.5__2487__AT3G60250.2 1683 0.0
Ahg483599 jgi|Araly1|483599|fgenesh2_kg.4__2659__AT2G44680.1 822 0.0
Ahg899732 jgi|Araly1|899732|Al_scaffold_0004_382 333 2e-90
> Ahg486495 jgi|Araly1|486495|fgenesh2_kg.5__2487__AT3G60250.2
Length=1249
Score = 1683 bits (911), Expect = 0.0
Identities = 1188/1307 (91%), Gaps = 78/1307 (6%)
Strand=Plus/Plus
Query 25 aaaagaagaaaaCCCTAGATTTCTCCGTCTCTCTAATTTCCTTTCTCTCTCAAGCTTCTC 84
|||| |||||||||||||||||||||| |||| ||||| || |||||||||||||||
Sbjct 2 AAAA-AAGAAAACCCTAGATTTCTCCG--TCTC---TTTCC-TT-TCTCTCAAGCTTCTC 53
Query 85 AGAAAGTCTGACACTTTCGAGAATCTAATCTCCAAATTTCTTGTCTTTTTGGAGAAGGAA 144
||||||||||||||||| |||||||||||||||||| || ||||| |||| | | | |
Sbjct 54 AGAAAGTCTGACACTTT-GAGAATCTAATCTCCAAAGTTATTGTC-TTTT-G-G-A-G-- 105
Query 145 TCGAATTATGTACAAGGAACGTAGTGGAGGAGGTGGTGGTGGGTCATCGAGATCAGAGAT 204
||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 106 --GAATTATGTACAAGGAACGTAGTGGAGGA---GGAGGTGGGTCATCGAGATCGGAGAT 160
Query 205 CCTCGGTGGAGCTATTGATCGGAAACGAATCAACGATGCACTCAATAAGAAACTAGAGAA 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 CCTCGGTGGAGCTATTGATCGGAAACGAATCAACGATGCACTCAATAAGAAACTAGAGAA 220
Query 265 ATCTTCAACTTCCACCACCACATCTAGGGTTTTCTCTTCTAAAGACAAAGATCCCTTTTC 324
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 ATCTTCAACTCCCACCACCACATCTAGGGTTTTCTCTTCTAAAGACAAAGATCCCTTTTC 280
Query 325 CTTCACATCTAC-T--A-----AAA-CTCAGCTTCCTGATGTGGAATCGGAAACTGATAG 375
||||||||||| | | ||| ||||||| || |||||||||||||||||||||||
Sbjct 281 ATTCACATCTACTTCCACTGCTAAATCTCAGCTCCCCGATGTGGAATCGGAAACTGATAG 340
Query 376 TGAAGGGTCTGATGTGAGTGGATCGGAGGGTGATGATACGTCGTGGATCTCTTGGTTTTG 435
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 341 TGAAGGGTCAGATGTGAGTGGATCGGAAGGTGATGATACATCGTGGATCTCTTGGTTTTG 400
Query 436 TAATTTGAGAGGGAATGATTTCTTCTGTGAAGTCGATGAAGATTATATTCAAGATGATTT 495
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 401 TAATTTGAGAGGGAATGATTTCTTCTGTGAAGTCGATGAAGACTATATTCAAGATGATTT 460
Query 496 CAATCTTTGTGGTTTAAGTGGTCAAGTCCCTTACTATGATTATGCACTTGATCTCATTTT 555
|||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 461 CAATCTTTGTGGATTAAGTGGTCAAGTTCCTTACTATGAGTATGCTCTTGATCTCATTTT 520
Query 556 AGATGTTG-ATGCTTCCAACAGTGAGATGTTTACTGATGAACAGCATGAAATGGTGGAAT 614
|||||| | || ||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 521 AGATGTGGAAT-CTTCCAACAGTGAGATGTTTACTGAAGAACAGAATGAAATGGTGGAAT 579
Query 615 CAGCTGCTGAGATGCTATATGGTCTTATTCATGTTCGTTACATTTTGACTACTAAAGGAA 674
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 CAGCTGCTGAAATGCTATATGGTCTTATTCATGTTCGTTACATTTTGACTACTAAAGGAA 639
Query 675 TGGCTGCAATGACTGAGAAGTACAAGAACTGTGATTTCGGGAGATGCCCGAGAGTTTTCT 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 TGGCTGCAATGACTGAGAAGTACAAGAACTGTGATTTCGGGAGATGCCCGAGAGTTTTCT 699
Query 735 GTTGCGGTCAGTCTTGTCTTCCAGTTGGACAATCCGATATCCCGAGATCGAGTACTGTGA 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 GTTGCGGTCAGTCTTGTCTTCCAGTTGGACAATCCGATATCCCGAGATCGAGTACTGTGA 759
Query 795 AGATATACTGCCCTAAATGCGAGGATATATCTTACCCGCGATCTAAATTCCAAGGCAATA 854
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 760 AGATATACTGCCCAAAATGCGAGGACATATCTTACCCGCGATCTAAATTCCAAGGCAATA 819
Query 855 TTGATGGAGCGTACTTTGGAACCACATTCCCTCACTTGTTCTTGATGACTTACGGGAACT 914
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 TTGATGGAGCATACTTTGGAACCACATTCCCTCACTTGTTCTTGATGACTTACGGGAACT 879
Query 915 TAAAGCCGCAGAAGCCTACTCAAAGCTATGTCCCAAAAATCTTTGGCTTCAAGGTACACA 974
||||||||||||| || ||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 880 TAAAGCCGCAGAAACCGACTCAAAACTACGTCCCAAAAATCTTTGGCTTCAAGGTACACA 939
Query 975 AACCATGATACTAGTGCTCTGCATTCTCAATGGTGATACATTTAGTGGCTCTGTAATTGC 1034
|||||||||||||||||||| | |||||||||||||||||| ||||||||| ||||||||
Sbjct 940 AACCATGATACTAGTGCTCTACTTTCTCAATGGTGATACATCTAGTGGCTCGGTAATTGC 999
Query 1035 ATCCGGATGAGCAAC---TGAAACGATAGCTGCGGT--GACTGGAGCATACATCAACCAT 1089
||||||||||||||| |||||||||||||||||| || ||||||||||||||| |||
Sbjct 1000 ATCCGGATGAGCAACAACTGAAACGATAGCTGCGGTTTGAATGGAGCATACATCAATCAT 1059
Query 1090 TGGGTTAGAGGATGAGAGCTGAAGTTGAAAGATGGAATCTTGAAAG-A--ATCTCATGAA 1146
||||| | || | ||| | | ||||||||| |||||| | ||||||||||
Sbjct 1060 TGGGTGA-AG--T------TGA--T--A--GATGGAATCCTGAAAGGAGGATCTCATGAA 1104
Query 1147 GTTCCAAGAAAACTTAGAAGTGCAACAGCCTGGCTCATTGGGGGAAAAGAACGACACACT 1206
|||||||||||||||| ||||||||||||||||||||||||||| |||||| |
Sbjct 1105 GTTCCAAGAAAACTTATAAGTGCAACAGCCTGGCTCATTGGGGGTAAAGAA--------T 1156
Query 1207 TGGGTCTTGTTGTTGTCTCCGAAAAGATTTTCCCCAGTTAGTTGGATTTTGTTTTGAACT 1266
| ||| | || |||||||||||||| ||||||||||||||||||| ||||
Sbjct 1157 -G--TCT---------C-CC-AAAAGATTTTCCCCTGTTAGTTGGATTTTGTTTT-AACT 1201
Query 1267 GTTGGATTATTATTCGTTTTTCTAATTTCATGTAAAACTCATAAATT 1313
|||| ||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1202 GTTGAATTATTATTTGTTTTCCTAATTTCATGTAAAACTCATAAATT 1248
> Ahg483599 jgi|Araly1|483599|fgenesh2_kg.4__2659__AT2G44680.1
Length=1355
Score = 822 bits (445), Expect = 0.0
Identities = 763/907 (84%), Gaps = 59/907 (7%)
Strand=Plus/Plus
Query 120 ATTTCTTGTCTTTTTG-GAGAA-GGAATCGAATTATGTACAAGGAACGTAGTGGAGGAGG 177
|||| || |||| ||| | ||| ||||||| ||||||||||||| || |||||||||||
Sbjct 163 ATTT-TT-TCTTCTTGAGGGAATCGAATCGAGTTATGTACAAGGATCGGAGTGGAGGAGG 220
Query 178 -----T-GGTGGT-G-GG-TCATCGAGATCAGAGATCCTCGGTGGAGCTATTGATCGGAA 228
| |||||| | || ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 221 AATAATGGGTGGTGGTGGATCATCGAGATCGGAGATCCTTGGTGGAGCTATTGATCGGAA 280
Query 229 ACGAATCAACGATGCACTCA-ATAAGA-AAC-TAGAGAAATCTTCAACTTCCACCACCAC 285
||||||||| ||||| | | | || | | | || ||||||||||| ||| | ||
Sbjct 281 ACGAATCAATGATGC-TTTAGACAA-ACATCTTA-AGAAATCTTCACCTT------CTAC 331
Query 286 ATCTAGGGTTTTCTCTTCTAAAGACAAAGATCCCTTTTCCTTC-ACATCTA---CTAAAA 341
||||||||||||| ||||||| ||||||||| |||| ||||| || |||| |||||
Sbjct 332 ATCTAGGGTTTTCACTTCTAAGGACAAAGAT-TCTTTCCCTTCTACTTCTACTGCTAAAT 390
Query 342 CTCAGCTTC---CT-G---A--TG-TG--GAATCGGAAACTGATAGTGAAGGGTCTGATG 389
||||||||| || | | || || ||||| ||||| ||||||||||| || ||||
Sbjct 391 CTCAGCTTCATTCTCGTTCACCTGATGTAGAATCTGAAACGGATAGTGAAGGATCAGATG 450
Query 390 TGAGTGGATCGGAGGGTGATGATACGTCGTGGATCTCTTGGTTTTGTAATTTGAGAGGGA 449
||||||| || || ||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 451 TGAGTGGTTCAGAAGGTGATGATACATCGTGGATCTCATGGTTTTGTAATTTGAGAGGGA 510
Query 450 ATGA-TTTCTTCTGTGAAGTCGATGAAGATTATATTCAAGATGATTTCAATCTTTGTGGT 508
|||| ||| ||||||||||| |||||||||||||| ||||||||||| ||||| |||||
Sbjct 511 ATGAGTTT-TTCTGTGAAGTAGATGAAGATTATATACAAGATGATTTTAATCTCTGTGGA 569
Query 509 TTAAGTGGTCAAGTCCCTTACTATGATTATGCACTTGATCTCATTTTAGATGTTGA-TGC 567
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 570 TTGAGTGGTCAAGTTCCTTACTATGATTATGCACTTGATCTCATTTTAGATGTTGAAT-C 628
Query 568 TTCCAACAGTGAGATGTTTACTGATGAACAGCATGAAATGGTGGAATCAGCTGCTGAGAT 627
|| || |||| ||||||||||| |||||| |||| |||||||||||||||||||||||
Sbjct 629 ATCAAATGGTGATATGTTTACTGAAGAACAGAATGAGATGGTGGAATCAGCTGCTGAGAT 688
Query 628 GCTATATGGTCTTATTCATGTTCGTTACATTTTGACTACTAAAGGAATGGCTGCAATGAC 687
| ||||||||||||||||||||||||| ||| | |||||||||||||||||||| ||||
Sbjct 689 GTTATATGGTCTTATTCATGTTCGTTATATTCTCACTACTAAAGGAATGGCTGCTATGA- 747
Query 688 TG-AGAAGTACAAGAACTGTGATTTCGGGAGATG-CCCGAGAGTTTTCTGTTGCGGTCAG 745
|| ||||||| ||||| | |||||||||||||| ||| |||||||||||||| || ||
Sbjct 748 TGGAGAAGTATAAGAATTACGATTTCGGGAGATGTCCC-AGAGTTTTCTGTTGTGGGCAA 806
Query 746 TCTTGTCTTCCAGTTGGACAATCCGATATCCCGAGATCGAGTACTGTGAAGATATACTGC 805
||||||||||| ||||| ||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 807 TCTTGTCTTCCGGTTGGGCAATCTGATATCCCGAGGTCGAGCACTGTGAAGATATACTGC 866
Query 806 CCTAAATGCGAGGATATAT-CTTACCCGCGATCTAAATTCCAAGGCAATATTGATGGAGC 864
|| |||||||||||||| | || ||||||||||||||| ||||||||| |||||||||||
Sbjct 867 CCAAAATGCGAGGATATTTACT-ACCCGCGATCTAAATACCAAGGCAACATTGATGGAGC 925
Query 865 GTACTTTGGAACCACATTCCCTCACTTGTT-CTTGATGACTTACGGGAACTT-AAAGCCG 922
||||||||||| || |||||||| ||||| || ||| | || |||||| | ||| ||
Sbjct 926 TTACTTTGGAACTACTTTCCCTCATTTGTTTCTC-ATGGCCTATGGGAACATGAAA-CCA 983
Query 923 CAGAAGCCTACTCAAAGCTATGTCCCAAAAATCTTTGGCTTCAAGGTACACAA-AC-CA- 979
|||||||| ||||| |||||| || || ||||||||||| ||||||||||| | ||
Sbjct 984 CAGAAGCCGGTTCAAAACTATGTTCCTAAGATCTTTGGCTTTAAGGTACACAACAAGCAA 1043
Query 980 TGATACT 986
|||||||
Sbjct 1044 TGATACT 1050
> Ahg899732 jgi|Araly1|899732|Al_scaffold_0004_382
Length=492
Score = 333 bits (180), Expect = 2e-90
Identities = 192/198 (97%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 356 GTGGAATCGGAAACTGATAGTGAAGGGTCTGATGTGAGTGGATCGGAGGGTGATGATACG 415
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 289 GTGGAATCGGAAACTGATAGTGAAGGGTCAGATGTGAGTGGATCGGAGGGTGATGATACA 348
Query 416 TCGTGGATCTCTTGGTTTTGTAATTTGAGAGGGAATGATTTCTTCTGTGAAGTCGATGAA 475
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 349 TCGTGGATCTCTTGGTTTTGTAATTTGAGAGGGAATGATTTCTTTTGTGAAGTCGATGAA 408
Query 476 GATTATATTCAAGATGATTTCAATCTTTGTGGTTTAAGTGGTCAAGTCCCTTACTATGAT 535
|||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||
Sbjct 409 GATTATATTCAAGATGATTTCAATCTTTGTGGATTAAGTGGTCAAGTTCCTGACTATGAT 468
Query 536 TATGCACTTGATCTCATT 553
||||||||||||||||||
Sbjct 469 TATGCACTTGATCTCATT 486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50855971278
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5