BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60270.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898988 jgi|Araly1|898988|Al_scaffold_0005_2954 464 3e-130
Ahg486501 jgi|Araly1|486501|fgenesh2_kg.5__2493__AT3G60280.1 335 2e-91
> Ahg898988 jgi|Araly1|898988|Al_scaffold_0005_2954
Length=516
Score = 464 bits (251), Expect = 3e-130
Identities = 345/391 (88%), Gaps = 4/391 (1%)
Strand=Plus/Plus
Query 31 ctcctcctcctcctAGTGGCAGTCCCTGCCGTCTTTGCCGTGACTTTCCAGGTGGGAGAT 90
||||||||| |||||| ||||||||||||||||||||||||||||||| |||| || |||
Sbjct 22 CTCCTCCTCTTCCTAGCGGCAGTCCCTGCCGTCTTTGCCGTGACTTTCAAGGTCGGCGAT 81
Query 91 AATGATGGTTGGACCATTGGTGTCGAGTACACG-AGTTGGGTTAGTGAAAAGACTTTCAG 149
|||| ||| ||| | ||||||||| |||||| | |||||| | || ||||||||||||
Sbjct 82 AATGCTGGCTGGGCTGGTGGTGTCGATTACACGGA-TTGGGTCACTGGAAAGACTTTCAG 140
Query 150 AGTCGGTGACACTCTAGAGTTCAAATATGGTCCTTCGCACTCGGTGGCCGTGGTGAATAA 209
|||||||||||| ||||||||||||||||||| ||| || |||||| |||||||| ||||
Sbjct 141 AGTCGGTGACACCCTAGAGTTCAAATATGGTCTTTCACATTCGGTGTCCGTGGTGGATAA 200
Query 210 AGCCGACTATGATGGCTGCGAAACTAGCAGACCGACGCAGAGTTTTTCTGACGGAGACAC 269
||||||||| |||||||| ||||||||||||||||||||||| ||||| | |||||||||
Sbjct 201 AGCCGACTACGATGGCTGTGAAACTAGCAGACCGACGCAGAGCTTTTCAGGCGGAGACAC 260
Query 270 TAAGATCGATCTTACAAAAGTAGGTGCTATACACTTCCTTTGCCTTACTCCTGGTCACTG 329
|||||| ||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 261 TAAGATAAATCTTACAAGAGTAGGTGCTATACACTTCCTTTGCCCTAGTCCTGGTCACTG 320
Query 330 CAGCCTTGGCATGAAACTCGCCGT-ACAAGTACTTGCTGCCGTTTCATTAGAGCCTCCAC 388
| | |||||||||||||||||| || |||||||| |||||||||| || |||| |||
Sbjct 321 CCTCGGTGGCATGAAACTCGCCGTTACC-GTACTTGCCGCCGTTTCATCAGCGCCTTCAC 379
Query 389 CGTCTCCATCAGCTCCATCGCCGTCTCCATC 419
|||||||||||| |||||||||||||||||
Sbjct 380 CGTCTCCATCAGGGCCATCGCCGTCTCCATC 410
Score = 185 bits (100), Expect = 2e-46
Identities = 138/156 (88%), Gaps = 4/156 (3%)
Strand=Plus/Plus
Query 407 CGCCGTCTCCATCAGCTCCATCACCGTCTCCATCAGCTCCATCGCCGTCTCCATCGCCGG 466
|||||| | ||||||| || |||||||||||||||| ||||||||||||||||||||||
Sbjct 357 CGCCGT-TTCATCAGCGCCTTCACCGTCTCCATCAGGGCCATCGCCGTCTCCATCGCCGG 415
Query 467 GAAACGCAGAAAACTTGAAAAATGCGGCGTCTAAG-GGA--ATCATGAGCTATGGAAAGA 523
|||||||||||||| ||||||| || | ||||||| | | || ||||||||||||| ||
Sbjct 416 GAAACGCAGAAAACGTGAAAAACGCCGAGTCTAAGAGAACCATGATGAGCTATGGAATGA 475
Query 524 TTGTGGTGACGATGGTGTTGATGTACGGTGTGCTTA 559
||| |||||||||||||||||||||||||||| |||
Sbjct 476 TTGGGGTGACGATGGTGTTGATGTACGGTGTGATTA 511
> Ahg486501 jgi|Araly1|486501|fgenesh2_kg.5__2493__AT3G60280.1
Length=780
Score = 335 bits (181), Expect = 2e-91
Identities = 291/344 (85%), Gaps = 8/344 (2%)
Strand=Plus/Plus
Query 31 ctcctcctcctcctAGTGGCAGTCCCTGCCGTCTTTGCCGTGACTTTCCAGGTGGGAGAT 90
||||||||| |||||| ||||||||||||||||||||||||||||||| |||| || |||
Sbjct 68 CTCCTCCTCTTCCTAGCGGCAGTCCCTGCCGTCTTTGCCGTGACTTTCAAGGTCGGCGAT 127
Query 91 AATGATGGTTGGACCATTGGTGTCGAGTACAC-GAGTTGGGTTAGTGAAAAGACTTTCAG 149
|||| ||| ||||| | |||| | || ||||| || |||||| | || ||||||||||||
Sbjct 128 AATGCTGGCTGGACTAGTGGTATTGATTACACCGA-TTGGGTCACTGGAAAGACTTTCAG 186
Query 150 AGTCGGTGACACTCTAGAGTTCAAATATGGTCCTTCGCACTCGGTGGCCGTGGTGAATAA 209
|||||||||||| |||||||||| ||||| || ||| ||||||||| |||||||| ||||
Sbjct 187 AGTCGGTGACACCCTAGAGTTCATATATGATCTTTCACACTCGGTGTCCGTGGTGGATAA 246
Query 210 AGCCGACTATGATGGCTGCGAAACTAGCAGACCGACGCAGAGTTT-TTCTGACGGAGACA 268
||||| ||||||||||||||| | |||| || |||| |||| ||| ||| || |||||||
Sbjct 247 AGCCGGCTATGATGGCTGCGACAGTAGCGGAGCGACACAGAATTTCTTC-GATGGAGACA 305
Query 269 CTAAGATCGATCTTACAAAAGTAGGTGCTATACACTTCCTTTGCCTTACTCCTGGTCACT 328
|||||||||||||||||| ||| || | || ||||||||||||| |||| ||||||||
Sbjct 306 CTAAGATCGATCTTACAACAGTTGGAACAATGCACTTCCTTTGCCCTACTTTTGGTCACT 365
Query 329 GCAGCCT--TGGCATGAAACTCGCCGTACAAGTACTTGCTGCCG 370
|| | | |||||||||||||||||| | || ||||| ||||
Sbjct 366 GC--CTTGATGGCATGAAACTCGCCGTTCCCGTCCTTGCCGCCG 407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20604018060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5