BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60290.1
Length=1251
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324483 jgi|Araly1|324483|fgenesh1_pm.C_scaffold_5002027 1480 0.0
Ahg322141 jgi|Araly1|322141|fgenesh1_pm.C_scaffold_4002198 992 0.0
> Ahg324483 jgi|Araly1|324483|fgenesh1_pm.C_scaffold_5002027
Length=1086
Score = 1480 bits (801), Expect = 0.0
Identities = 995/1089 (91%), Gaps = 12/1089 (1%)
Strand=Plus/Plus
Query 36 ATGGAGGAAACAAATAAGAGTGTGGTTAATGATTACTTTACCAGTGCTATGGAACTTACA 95
||||| ||||||| ||||||||||||| |||||| ||| ||||||||||||| ||||||
Sbjct 1 ATGGAAGAAACAATTAAGAGTGTGGTTGATGATTGCTTCACCAGTGCTATGGCACTTACC 60
Query 96 GAGTCAGGTGACCCTCACGTGCCTACCCGTTACATTCTTCCACCTTCACAACGACCAATG 155
|| ||||||| || ||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GACTCAGGTGTCCTTCATGTGCCTACTCGTTACATTCTTCCACCTTCACAACGACCAATG 120
Query 156 CTCGGTCCAAGCATTGGCACCAG-TACCATCAATCTTCCTGTCATTGATCTCTCCTTCTT 214
|||||| |||||||||||| | ||||||| ||||||||||||||||||||| ||||
Sbjct 121 CTCGGTTCAAGCATTGGCA-GTGACACCATCACGCTTCCTGTCATTGATCTCTCCCTCTT 179
Query 215 ACACGATCCTTTGCTTAGACTATGTGTCATCCATGAGATTGAATTGGCCTGCAAGGGATT 274
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 180 ACACGATCCTTTGCTTAGACGCTGTGTCATCCATGAGATTGAAATGGCCTGCAAGGGATT 239
Query 275 TGGTTTCTTTCAGGTTATAAACCATGGAATATCATCAGCAGTGGTGAAAGATGCACAAGA 334
||||||||||||| ||||||||||||||||||||||| |||||||||||||||| | |||
Sbjct 240 TGGTTTCTTTCAGATTATAAACCATGGAATATCATCATCAGTGGTGAAAGATGCGCTAGA 299
Query 335 TTCAGCTACAAGGTTCTTTGACTTACCTGCCGATGAGAAGATGCATCTGGTTTCTGATAA 394
| ||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||
Sbjct 300 TGCAGCTACAAGGTTCTTTGACTTACCTGTTGATGAGAAGATGCTTCTGGGTTCTGATAA 359
Query 395 TTTTCAGGA-GCCAGTAAGGTATGGTACCAGCATAAACCATTCAACAGACAGAGTTCATT 453
|||| | |||||||||||||| |||||| ||||||| |||||||||| ||||||||
Sbjct 360 CGTTCA-TACACCAGTAAGGTATGGCACCAGCTTAAACCACTCAACAGACAAAGTTCATT 418
Query 454 ACTGGAGAGATTTCATAAAACATTACTCCCATCCTCTCTCAAACTGGATCAATTTGTGGC 513
|||||||||||||||| |||||||||||||||||||| ||||| |||||| |||||||||
Sbjct 419 ACTGGAGAGATTTCATCAAACATTACTCCCATCCTCTTTCAAAGTGGATCGATTTGTGGC 478
Query 514 CTTCCAATCCTCCCTGCTACAAGGAAAAGGTGGGGAAATACGCAGAAGCAACGCATGTTT 573
| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 479 CATCCAACCCTCCATGCTACAAGGAAAAAGTGGGGAAATACGCAGAAGCAACGCATGTGC 538
Query 574 TACATAAGCAACTAATTGAAGCTATCTCAGAAAGTCTAGGACTGGAGAAAAATTACTTAC 633
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TGCATAAGCAACTAATTGAAGCTATCTCAGAAAGTCTAGGACTGGAGAAAAATTACTTAC 598
Query 634 AGGAAGAAATAGAAGAAGGCTCACAAGTCATGGCGGTAAACTGCTATCCAGCTTGTCCTG 693
| |||||||| ||||||| ||| |||||||||||||| |||||||||||||||||||| |
Sbjct 599 AAGAAGAAATTGAAGAAGACTCGCAAGTCATGGCGGTGAACTGCTATCCAGCTTGTCCCG 658
Query 694 AACCCGAGATTGCCTTGGGAATGCCACCACACTCGGACTATGGCTCGCTGACAATCTTAC 753
||||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||||||
Sbjct 659 AACCCGAAATTGCCTTGGGAATGCCACCACACTCGGACTTTGGCTCACTGACCATCTTAC 718
Query 754 TCCAGAGTAGCGAAGGGC-TGCAGATAAAGGACTGCAACAACAACTGGGTTTGTGTGCCG 812
||||||||||| | |||| ||||||||| |||||||||||| ||||||||||||||||||
Sbjct 719 TCCAGAGTAGCCA-GGGCCTGCAGATAATGGACTGCAACAAGAACTGGGTTTGTGTGCCG 777
Query 813 TATATTGAAGGAGCTCTGATAGTCCAGTTGGGAGATCAGGTAGAAGTGATGAGCAATGGC 872
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 778 TATATTGAAGGAGCTCTGATAGTCCAGTTGGGAGATCAAATAGAAGTCATGAGCAATGGC 837
Query 873 ATATACAAGAGTGTGGTTCATCGTGTAACAGTGAACAAAGATTACAAGCGGCTCTCTTTT 932
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 838 ATATACAAGAGTGTGGTTCATCGTGTAACAGTGAACAAAAATTACAAGCGGCTCTCTTTT 897
Query 933 GCAAGTCTTCACAGTCTACCTATGCACAAGAAAATAAGTCCAGCAACTC-AGCTCGTCAA 991
||||||||||||||| | ||| ||||||||||||||||||||||| || ||||||||||
Sbjct 898 GCAAGTCTTCACAGTATGCCTCTGCACAAGAAAATAAGTCCAGCA-CTTGAGCTCGTCAA 956
Query 992 TGAAAATAAACCAGCTGCATATGGAGAATTCAGCTTCAACGATTTTCTTGATTATATATC 1051
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 957 TGAAAATAAACCAGCTGCCTATGGAGAATTCAGCTTCAACGATTTTCTTGACTATATCTC 1016
Query 1052 CAGAAACGATATTACACAGA-AAAGATTCATTGATACACTCA-GAAAGAAAAACCTCTGA 1109
|| || ||||||||||| | ||||||||||||||||||||| ||| ||| || | ||
Sbjct 1017 TAGCAATGATATTACACA-ACAAAGATTCATTGATACACTCAAGAA-GAACAATTTATGC 1074
Query 1110 AGATGGTGT 1118
|||||||||
Sbjct 1075 AGATGGTGT 1083
> Ahg322141 jgi|Araly1|322141|fgenesh1_pm.C_scaffold_4002198
Length=1074
Score = 992 bits (537), Expect = 0.0
Identities = 905/1077 (84%), Gaps = 48/1077 (4%)
Strand=Plus/Plus
Query 36 ATGGAGGAAAC-AAATAAGAGTGTGGTTAATGATTAC-TTTACCAGTGCTATGGA-ACTT 92
||||||||||| ||| |||||| || || |||||| | ||||| ||||| || || ||||
Sbjct 1 ATGGAGGAAACGAAA-AAGAGTTTGCTTGATGATT-CTTTTACAAGTGCAAT-GACACTT 57
Query 93 A-CAGAGTCAGGTGACCCTCACGTGCCT-ACCCGTTACATTCTTCCACCTTCACAACGAC 150
| || | ||||||| ||||| || ||| | |||||| ||||||| ||||| ||| | |
Sbjct 58 ACCA-ATTCAGGTGTGCCTCAAGTCCCTGA-TCGTTACGTTCTTCCCCCTTCGCAAAGGC 115
Query 151 CAATGCTC--GGTCCAAGCATT-GGCACCAGT-ACCATCAA-TCTTCCTGTCATTGATCT 205
| | |||| ||| ||||| || ||||||| | | | ||| |||||||||||||||||
Sbjct 116 C-A-GCTCTTGGTTCAAGC-TTAGGCACCACTGA-GA-CAACACTTCCTGTCATTGATCT 170
Query 206 CTC-CTTCTTACACGATCCTTTGCTTAGACT-ATGTGTC-ATCCATGAGATT-GAATTGG 261
||| |||| || || | ||| |||||||| | | | | ||||| |||||| | | |||
Sbjct 171 CTCTCTTC-TAAACCAACCTCTGCTTAGA-TCCCGCG-CAATCCACGAGATTAGCA-TGG 226
Query 262 CCTGCAAGGGA-TTTGGTTTCTTTCAGGTTATAAACCATGGAATATCATCAGCAGTGGTG 320
||||||| ||| ||||||||||||||||||| ||||||||||||| ||||| |||||||
Sbjct 227 CCTGCAA-GGAGTTTGGTTTCTTTCAGGTTAGAAACCATGGAATACCATCATCAGTGGTT 285
Query 321 AAAGATGCAC-AAGATTCAGCTACA-AGGTTCTTTGACTTACCTGCCGATGAGAAGATGC 378
|||||||| | ||| |||| ||| | ||||||||||||||||| || ||||||||||
Sbjct 286 AAAGATGC-CTTTGATGCAGCAACACA-GTTCTTTGACTTACCTGTGGAGGAGAAGATGC 343
Query 379 ATCTGGTTTCTG-ATAATTTTCAGGAGCCAGTAAGGTATGGTACCAGCATAAACCATTCA 437
|||||| |||| | ||| |||| ||||||||||||||||| || ||| | ||||||||
Sbjct 344 TTCTGGTGTCTGCA-AATGTTCATGAGCCAGTAAGGTATGGCACAAGCCTTAACCATTCC 402
Query 438 ACAGACAGAGTTCATTACTGGAGAGATTTCATAAAACATTACTCCCATCCTCTCTCAAAC 497
|||||||||||||| ||||||||||||||||| || |||||||| ||||| ||||||||
Sbjct 403 ACAGACAGAGTTCACTACTGGAGAGATTTCATCAAGCATTACTCTCATCCACTCTCAAAG 462
Query 498 TGGATCAATTTGTGGCCTTCCAATCCTCCCTGCTACAAGGA-AAAGGTGGGGAAATACGC 556
||||||||| ||||||| || |||||||| ||||||||||| ||| ||||| || || ||
Sbjct 463 TGGATCAATATGTGGCCATCAAATCCTCCATGCTACAAGGATAAA-GTGGGCAAGTATGC 521
Query 557 AGAAGCAACGCATGTTTTACATAAGCAACTAATTGAAGCTATCTCAGAAAGTCTAGGACT 616
||| ||||| ||||| ||||||||||| |||| ||||||||||||||||| || |||||
Sbjct 522 AGAGGCAACACATGTGCTACATAAGCAATTAATAGAAGCTATCTCAGAAAGCCTGGGACT 581
Query 617 GGAGAAAAATTACTTACAGGAAGAAATAGAAGAAGGCTCACAAGTCATGGCGGTAAACTG 676
|||||||||||||||||| ||||| || |||| |||||||||||||||||| || |||||
Sbjct 582 GGAGAAAAATTACTTACAAGAAGAGATTGAAGGAGGCTCACAAGTCATGGCAGTGAACTG 641
Query 677 CTATCCAGCTTGTCCTGAACCCGAGATTGCCTTGGGAATGCCACCACACTCGGACTAT-G 735
|||||||| ||||| ||||| || || ||||||||||||||||||||||| |||| |
Sbjct 642 TTATCCAGCATGTCCGGAACCTGAAATCGCCTTGGGAATGCCACCACACTCAGACT-TCA 700
Query 736 GCTCGCTGACAATCTTACTCCAGAGTAGCGAAGGG-CTGCAGATAAAGGACTGCAACAAC 794
|||| ||||| |||||||| || |||||| |||| || ||||||| ||||||||||||
Sbjct 701 GCTCACTGACCATCTTACTTCAAAGTAGC-CAGGGACTCCAGATAATGGACTGCAACAAA 759
Query 795 AACTGGGTTTGTGTGCCGTATATTGAAGGAGCTCTGATAGTCCAGTTGGGAGATCAGGTA 854
||||||||||||||||||||||| ||||||||| ||||||| ||| ||||||||||||||
Sbjct 760 AACTGGGTTTGTGTGCCGTATATCGAAGGAGCTTTGATAGTTCAGCTGGGAGATCAGGTA 819
Query 855 GAAGTGATGAGCAATGGCATATACAAGAGTGTGGTTCATCGTGTAACAGTGAACAAAGAT 914
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 820 GAAGTGATGAGCAACGGCATATACAAGAGTGTCATTCATCGTGTAACAGTGAACACAGAT 879
Query 915 -TACAAGCGGCTCTCTTTTGCAAGTCTTCACAGTCTACCTATGCACAAGAAAATAAGTCC 973
| ||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 880 GT-CAAAAGGCTATCTTTTGCAAGTCTTCACAGTCTACCTCTGCACAAGAAAATAAGTCC 938
Query 974 AGCAACTCAGCTCGTCAATGAAAATAA-ACCAGCTGCATATGGAGAATTCAGCTTCAACG 1032
|||| | | |||||||| | ||| || || | |||| || ||||| || || |||||||
Sbjct 939 AGCACCGAAACTCGTCAACGCAAACAATAC-ACCTGCCTACGGAGAGTTTAGTTTCAACG 997
Query 1033 ATTTTCTTGATTATATATCCAGAAACGATATTACACA-GAAAAGATTCATTGATACA 1088
|||||||||| || || || || |||||| ||| ||| |||| ||||||||||||||
Sbjct 998 ATTTTCTTGACTACATCTCAAGCAACGATTTTATACAAGAAA-GATTCATTGATACA 1053
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46738696242
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5