BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60340.1
Length=1247
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486507 jgi|Araly1|486507|fgenesh2_kg.5__2499__AT3G60340.1 1953 0.0
> Ahg486507 jgi|Araly1|486507|fgenesh2_kg.5__2499__AT3G60340.1
Length=1221
Score = 1953 bits (1057), Expect = 0.0
Identities = 1168/1221 (96%), Gaps = 9/1221 (1%)
Strand=Plus/Plus
Query 35 TCGAGAGATTGATTATAAAATCCGGTCGGCGACGAGACTTACTTTCGCCGC-AA---A-- 88
||||||||||||||||||||||||||||| ||||| ||| ||||||||||| || |
Sbjct 1 TCGAGAGATTGATTATAAAATCCGGTCGGAGACGATACTAACTTTCGCCGCAAATTTACC 60
Query 89 A---TTTGTTCTCCGGAAGAGAATGGATTTTCTTAAGGCAACGATTATAGTTGCCCTAAT 145
| |||||||||| ||||| ||||| ||||||||||||| ||||||| |||||||||||
Sbjct 61 ATCTTTTGTTCTCCCGAAGAAAATGGCTTTTCTTAAGGCAGCGATTATTGTTGCCCTAAT 120
Query 146 TTGCAATTTCGCCTCACTGGCGTCTTCTGTTCCTTTCATAGTTCTGCATGGAATTGGGGA 205
||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTGCAATTTCGTCTCAGTGGCTTCTTCTGTTCCTTTCATAGTTCTGCATGGAATTGGGGA 180
Query 206 TAAATGCAGTAATGCAGGAGTGACACAATTCACAGAGCTTTTAAGCGATTGGTCTGGTTC 265
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 181 TAAATGCAGTAATGCAGGAGTGACACAATTTACAGAGCTTTTAAGTGATTGGTCTGGTTC 240
Query 266 TCAAGGATATTGCTTGGAGATTGGGAATGGCTCATGGGACTCATGGACTATGCCTCTCCT 325
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCAAGGCTATTGCATGGAGATTGGGAATGGCTCATGGGACTCATGGACTATGCCTCTCCT 300
Query 326 TGATCAGACATCAGTTGTTTGTGAGAAGGTGAAAAGTATGCCAGAGCTTAGTGACGGTTA 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGATCAGACATCAGTTGTTTGTGAGAAGGTGAAAAGTATGCCAGAGCTTAGTGACGGTTA 360
Query 386 CAGCATTGTGGGGCTTTCTCAGGGTAACATGATTGGTCGAGCTCTCATTGAGTTTTGCGA 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CAGCATTGTGGGGCTTTCTCAGGGTAACATGATTGGTCGAGCTCTCATTGAGTTTTGCGA 420
Query 446 TGGAGCACCACCTGTTAAGAGTTTTGTTTCGGTAGCGGGTCCTCATGCTGGCACTGCATC 505
|||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||
Sbjct 421 TGGAGCACCACCTGTTAAGAATTTTGTATCGGTAGCGGGTCCTCATGCTGGAACTGCATC 480
Query 506 GATTCCGTTCTGTGGTGCTACCTGGATTTGCATCATGTTGGACAGTATGATCAAAGCAGA 565
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GATTCCGTTCTGTGGCGCTACCTGGATTTGCATCATGTTGGACAGTATGATCAAAGCAGA 540
Query 566 GATCTATAGCGACTATATGCAGGAACATTTGGCTCCTAGCGGTTTTCTCAAAATCCCAAC 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GATCTATAGCGACTATATGCAGGAACATTTGGCTCCTAGCGGTTTTCTCAAAATCCCAAC 600
Query 626 TGACATAGCGGGTTACATGGAAGGCTGTAGGTTTCTCCCAAAGCTAAACAACGAACTTCC 685
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 601 TGACATAGCGGGTTACATGGAAGGCTGTAGGTTTCTACCAAAGCTAAACAACGAACTTCC 660
Query 686 AGTCAAAAACTCGACTTATAAGGAGAGGTTCTCGAGTTTGGAGAATCTTGTGCTTATTAT 745
||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 661 AGTAAAAAACTCGACTTATAAGGAGAGGTTCTCAAGCTTGGAGAATCTTGTGCTTATTAT 720
Query 746 GTTTGAGCATGACACAATATTGATACCTAAAGAAACCTCATGGTTTGGATATTATCCTGA 805
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 721 GTTTGAGCATGACACAATATTGATACCTAAAGAGACCTCATGGTTTGGATATTATCCTGA 780
Query 806 TGGGTCTTTCAAGACCATTCTTCCGCCGCAAGAGACCAAGCTATATACTGAAGACTGGAT 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGGGTCTTTCAAGACCATTCTTCCGCCGCAAGAGACCAAGCTATATACTGAAGACTGGAT 840
Query 866 TGGTTTGAGAACCTTAGATGAAGCTGGAAAAGTGAAGTTCGTTAACGTCTCTGGAAATCA 925
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 841 CGGTTTGAGAACATTAGATGAAGCTGGAAAGGTGAAGTTCGTTAACGTCTCTGGAAATCA 900
Query 926 TCTTCAGATATCTCATACAGACATGAAGAAGCATATAGTGCCATACCTCTGTGATAAATC 985
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 901 TCTTCAGATATCTCATACAGACATGAAGAAGCATATAGTGCCATACCTCTGTGATAAAGC 960
Query 986 ATCGTCGTCATCATCCACAACAATGGCAGTTTCCGGATCATCTTCCTCACACCAGTGGCT 1045
||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 961 ATCATCGTCATCATCCACAACAATGGCAGTTTCCGGGTCATCTTTCTCACACCAGTGGCT 1020
Query 1046 TCCAAGTGTAGGGAACATTATTATGGATCTTATTGGTCCAGAAGTGGATCAGCTTCAGCT 1105
|||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1021 TCCAAGTGTAGGGAACTTTATTATGGATCTGACTGGTCCAGAAGTGGATCAGCTTCAGCT 1080
Query 1106 TGTGCTACGTCATGTGTAAATCTGATGTCCTGTGTTGTTGTTTGTTCTCTTACTAAACAC 1165
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TGTGCTACGTCGTGTGTGAATCTGATGTCCTGTGTTGTTGTTTGTTCTCTTACTAAACAC 1140
Query 1166 GATCGTCTCGTGATATGTTTGTAACTTGAAGATAAAACAAGAAAACTGTTCCAAAATCCC 1225
||||| |||||||| |||||||||| || |||||||||||| || ||||||||||||||
Sbjct 1141 AATCGTGTCGTGATAAGTTTGTAACTAGATGATAAAACAAGAGAAGTGTTCCAAAATCCC 1200
Query 1226 TCTCAAAAAAGTTCTTATAGT 1246
||||||||| |||||||||||
Sbjct 1201 TCTCAAAAAGGTTCTTATAGT 1221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46586204574
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5