BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60260.1
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486497 jgi|Araly1|486497|fgenesh2_kg.5__2489__AT3G60260.1 1772 0.0
Ahg497408 jgi|Araly1|497408|fgenesh2_kg.364__1__AT2G44770.1 809 0.0
Ahg483606 jgi|Araly1|483606|fgenesh2_kg.4__2666__AT2G44770.1 809 0.0
> Ahg486497 jgi|Araly1|486497|fgenesh2_kg.5__2489__AT3G60260.1
Length=1283
Score = 1772 bits (959), Expect = 0.0
Identities = 1205/1313 (92%), Gaps = 60/1313 (5%)
Strand=Plus/Plus
Query 4 AAGCTTTTGATAGCGACTGAACAACACGCGCCAGATCCTTTAGTTGTAAAT--CC--CCA 59
|||||| ||||||||| ||||||| |||||||||||||| ||| | | ||| || |||
Sbjct 1 AAGCTTCTGATAGCGATTGAACAATACGCGCCAGATCCTATAG-T-T-AATCCCCGGCCA 57
Query 60 TTTTTATTTTCTTAAACCCAAAGA-A-A-G--aaaaaa-aaGAAGAGAAACGGCCGAATC 113
||||| |||||||||||||||||| | | | |||||| |||||||||||||||||
Sbjct 58 TTTTTGTTTTCTTAAACCCAAAGAGAGAGGAAAAAAAAGAAGAAGAGAAACGGCCG---- 113
Query 114 TTCATAAATTCCGCCATCTGTTAAGCTCAATCGCCGCCTAAACTCCGGCGACTCTCTCGA 173
|||||||| |||| |||||||||||||||| |||||||||||||||| |||||
Sbjct 114 -------ATTCCGCC-TCTGGTAAGCTCAATCGCCGCATAAACTCCGGCGACTCCCTCGA 165
Query 174 AGATATTTGGTGATTGAGGTGACTCGGAagagagtgagagagagagaTGGATGATAGAGG 233
||| ||||||||||||| | | | | | | | |||||| |||||||||||||||||
Sbjct 166 AGAGATTTGGTGATTGA-G-G--T--G-A-A-A---AGAGAGTGAGATGGATGATAGAGG 213
Query 234 AGGATCGTTCGTAGCAGTGAGAAGGATTTCACAAGGTCTAGAACGAGGAAGTGTTTATCA 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 AGGATCGTTCGTAGCAGTGAGAAGGATTTCACAAGGTCTAGAACGAGGAAGTGTTTATCA 273
Query 294 TTCTTCTTCTGCTGAGGTTGTAGCTGGATCGGCAGCGTGGTTAGGCCGTGGCCTTTCCTG 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 TTCTTCTTCTGCTGAGGTTGTAGCTGGATCGGCAGCGTGGTTAGGCCGTGGCCTTTCCTG 333
Query 354 TGTTTGTGTTCAGGGTAGAGACGGTGACCCTCGTCCTTCATTTGATCTAACGCCTGCTCA 413
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 334 TGTTTGTGTTCAGGGAAGAGACGGTGACCCCCGTCCTTCATTTGATCTAACGCCTGCTCA 393
Query 414 GGAGGAATGCCTGCAGAGGTTGCAAAGCCGCATTGATGTTGCTTATGACAGCTCAATACC 473
|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
Sbjct 394 GGAGGAATGCCTGCAGAGGTTGCAAAGCCGCATTGATGTTGCCTATGACCGCTCAATATC 453
Query 474 TCAGCATCAGGAAGCTCTAAAGGATCTTTGGAAACTTGCATTTCCTGAAGAAGAGCTACA 533
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 454 TCAGCATCAGGAAGCTCTGAAGGATCTTTGGAAACTTGCCTTTCCTGAAGAAGAGCTACA 513
Query 534 CGGAATTGTATCTGATCAGTGGAAGGAAATGGGTTGGCAGGGAAAAGATCCATCGACAGA 593
||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 514 CGGAATTGTATCTGAGCAGTGGAAGGAAATGGGTTGGCAAGGAAAAGATCCTTCAACAGA 573
Query 594 TTTTAGGGGTGGTGGTTTTATTTCTCTCGAAAACTTGTTGTACTTCGCTAGGA-AATTCC 652
|||||||||||||||||||||||| || ||||||||||||||||| ||||| | ||||||
Sbjct 574 TTTTAGGGGTGGTGGTTTTATTTCACTTGAAAACTTGTTGTACTTTGCTAG-ACAATTCC 632
Query 653 CGAAATCTTTCCACGGCCTTCTGCGGAAACAGGTTGGCGATCGTTCTGTGTGGGAATACC 712
||||||| ||||| | ||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 633 CGAAATCCTTCCAAGACCTTCTGCGGAAACAGGTTGGGGATCGTTCAGTGTGGGAATACC 692
Query 713 CCTTTGCTGTTGCTGGCATCAATATAACATTCATGCTCATCCAGATGCTTGACCTTGAAG 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 CCTTTGCTGTTGCTGGCATCAATATAACATTCATGCTCATCCAGATGCTTGACCTTGAAG 752
Query 773 CAGTGAAACCACGAAGTATTGTTGGGGAAACATTTCTAAGATTCCTTTCGGTGAACGAGT 832
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 753 CAGTGAAACCACGAAGTATTGTTGGGGAAACATTTCTGAGATTCCTTTCGGTGAATGAAT 812
Query 833 CTGCGTTTGACCTTCTTTATTGCATTGCCTTCAAGCTAATGGATCAGCAATGGCTATCCA 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 813 CTGCGTTTGACCTTCTTTATTGCATTGCCTTCAAGCTAATGGATCAGCAATGGCTCTCCA 872
Query 893 TGCGTGCTTCATACATGGAGTTTAACACTGTGATGAAATCAACAAGGCGGCAACTGGAGA 952
||| ||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 873 TGCATGCTTCATACATGGAGTTTAATACTGTAATGAAATCGACAAGGCGGCAACTGGAGA 932
Query 953 GAGAGATTATGATTGAAGACATTACAAGTCTCGAAGATTTGCCATCATACAGTCTTCTCA 1012
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 GAGAGATTATGGTTGAAGACATTACAAGTCTCGAAGATTTGCCATCATACAGTCTTCTCA 992
Query 1013 GTCAATAGCAAATAGCTTACCAAAAACTACTTTGTAAGTAGAAAGATCTAACAGCTCAGA 1072
|||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||| |
Sbjct 993 GTCAATAGCAAATAGCTTACCAAAGACTCCTTTGTAAGTAGAAAGATCTAACACCTCAAA 1052
Query 1073 AACCCT-ATATCAAAGCTAAAACAACAGCAGAGCAAGTAAGCAAGCAAAAAAGAAGACAA 1131
|||||| |||||||||||||||||||| |||||| || ||||||||||||||||||||
Sbjct 1053 AACCCTTATATCAAAGCTAAAACAACAACAGAGC---TA-GCAAGCAAAAAAGAAGACAA 1108
Query 1132 GGTTtc--tctctctctc----GCTCTTCACTCCATCTTCCTCGATATTAGTGTTGGTTC 1185
|||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1109 GGTTTCCCTCTCTCTCTCTCTCGCTCTTCACTCCATCTTCCTCTATATTAGTGTTGGTTC 1168
Query 1186 CATGAAATTTGGG----T---T-GTTATTTCTATGAAACCAGGGTCAGATTTTGTTTCTT 1237
|||||||||||| | | |||||||||||||||||||| |||||||||||||| |
Sbjct 1169 -ATGAAATTTGGGACACTGGGTTGTTATTTCTATGAAACCAGGTTCAGATTTTGTTTCCT 1227
Query 1238 ATGGGGTCAGATTTT-CTAACTTGTGGTGCTTGTAAAACGTTGTTGGTTAGTT 1289
|||||||||| |||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1228 ATGGGGTCAGTTTTTTCTAACTTGTGGTGCTTGTAAAACGTTGTTGGCTAGTT 1280
> Ahg497408 jgi|Araly1|497408|fgenesh2_kg.364__1__AT2G44770.1
Length=1452
Score = 809 bits (438), Expect = 0.0
Identities = 696/819 (85%), Gaps = 24/819 (3%)
Strand=Plus/Plus
Query 215 gagagaTGGATGATAGAGGAGGATCGTTCGTAGCAGTGAGAAGGATTTCACAAGGTCTAG 274
|||||||||||||||||| ||| ||||||||||| || || ||||||| || ||||| |
Sbjct 229 GAGAGATGGATGATAGAGAAGGCTCGTTCGTAGCTGTCAGGCGGATTTCTCAGGGTCTCG 288
Query 275 AACGAGGAAGTGTTTATC-ATTCTTCTTCTGCTGAGGTTGTAG-CTGGATCGGCAGCGTG 332
||||||| || ||||| | |||| || |||||||||| ||| | ||||||| ||||| ||
Sbjct 289 AACGAGGGAGCGTTTA-CAATTCATCATCTGCTGAGGCTGT-GCCTGGATCAGCAGCTTG 346
Query 333 GTTAGGCCGTGGCCTTTCCTGTGTTTGTGTTCAGGGTAGAGACGGTGACCCTCGTCCTTC 392
||||||||| || ||||| |||||||||| |||| | ||||| ||||| | | || |
Sbjct 347 GTTAGGCCGGGGTCTTTCTTGTGTTTGTGCTCAGAGAAGAGATAGTGACGCAAATTCTAC 406
Query 393 ATTTGATCTAACGCCTGCTCAGGAGGAATGCC-TGCAGAGGTTGCA-AAGCCGCATTGAT 450
||||||||||| |||||||||||||||| || |||||| ||||| || |||||||||
Sbjct 407 GTTTGATCTAACACCTGCTCAGGAGGAAT-CCTTGCAGAACTTGCAGAA-CCGCATTGAC 464
Query 451 GTTGCTTATGACAGCTCAATA-CCTCAGCATCAGGAAGCTCTAAAGGATCTTTGGAAACT 509
|| |||||||| ||| ||||| ||| |||||||||||| || | |||||| ||||||||
Sbjct 465 GTAGCTTATGATAGCACAATACCCT-TGCATCAGGAAGCGCTGAGGGATCTGTGGAAACT 523
Query 510 TGCATTTCCTGAAGAAGAGCTACACGGAATT-GTATCTGATCAGTGGAAGGAAATGGGTT 568
||| ||||||||||||||||| || || ||| ||||||| |||||||| || |||||||
Sbjct 524 TGCCTTTCCTGAAGAAGAGCTTCATGG-ATTAATATCTGAGCAGTGGAAAGAGATGGGTT 582
Query 569 GGCAGGGAAAAGATCCATCGACAGATTTTAGGGGTGGTGGTTTTATTTCTCTCGAAAACT 628
||||||| |||||||| || ||||||||||||||||||||| | || ||||| |||||||
Sbjct 583 GGCAGGGCAAAGATCCGTCAACAGATTTTAGGGGTGGTGGTCTCATATCTCTTGAAAACT 642
Query 629 TGTTGTACTTCGCTAGGAAATTCCCGAAATCTTTCCACGG-CCTTCTGCGGAAACAGGTT 687
|| ||||||| |||||||| || | |||||| ||||| || ||||||| |||||||||||
Sbjct 643 TGCTGTACTTTGCTAGGAACTTTCAGAAATCCTTCCA-GGACCTTCTGAGGAAACAGGTT 701
Query 688 GGCGATCGTTCTGTGTGGGAATACCCCTTTGCTGTTGCTGGCATCAA-TATAACATTCAT 746
|| ||||| |||||||||||||||||||||||||||||||| ||||| | ||||||||||
Sbjct 702 GGGGATCGGTCTGTGTGGGAATACCCCTTTGCTGTTGCTGGTATCAACT-TAACATTCAT 760
Query 747 GCTCATCCAGATGCTTGACCTTGAAGCAGTGAAACCACGAAGTATTGTTGGGGAAACATT 806
||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||| ||
Sbjct 761 GCTCATCCAAATGCTTGACCTTGAAGCAGTGAAACCACGAACAATTGTTGGGGCAACTTT 820
Query 807 TCT-AAGATTCCTTTCGGTGAACGAGTCTGCGTTTGACCTTCTTTATTGCATTGCCTTCA 865
||| ||| ||| |||| | |||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 821 TCTGAAGTTTC-TTTCTGAGAACGAATCTGCATTTGACCTTCTTTATTGCATTGCATTCA 879
Query 866 AGCTAATGGATCAGCAATGGCTATCCATGCGTGCTTCATACATGGAGTTTAACACTGTGA 925
|||||||||||||||||||||| || ||||| || |||||||||||||||||||| ||||
Sbjct 880 AGCTAATGGATCAGCAATGGCTTTCAATGCGCGCCTCATACATGGAGTTTAACACGGTGA 939
Query 926 TGAAATCAACAAGGCGGCAACTGGAGAGAGAGATTATGATTGAAGACATTA--CAAGTCT 983
|||||||||||||| | || ||||||||||| | ||| | |||||||| | || |||
Sbjct 940 TGAAATCAACAAGGAGACAGTTGGAGAGAGAGCTGATGCTGGAAGACATAATGCA--TCT 997
Query 984 CGAAGATTTGCCATCATACAG-TCTTCTCAGTCAATAGC 1021
|| || || || || ||| | |||||||| ||||||||
Sbjct 998 TGAGGACTTACCCTCCTAC-GCTCTTCTCAATCAATAGC 1035
> Ahg483606 jgi|Araly1|483606|fgenesh2_kg.4__2666__AT2G44770.1
Length=1450
Score = 809 bits (438), Expect = 0.0
Identities = 696/819 (85%), Gaps = 24/819 (3%)
Strand=Plus/Plus
Query 215 gagagaTGGATGATAGAGGAGGATCGTTCGTAGCAGTGAGAAGGATTTCACAAGGTCTAG 274
|||||||||||||||||| ||| ||||||||||| || || ||||||| || ||||| |
Sbjct 229 GAGAGATGGATGATAGAGAAGGCTCGTTCGTAGCTGTCAGGCGGATTTCTCAGGGTCTCG 288
Query 275 AACGAGGAAGTGTTTATC-ATTCTTCTTCTGCTGAGGTTGTAG-CTGGATCGGCAGCGTG 332
||||||| || ||||| | |||| || |||||||||| ||| | ||||||| ||||| ||
Sbjct 289 AACGAGGGAGCGTTTA-CAATTCATCATCTGCTGAGGCTGT-GCCTGGATCAGCAGCTTG 346
Query 333 GTTAGGCCGTGGCCTTTCCTGTGTTTGTGTTCAGGGTAGAGACGGTGACCCTCGTCCTTC 392
||||||||| || ||||| |||||||||| |||| | ||||| ||||| | | || |
Sbjct 347 GTTAGGCCGGGGTCTTTCTTGTGTTTGTGCTCAGAGAAGAGATAGTGACGCAAATTCTAC 406
Query 393 ATTTGATCTAACGCCTGCTCAGGAGGAATGCC-TGCAGAGGTTGCA-AAGCCGCATTGAT 450
||||||||||| |||||||||||||||| || |||||| ||||| || |||||||||
Sbjct 407 GTTTGATCTAACACCTGCTCAGGAGGAAT-CCTTGCAGAACTTGCAGAA-CCGCATTGAC 464
Query 451 GTTGCTTATGACAGCTCAATA-CCTCAGCATCAGGAAGCTCTAAAGGATCTTTGGAAACT 509
|| |||||||| ||| ||||| ||| |||||||||||| || | |||||| ||||||||
Sbjct 465 GTAGCTTATGATAGCACAATACCCT-TGCATCAGGAAGCGCTGAGGGATCTGTGGAAACT 523
Query 510 TGCATTTCCTGAAGAAGAGCTACACGGAATT-GTATCTGATCAGTGGAAGGAAATGGGTT 568
||| ||||||||||||||||| || || ||| ||||||| |||||||| || |||||||
Sbjct 524 TGCCTTTCCTGAAGAAGAGCTTCATGG-ATTAATATCTGAGCAGTGGAAAGAGATGGGTT 582
Query 569 GGCAGGGAAAAGATCCATCGACAGATTTTAGGGGTGGTGGTTTTATTTCTCTCGAAAACT 628
||||||| |||||||| || ||||||||||||||||||||| | || ||||| |||||||
Sbjct 583 GGCAGGGCAAAGATCCGTCAACAGATTTTAGGGGTGGTGGTCTCATATCTCTTGAAAACT 642
Query 629 TGTTGTACTTCGCTAGGAAATTCCCGAAATCTTTCCACGG-CCTTCTGCGGAAACAGGTT 687
|| ||||||| |||||||| || | |||||| ||||| || ||||||| |||||||||||
Sbjct 643 TGCTGTACTTTGCTAGGAACTTTCAGAAATCCTTCCA-GGACCTTCTGAGGAAACAGGTT 701
Query 688 GGCGATCGTTCTGTGTGGGAATACCCCTTTGCTGTTGCTGGCATCAA-TATAACATTCAT 746
|| ||||| |||||||||||||||||||||||||||||||| ||||| | ||||||||||
Sbjct 702 GGGGATCGGTCTGTGTGGGAATACCCCTTTGCTGTTGCTGGTATCAACT-TAACATTCAT 760
Query 747 GCTCATCCAGATGCTTGACCTTGAAGCAGTGAAACCACGAAGTATTGTTGGGGAAACATT 806
||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||| ||
Sbjct 761 GCTCATCCAAATGCTTGACCTTGAAGCAGTGAAACCACGAACAATTGTTGGGGCAACTTT 820
Query 807 TCT-AAGATTCCTTTCGGTGAACGAGTCTGCGTTTGACCTTCTTTATTGCATTGCCTTCA 865
||| ||| ||| |||| | |||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 821 TCTGAAGTTTC-TTTCTGAGAACGAATCTGCATTTGACCTTCTTTATTGCATTGCATTCA 879
Query 866 AGCTAATGGATCAGCAATGGCTATCCATGCGTGCTTCATACATGGAGTTTAACACTGTGA 925
|||||||||||||||||||||| || ||||| || |||||||||||||||||||| ||||
Sbjct 880 AGCTAATGGATCAGCAATGGCTTTCAATGCGCGCCTCATACATGGAGTTTAACACGGTGA 939
Query 926 TGAAATCAACAAGGCGGCAACTGGAGAGAGAGATTATGATTGAAGACATTA--CAAGTCT 983
|||||||||||||| | || ||||||||||| | ||| | |||||||| | || |||
Sbjct 940 TGAAATCAACAAGGAGACAGTTGGAGAGAGAGCTGATGCTGGAAGACATAATGCA--TCT 997
Query 984 CGAAGATTTGCCATCATACAG-TCTTCTCAGTCAATAGC 1021
|| || || || || ||| | |||||||| ||||||||
Sbjct 998 TGAGGACTTACCCTCCTAC-GCTCTTCTCAATCAATAGC 1035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49712283768
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5