BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60310.1
Length=2629
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486503 jgi|Araly1|486503|fgenesh2_kg.5__2495__AT3G60310.1 3360 0.0
> Ahg486503 jgi|Araly1|486503|fgenesh2_kg.5__2495__AT3G60310.1
Length=2541
Score = 3360 bits (1819), Expect = 0.0
Identities = 2135/2288 (93%), Gaps = 20/2288 (1%)
Strand=Plus/Plus
Query 56 CCGAGTATCTACATCGCCGGCGATTGATTCTGCTCATCTTTTCGATGCCCTCTCCGTCTG 115
||| || |||||||||||||||||||| ||||||| || ||||||| ||||||||||||
Sbjct 32 CCG-GTTTCTACATCGCCGGCGATTGAGTCTGCTCGGCTGTTCGATGTCCTCTCCGTCTG 90
Query 116 CAGTCGCCGATCTCTTGGCCGCTCTTGCTTACAGGCTTCAGAACGGAGATGAATTATTCG 175
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 91 CAGTCGCCGATCTCTTGGCCGCGCTTGCTTACAGGCTTCAGAACGGAGATCAATTATTC- 149
Query 176 AAGAAGAAGAAGAAGCGGAAGAGTCTACTTCTTCTATGGGACTAGCTATCTCGGAGCTTA 235
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 150 -----GAAGAAGAAGTGGAAGAGTCTACTTCCTCTATGGGACTAGCTATCTCGGAGCTTA 204
Query 236 ACCGATCTCTGACTCTGGATATCGGCTGCGAGGATTCTGGGGTCAGGGTTGTGGACGCAG 295
||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||
Sbjct 205 ACCGATCTCTGACTCTGGACATCGGCGGCGAGGATTCTGGGGTCAGGGTTCTGGACGCAT 264
Query 296 CGTTATCTATAATGTGCTTCAAGGCACCTCAGGTTTTTGATTCGGCAATTGAGTTTATGG 355
| |||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 265 CCTTATCTCTAATGTGCTTCAAGGCACCTCAGGTTTTTGATTCGGCGATTGAGTATATGG 324
Query 356 TACGAACAATTGTTTGCGCCTTATCATCTTCAAGCAATTGTAAGGTAATTAGGTATCGAA 415
| |||||| ||||||| |||||||||||||||||||||| ||||||| ||| ||||||||
Sbjct 325 TGCGAACACTTGTTTGTGCCTTATCATCTTCAAGCAATTTTAAGGTACTTAAGTATCGAA 384
Query 416 ACGAGGAAACATTACAGTTTGGGAGCTCCAATTTACCT-GGCTGCTCTGAAGAATTGATC 474
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 385 ACGAGGAAACATTACAGTTTGGGAGCTCCAATTTACCTCAG-TGCTCTGAAGAATTGATC 443
Query 475 GAAATCTCTAAGGATATTATTGAGAAACTGTGGGG-AAATGGAAGATTGGCTACATTGTT 533
||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||
Sbjct 444 GAAATCTCTAAGGATATTATTGATAAACTG-GGGGCAAATGGAAGATTGGCTACATTGTT 502
Query 534 ATTCGAAGCTGTTGTAAGGTCAGCAGCCTCAACATGTAAGATCAGCAGTTTCAACGCGCA 593
|||| |||||||||| || |||||||| |||||||||||||||| ||| ||||| || ||
Sbjct 503 ATTCCAAGCTGTTGTGAGATCAGCAGCTTCAACATGTAAGATCAACAGCTTCAATGCTCA 562
Query 594 TGGAAAGCTTATGGATGGAAGAAATAGGGCTGTCTCGAAGCTTCTTGCTTACTTACCGGG 653
| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
Sbjct 563 TACAAAGCTTATGGATGGAAGAAATAGGGCTGTTTCGAAGCTTCTTGTTTACTTACCGAG 622
Query 654 AGAATCATCTATAGAGAACCACAAGATACCTCTGAGGATTCTTTTCTGGTATCGAGATCC 713
|||||||||| |||||| |||| ||||||||||||||||||| |||||||||| ||||||
Sbjct 623 AGAATCATCTGTAGAGAGCCACGAGATACCTCTGAGGATTCTGTTCTGGTATCAAGATCC 682
Query 714 ATTGTCTTTGAAGGTAGATGTTTCCAGAATCTTGAAAGAGGTGGTGGAAAGGCCTTTCCT 773
|||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||
Sbjct 683 ATTGTCTTTGAAGGAAGATGTTTCCAGAATCTTGAAAGATGTTGTGGAAAGGCCTTTCCT 742
Query 774 TTGTGTAAAAAGGGAGCTTTTCGAGAGGGGGGAGTGGCGCGATATTGTCATCTGCCTAGC 833
|| | |||||| ||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 743 TTCTATAAAAAAGGAGCTTTTCGAGAGGGCAGAGTGGCGCGATATTGTCATCTGCTTAGC 802
Query 834 GA-TATCTCCTACTATGTTTATCAACACTAGATCACTCTTACATAAATGGCTTTTGCTTA 892
| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 803 -ACTATCTCCTACTATGTTTATCAACACTAGAGCCCTCTTACATAAATGGCTTTTGCTTA 861
Query 893 CGGGACTTGCTTCTGTTTTTGAAGTACTTGCTGGTTTGGCCTCTGCAATAATGGATACAA 952
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 862 CGGGACTTGCTTCTGTTTTTGAAGTACTTGCTGGTTTGGTCTCTGCAATAATGGATACAA 921
Query 953 TTTCAAGGCCATCGTTGTGGGGTATACCAATGGAACTAGCTTCCATGTTGCCATTTTCTG 1012
|||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 922 TTTCAAAACCATCGTTGTGGGGTATACCAATGGAACTAGCTTCCAGGTTACCATTTTCTG 981
Query 1013 ATACATACTTTCCTTTCCAGTGTCAATTTCTGAGAATCTTGGCGGGTCCTCTCAGTTCCA 1072
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 982 ATACATACTTTCCTTCCCAGTGTCAATTTCTGAGAATCTTGGCTGGTCCTCTCAGTTTCA 1041
Query 1073 AGTCCCTCCTAATGTTAGCTCATACTGTCAGTAAAGCGTCTGCTGTCCCTGGGCAACAAC 1132
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1042 AGTCCCTCCTAATGTTAGCTCATACTGTCAGTAAAGCATCTGCTGTCCCTAGGCAACAAC 1101
Query 1133 AACGGGATACTAATTGTAAGCCTACTCCAATAAAAGTTCAAGCATTAGATGACAAAACCG 1192
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1102 AACGGGATACTAATTGTAAGCCCACTCCAATAAAAGTTCAAGCATTAGATGACAAAACCG 1161
Query 1193 AATGGGCTTTGGCTATTAACTTCCCAGATTGGTTCTATTTTGCATCTGCTATGCTCTTCT 1252
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1162 AATGGGCTTTGGCTATTAACTTCCCAGATTGGTTCTATTTTGCTTCTGCTATGCTCTTCT 1221
Query 1253 CAGAAGGAAAGTCGTTTGAAAATATCCACCATATATGCGCTTCAAAAGTGGCTGACTGTA 1312
|||||||||| ||||||||||||||||| |||| |||| |||||||||||||||| ||||
Sbjct 1222 CAGAAGGAAATTCGTTTGAAAATATCCAACATAGATGCACTTCAAAAGTGGCTGATTGTA 1281
Query 1313 GACAAGTATGTGATGTAGAAGATCTCTCCATTGCTGCGGCTACATACATTTCTTGGATTC 1372
|||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1282 GACAAGCATGTGATGTAGAAGATCTCTCCATCGCTGCGGCTACATACATTGCTTGGATTC 1341
Query 1373 TAAACCCTGGAAGTGGAACCATTCAAG-AGTCAGTAAGTAAGTCTCTCATTAGAGTCTCA 1431
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1342 TAAACCCTGGAAGTGGAACCATTCAAGTA-TCAGTAAGTAAGTCTCTCATTAGAGTCTCA 1400
Query 1432 GAGATATGTATCAGTAAAAGTTGCGGCTCAGAAGCATATCGTACTGAGACTATAACTGGC 1491
|||||||||||| | || |||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1401 GAGATATGTATCGGCAACAGTTGCGGTTCAGAAGCACATCGTACTGAGACTATAACTGGC 1460
Query 1492 AAGAGAAAGAAACCAGATAGGCTCGTTTCTGGCAAAATAAA-TGCTTCCAGTATTGTGGA 1550
||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||
Sbjct 1461 AAGAGAAAGAAACCAGATAGGCTCGTTTCTGGCAAAATAAAGT-CTTCTAGTATTGTGGA 1519
Query 1551 AGACCTATTGAGAGAATTTGAAAACAATATCACCAATTCAGTTTCTTATGATTTGGATTC 1610
|||| |||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1520 AGACATATTGAGAGATTTTGAAAACAAAATCACCAATTCAGTTTCTTATGAATTGGATTC 1579
Query 1611 TCGGAAAACGCATCCATCTTTCAGCTCTGGCCTCCAAAACAATTTGTTGGTAAGAAGAGT 1670
||||||||| |||||||||||||||| |||||||||||||||||| || ||||||| |||
Sbjct 1580 TCGGAAAACACATCCATCTTTCAGCTGTGGCCTCCAAAACAATTTTTTAGTAAGAAAAGT 1639
Query 1671 TGTGGTTGGCGTTCTGTTTGGTTCTCCATATTCAGTAACAGATGAGGAGTATGAACTGGT 1730
||||||||| | || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1640 CGTGGTTGGCATACTTTTTGGTTCGCCATATTCAGTAACAGATGAGGAGTATGAACTGGT 1699
Query 1731 ATTACACTATGCAGCAACTGGGAAAATTCTTGACTTTAAGAAATCACGGAGTACCGGATT 1790
| | |||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1700 ACTGCACTATGCTGCAACTGGGAAAATTCTTGCCTTTAAGAAATCAAGGAGTACCGGATT 1759
Query 1791 CAAACAAGGAAAGAAATTCTCTAGAATATCTGCTTTACTGTCGAATGAAATTACCAAGGA 1850
||||||||||||| ||||||| ||||||||||||||||| |||||||||| ||||||||
Sbjct 1760 CAAACAAGGAAAGGGATTCTCTGGAATATCTGCTTTACTGCCGAATGAAATCACCAAGGA 1819
Query 1851 GGAGGCTACAGAAGGCACACTTCTTGTTTTCAACTTAACTGACACTTTGGAGAGTATGTG 1910
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1820 GGAGGCTATTGAAGGCACACTTCTTGTTTTCAACTTAACTGACACTTTGGAGAGTATGTG 1879
Query 1911 TGTATCAAGTTTTGAGGCCAAAGAGGACGCAGAGAAGTTTATTAACCATTTTAAGCTGAG 1970
||||||||||||||| || ||||||||| |||||||||||||||||||||||||| ||
Sbjct 1880 TGTATCAAGTTTTGAAGCTGGAGAGGACGCCGAGAAGTTTATTAACCATTTTAAGCTAAG 1939
Query 1971 ATCCAGCAAGTACTTGGTCAAATGCATAGATCGCCTGATACAACTTCACTGTACACAAGA 2030
||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1940 ATCCAGCAAATACTTGGTCAAATGTATAGATCGCCTGATACAACTTCACTGTACAGAAGA 1999
Query 2031 TGGAGATCCAATACTAAGTGACATTAATATCAGACTGCTGCAATGGACAGTAAAAGGACT 2090
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 2000 TGGAGATCCAATACTAAGTGACATTAATATCAGACTGCTACAATGGACAATAAAAGGACT 2059
Query 2091 AGAAGATCCACATTTTAACAAAGTTCTTGATGATATCGCTGCTAAGTTGGCCTGCATATT 2150
||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||| |||
Sbjct 2060 AGAAGATCCACATTTCAACAAAGTTCTTGATAATATCGCTGCTAAGTTGGACTGCAAATT 2119
Query 2151 CTCGCGCGTGTAACTGTCACCATATAGCCTGACTTGTGTCATATTTGGTGGTACAC-TAA 2209
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 2120 CTCGCCCGTGTAACTGTCACCATATAGCTTGACTTGTGTCATATTTGGTGGTACACATAA 2179
Query 2210 TTTTTGGGAAAATGGTGATCAAATGTGAAC-TGTTCAAAGCACTCGCACGACTGGTATGA 2268
||| |||||||||||||||||||| || || | |||||||| ||| |||||||||||||
Sbjct 2180 TTTATGGGAAAATGGTGATCAAATTTGGACAT-TTCAAAGCTCTCAAACGACTGGTATGA 2238
Query 2269 GGATATAACTGGTGTACAGCTCCACAACTGAAATTATTTGATCTGCCTGGACTGGACCAG 2328
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2239 AGATATAAATGATGTACAGCTCCACAACTGAAATTATTTGATCTGCCTGGACTGGACCAG 2298
Query 2329 AGAATTGT 2336
||||||||
Sbjct 2299 AGAATTGT 2306
Score = 200 bits (108), Expect = 4e-50
Identities = 152/171 (89%), Gaps = 11/171 (6%)
Strand=Plus/Plus
Query 2382 ATGGTGAGCCTTGGAACCACTTGATGCCTTTGCCATGCTCTCTTAATTCCACTTGATAAC 2441
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||
Sbjct 2307 ATGGTGAGCCTTGGAATCACTTGATGCTTTTGCCATGCTCTCTTAATTCCACTTGACAAC 2366
Query 2442 CACAAAACAATAAC-C-GGATTTCCTGCTGAAAAGGGGCATCTGAGTTTCGTCATCCCAA 2499
|||||||||| || | |||||||||||||||| ||| ||| ||||||||||||||||||
Sbjct 2367 TACAAAACAAT-ACGCTGGATTTCCTGCTGAAACGGGTCATGTGAGTTTCGTCATCCCAA 2425
Query 2500 GCCCCTGAG------AG--TTGCAAAAGGAGTATGATCCAGAGAAGTGAGT 2542
||||||||| || ||||||||||||| ||||||||||||||||||
Sbjct 2426 GCCCCTGAGGCCCTGAGAGTTGCAAAAGGAGTTTGATCCAGAGAAGTGAGT 2476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99148907735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5