BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G60270.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value Ahg898988 jgi|Araly1|898988|Al_scaffold_0005_2954 464 3e-130 Ahg486501 jgi|Araly1|486501|fgenesh2_kg.5__2493__AT3G60280.1 335 2e-91 > Ahg898988 jgi|Araly1|898988|Al_scaffold_0005_2954 Length=516 Score = 464 bits (251), Expect = 3e-130 Identities = 345/391 (88%), Gaps = 4/391 (1%) Strand=Plus/Plus Query 31 ctcctcctcctcctAGTGGCAGTCCCTGCCGTCTTTGCCGTGACTTTCCAGGTGGGAGAT 90 ||||||||| |||||| ||||||||||||||||||||||||||||||| |||| || ||| Sbjct 22 CTCCTCCTCTTCCTAGCGGCAGTCCCTGCCGTCTTTGCCGTGACTTTCAAGGTCGGCGAT 81 Query 91 AATGATGGTTGGACCATTGGTGTCGAGTACACG-AGTTGGGTTAGTGAAAAGACTTTCAG 149 |||| ||| ||| | ||||||||| |||||| | |||||| | || |||||||||||| Sbjct 82 AATGCTGGCTGGGCTGGTGGTGTCGATTACACGGA-TTGGGTCACTGGAAAGACTTTCAG 140 Query 150 AGTCGGTGACACTCTAGAGTTCAAATATGGTCCTTCGCACTCGGTGGCCGTGGTGAATAA 209 |||||||||||| ||||||||||||||||||| ||| || |||||| |||||||| |||| Sbjct 141 AGTCGGTGACACCCTAGAGTTCAAATATGGTCTTTCACATTCGGTGTCCGTGGTGGATAA 200 Query 210 AGCCGACTATGATGGCTGCGAAACTAGCAGACCGACGCAGAGTTTTTCTGACGGAGACAC 269 ||||||||| |||||||| ||||||||||||||||||||||| ||||| | ||||||||| Sbjct 201 AGCCGACTACGATGGCTGTGAAACTAGCAGACCGACGCAGAGCTTTTCAGGCGGAGACAC 260 Query 270 TAAGATCGATCTTACAAAAGTAGGTGCTATACACTTCCTTTGCCTTACTCCTGGTCACTG 329 |||||| ||||||||| |||||||||||||||||||||||||| || |||||||||||| Sbjct 261 TAAGATAAATCTTACAAGAGTAGGTGCTATACACTTCCTTTGCCCTAGTCCTGGTCACTG 320 Query 330 CAGCCTTGGCATGAAACTCGCCGT-ACAAGTACTTGCTGCCGTTTCATTAGAGCCTCCAC 388 | | |||||||||||||||||| || |||||||| |||||||||| || |||| ||| Sbjct 321 CCTCGGTGGCATGAAACTCGCCGTTACC-GTACTTGCCGCCGTTTCATCAGCGCCTTCAC 379 Query 389 CGTCTCCATCAGCTCCATCGCCGTCTCCATC 419 |||||||||||| ||||||||||||||||| Sbjct 380 CGTCTCCATCAGGGCCATCGCCGTCTCCATC 410 Score = 185 bits (100), Expect = 2e-46 Identities = 138/156 (88%), Gaps = 4/156 (3%) Strand=Plus/Plus Query 407 CGCCGTCTCCATCAGCTCCATCACCGTCTCCATCAGCTCCATCGCCGTCTCCATCGCCGG 466 |||||| | ||||||| || |||||||||||||||| |||||||||||||||||||||| Sbjct 357 CGCCGT-TTCATCAGCGCCTTCACCGTCTCCATCAGGGCCATCGCCGTCTCCATCGCCGG 415 Query 467 GAAACGCAGAAAACTTGAAAAATGCGGCGTCTAAG-GGA--ATCATGAGCTATGGAAAGA 523 |||||||||||||| ||||||| || | ||||||| | | || ||||||||||||| || Sbjct 416 GAAACGCAGAAAACGTGAAAAACGCCGAGTCTAAGAGAACCATGATGAGCTATGGAATGA 475 Query 524 TTGTGGTGACGATGGTGTTGATGTACGGTGTGCTTA 559 ||| |||||||||||||||||||||||||||| ||| Sbjct 476 TTGGGGTGACGATGGTGTTGATGTACGGTGTGATTA 511 > Ahg486501 jgi|Araly1|486501|fgenesh2_kg.5__2493__AT3G60280.1 Length=780 Score = 335 bits (181), Expect = 2e-91 Identities = 291/344 (85%), Gaps = 8/344 (2%) Strand=Plus/Plus Query 31 ctcctcctcctcctAGTGGCAGTCCCTGCCGTCTTTGCCGTGACTTTCCAGGTGGGAGAT 90 ||||||||| |||||| ||||||||||||||||||||||||||||||| |||| || ||| Sbjct 68 CTCCTCCTCTTCCTAGCGGCAGTCCCTGCCGTCTTTGCCGTGACTTTCAAGGTCGGCGAT 127 Query 91 AATGATGGTTGGACCATTGGTGTCGAGTACAC-GAGTTGGGTTAGTGAAAAGACTTTCAG 149 |||| ||| ||||| | |||| | || ||||| || |||||| | || |||||||||||| Sbjct 128 AATGCTGGCTGGACTAGTGGTATTGATTACACCGA-TTGGGTCACTGGAAAGACTTTCAG 186 Query 150 AGTCGGTGACACTCTAGAGTTCAAATATGGTCCTTCGCACTCGGTGGCCGTGGTGAATAA 209 |||||||||||| |||||||||| ||||| || ||| ||||||||| |||||||| |||| Sbjct 187 AGTCGGTGACACCCTAGAGTTCATATATGATCTTTCACACTCGGTGTCCGTGGTGGATAA 246 Query 210 AGCCGACTATGATGGCTGCGAAACTAGCAGACCGACGCAGAGTTT-TTCTGACGGAGACA 268 ||||| ||||||||||||||| | |||| || |||| |||| ||| ||| || ||||||| Sbjct 247 AGCCGGCTATGATGGCTGCGACAGTAGCGGAGCGACACAGAATTTCTTC-GATGGAGACA 305 Query 269 CTAAGATCGATCTTACAAAAGTAGGTGCTATACACTTCCTTTGCCTTACTCCTGGTCACT 328 |||||||||||||||||| ||| || | || ||||||||||||| |||| |||||||| Sbjct 306 CTAAGATCGATCTTACAACAGTTGGAACAATGCACTTCCTTTGCCCTACTTTTGGTCACT 365 Query 329 GCAGCCT--TGGCATGAAACTCGCCGTACAAGTACTTGCTGCCG 370 || | | |||||||||||||||||| | || ||||| |||| Sbjct 366 GC--CTTGATGGCATGAAACTCGCCGTTCCCGTCCTTGCCGCCG 407 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20604018060 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5