BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60280.1
Length=914
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486501 jgi|Araly1|486501|fgenesh2_kg.5__2493__AT3G60280.1 597 4e-170
Ahg898988 jgi|Araly1|898988|Al_scaffold_0005_2954 339 3e-92
> Ahg486501 jgi|Araly1|486501|fgenesh2_kg.5__2493__AT3G60280.1
Length=780
Score = 597 bits (323), Expect = 4e-170
Identities = 418/463 (90%), Gaps = 9/463 (2%)
Strand=Plus/Plus
Query 3 CTCTCTCTGTCTCTTTATCTATCTTCGT-ACATTATAT-A-T-AATGGGATCAACCGTGG 58
||||||||||||||| |||||||||| | ||||||||| | | |||||||||||||||||
Sbjct 1 CTCTCTCTGTCTCTTCATCTATCTTC-TGACATTATATAACTCAATGGGATCAACCGTGG 59
Query 59 CCGCCGCTCTCCTCCTCTTCCTAGCGGCAGTCCCTGCCGTCTTTGCCGCAACTTTCAAGG 118
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 60 CGGCCGCTCTCCTCCTCTTCCTAGCGGCAGTCCCTGCCGTCTTTGCCGTGACTTTCAAGG 119
Query 119 TCGGCGATATTTCTGGCTGGACCAGTAATCTTGATTACACGGTTTGGCTCACTGGAAAGA 178
||||||||| | |||||||||| ||| | |||||||||| | |||| ||||||||||||
Sbjct 120 TCGGCGATAATGCTGGCTGGACTAGTGGTATTGATTACACCGATTGGGTCACTGGAAAGA 179
Query 179 CTTTCAGAGTCGGTGACACTCTAGAGTTCGTATATGGTCTTTCACACTCGGTGTCCGTGG 238
||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||
Sbjct 180 CTTTCAGAGTCGGTGACACCCTAGAGTTCATATATGATCTTTCACACTCGGTGTCCGTGG 239
Query 239 TGGATAAAGCTGGCTACGATAACTGCGACAGTAGCGGAGCCACACAGAACTT-TGCCGAT 297
|||||||||| ||||| ||| |||||||||||||||||| |||||||| || | | |||
Sbjct 240 TGGATAAAGCCGGCTATGATGGCTGCGACAGTAGCGGAGCGACACAGAATTTCTTC-GAT 298
Query 298 GGAGACACTAAGATCGATCTTACCACAGTTGGAACAATGCACTTCCTTTGCCCTACTTTT 357
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 299 GGAGACACTAAGATCGATCTTACAACAGTTGGAACAATGCACTTCCTTTGCCCTACTTTT 358
Query 358 GGTCACTGCAA-GAACGGCATGAAACTCGCCGTTCCTGTCCTCGCCGCCGctccatctcc 416
||||||||| || |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 359 GGTCACTGCCTTGAT-GGCATGAAACTCGCCGTTCCCGTCCTTGCCGCCGCTCCATCTCC 417
Query 417 ttcgactccttcttcgcctccctccactccttcgactccttct 459
|| |||||||||||||| |||||| | |||||| |||| |||
Sbjct 418 GTCTACTCCTTCTTCGCCCCCCTCCCCACCTTCGCCTCCCTCT 460
Score = 368 bits (199), Expect = 4e-101
Identities = 282/321 (88%), Gaps = 10/321 (3%)
Strand=Plus/Plus
Query 502 cctccttcgcctccttctccatcgctcccccctagctctctgcctccATCTGCATCTCCG 561
||| ||||||| || || ||| | || | ||| ||||| ||||||||||||||| |||
Sbjct 425 CCTTCTTCGCCCCCCTCCCCA-C-CT-TCGCCTCCCTCTCCGCCTCCATCTGCATCCCCG 481
Query 562 CCGACCAATGGCACGCCGGATTCAGAGACATTGACGCCTCCGCCAG-CTCCATTGCCGCC 620
|| ||||||||||||||||||||||| |||||||||||||| || | |||||||| | ||
Sbjct 482 CCAACCAATGGCACGCCGGATTCAGACACATTGACGCCTCCACC-GACTCCATTGACACC 540
Query 621 TTCGCTGTCTCCAAACGCGGCATCTAAGGGAGTCATGAGCTATGGAATAATTGGAGTCAC 680
|| | |||||||||||| || |||| || ||||||||||||||||||||||||||||||
Sbjct 541 TT--C-GTCTCCAAACGCAGCGTCTACGGTAGTCATGAGCTATGGAATAATTGGAGTCAC 597
Query 681 GATGATATTGATGTACGCTGTTATGACCTAAATAACAGGGTGGAAACAGAGCATTGTTTT 740
||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||| ||||
Sbjct 598 GATGATATTGATGTACGGTGTTATGACATAAATTACAGGGTGGAAACAGAGCATTTTTTT 657
Query 741 -GCTCCATGTCTTTTTTGGTCGGCGGCCTTTGGAAATACTACACCACTACGTGCTCTTTT 799
|||| |||||||||||||||||||| |||||||| |||| ||||||||||||||||||
Sbjct 658 TGCTCGATGTCTTTTTTGGTCGGCGGTCTTTGGAACTACTTCACCACTACGTGCTCTTTA 717
Query 800 GTGTGTAACGGAAt-tttttt 819
|||||||||| ||| ||||||
Sbjct 718 GTGTGTAACGAAATCTTTTTT 738
> Ahg898988 jgi|Araly1|898988|Al_scaffold_0005_2954
Length=516
Score = 339 bits (183), Expect = 3e-92
Identities = 312/374 (83%), Gaps = 9/374 (2%)
Strand=Plus/Plus
Query 43 ATGGGATCAACCGTGGCCGCCGCTCTCCTCCTCTTCCTAGCGGCAGTCCCTGCCGTCTTT 102
||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGATTAACC---GCCGGCGCTCTCCTCCTCTTCCTAGCGGCAGTCCCTGCCGTCTTT 57
Query 103 GCCGCAACTTTCAAGGTCGGCGATATTTCTGGCTGGACCAGTAATCTTGATTACACGGTT 162
|||| ||||||||||||||||||| | |||||||| | || | | |||||||||| |
Sbjct 58 GCCGTGACTTTCAAGGTCGGCGATAATGCTGGCTGGGCTGGTGGTGTCGATTACACGGAT 117
Query 163 TGGCTCACTGGAAAGACTTTCAGAGTCGGTGACACTCTAGAGTTCGTATATGGTCTTTCA 222
||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 118 TGGGTCACTGGAAAGACTTTCAGAGTCGGTGACACCCTAGAGTTCAAATATGGTCTTTCA 177
Query 223 CACTCGGTGTCCGTGGTGGATAAAGCTGGCTACGATAACTGCGACAGTAGCGGAGCC-AC 281
|| ||||||||||||||||||||||| | ||||||| ||| || | |||| || || ||
Sbjct 178 CATTCGGTGTCCGTGGTGGATAAAGCCGACTACGATGGCTGTGAAACTAGCAGA-CCGAC 236
Query 282 ACAGAACTTTGCCGATGGAGACACTAAGATCGATCTTACCACAGTTGGAACAATGCACTT 341
|||| |||| | | |||||||||||||| ||||||| | ||| || | || |||||
Sbjct 237 GCAGAGCTTTTCAGGCGGAGACACTAAGATAAATCTTACAAGAGTAGGTGCTATACACTT 296
Query 342 CCTTTGCCCTACTTTTGGTCACTGCAA-GAACGGCATGAAACTCGCCGTT-CCTGTCCTC 399
||||||||||| | |||||||||| | |||||||||||||||||| || || ||
Sbjct 297 CCTTTGCCCTAGTCCTGGTCACTGCCTCGGT-GGCATGAAACTCGCCGTTACC-GTACTT 354
Query 400 GCCGCCGctccatc 413
||||||| | ||||
Sbjct 355 GCCGCCGTTTCATC 368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33891273213
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5