BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60350.1
Length=3343
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939070 jgi|Araly1|939070|scaffold_503261.1 4639 0.0
Ahg935440 jgi|Araly1|935440|scaffold_403428.1 2460 0.0
> Ahg939070 jgi|Araly1|939070|scaffold_503261.1
Length=2828
Score = 4639 bits (2512), Expect = 0.0
Identities = 2722/2825 (96%), Gaps = 8/2825 (0%)
Strand=Plus/Plus
Query 226 ATCTGATCAAGATATGAGTCGTAGGGTGAGGCAGAGAGTGGAGGATAATGGAAAGTATAA 285
|||||||||||||||||||||||||||| |||||||||||||||| || |||||| ||||
Sbjct 8 ATCTGATCAAGATATGAGTCGTAGGGTGCGGCAGAGAGTGGAGGAAAAAGGAAAGAATAA 67
Query 286 GGTTGATTCACCAAGTTATACTGTGATTGGAGTTGAGGATTTAGCACCTAAGGTTCAACA 345
||||||||| ||||||||| |||||||||||| |||||||||||||| |||||||||| |
Sbjct 68 GGTTGATTCTCCAAGTTATCCTGTGATTGGAGATGAGGATTTAGCACATAAGGTTCAAGA 127
Query 346 GTATGTGAATTGGACTAGTTTGCCTTATGACACAGTG-TTTCATTTGTTTACTCGATTGA 404
|||| | ||||||||||||||||||||||||| ||| ||| || |||||||||||||||
Sbjct 128 GTATCCGGATTGGACTAGTTTGCCTTATGACACTGTGCTTT-ATCTGTTTACTCGATTGA 186
Query 405 ATTATCGCGATAGAGCTAGCTTAGCCTCGACCTGTAGGACATGGAGAAGCCTTGGTGCTT 464
||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 187 ATTATCGTGATAGAGCTAGCTTAGCCTCTACCTGTAAGACATGGAGAAGCCTTGGTGCTT 246
Query 465 CTTCTTTTTTGTGGAGTTCATTGGATCTTCGAGCCCACAAATTTGATCTTTCAATGGCAG 524
|||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||| |
Sbjct 247 CTTCTTGTTTGTGGAGTTCATTGGATCTTCGAGCCCACAAGTTTGATCTTTCAGTGGCGG 306
Query 525 CTTCTCTTGCAACTAGGTGTGTTGATCTTCAGAAGATTAGGTTTCGTGGTGTTGACTCTG 584
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 307 CTTCTCTTGCAACTAGGTGTGCTGATCTTCAGAAGATTAGGTTTCGTGGTGTTGACTCTG 366
Query 585 CTGATGCCATAATTCATCTCAAAGCAAGGAGTCTGCTTGAAATTAGCGGCGACTATTGTA 644
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 367 CTGATGCCATAATTCATCTCAAAGCAAGGACTCTGCTTGAAATTAGCGGCGACTACTGTA 426
Query 645 GGAAGATTACAGATGCTACATTGTCTATGATTGCGGCACGCCATGAAGCTCTTGAGAGCC 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 GGAAGATTACAGATGCTACATTGTCTATGATTGCGGCACGCCATGAAGCTCTTGAGAGCC 486
Query 705 TCCAACTTGGACCAGATTTCTGTGAGAGGATCACTAGTGATGCTATAAGAGTTATAGCCT 764
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 487 TCCAACTTGGACCAGACTTCTGTGAGAAGATCACTAGTGATGCTATAAGAGTTATAGCCT 546
Query 765 TTTGCTGTCCGAAACT-AAAGAAGCTACGGGTTTCTGGCATGAGAGATGTTAGTTCTGAG 823
|||||||||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 547 TTTGCTGTCCAAAACTGAAA-AAGCTACGGGTTTCTGGCATGAGAGATGTTACTTCTGAG 605
Query 824 GCAATTGAATCTTTGGCCAAACATTGCCCACAGCTCAGTGATCTTGGATTCTTAGATTGC 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 GCAATTGAATCTTTGGCCAAACATTGCCCACAGCTCAGTGATCTTGGATTCTTAGATTGC 665
Query 884 CTGAACATCAACGAAGAAGCATTGGGAAAAGTGGTATCTCTTCGCTACCTCTCTGTTGCT 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 CTGAACATCAACGAAGAAGCATTGGGAAAAGTGGTATCTCTTCGCTACCTCTCTGTTGCT 725
Query 944 GGGACATCAAACATAAAGTGGAAAGTTGCATTAGAAAATTGGGAGAAGCTTCCAAAATTA 1003
||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 726 GGGACATCAAACATAAAGTGGAAAGTTGCATTAGATAATTGGGAGAAGCTTCCGAAGTTA 785
Query 1004 ATCGGTTTGGATGTCTCAAGAACCACCATTGACCATATTGCTGTGTCCAGGTTGTTGAAA 1063
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 786 ATCGGTTTGGATGTCTCAAGAACCACCATTGACCATATTGCAGTTTCCAGGTTGTTGAAA 845
Query 1064 TCATCGCAGAGCTTGAAAGTCTTGTGTGCTTTAAACTGCCCTTATCTCGAAGAGGATAAA 1123
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 846 TCATCGAAGAGCTTGAAAGTTTTGTGTGCTTTAAACTGCCCTTATCTCGAAGAGGATAAA 905
Query 1124 AGTTACAGCTCCAATAGATTCAAAGGAAAGGTCTTGCTTGCTGTGTTTACTGATACTTTT 1183
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 906 AGTTACAGCTCCAATAGATTCAAAGGAAAGGTCTTACTTGCTATGTTTACTGATACTTTT 965
Query 1184 GATGAGCTAGCTTCTATATTTGCCGATAACTCAAAGAAACCAAAGAATATATTTTCTTAC 1243
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 966 GATGAGCTAGCTTCTATATTTGCCGATAACTCAAAGAAACCAAAGGATATGTTTTCTTAC 1025
Query 1244 TGGAGAGATTTGATAAGAAAGGATAAAAGCATTGACGAAATAATGCTTTGGATTGAGTGG 1303
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1026 TGGAGAGATTTGATAAGAAAGGATAAAAGCACTGACGAAATAATGCTTTGGATTGAGTGG 1085
Query 1304 ATCATTTCTCATACACTTCTACGAATTGCAGAGAGCAGCAATTCACAAGGATTAAACGAT 1363
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1086 ATCATTTCTCATACGCTTCTACGAATTGCAGAGAGCAGCAATTCACCAGGATTAAACGAT 1145
Query 1364 TTCTGGCTGAATCAGGGAGCTACGTTGCTTCTCAGTTTAATGCAAAGCGCACAAGAGGAT 1423
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 TTCTGGCTGAATCAGGGGGCTACGTTGCTTCTCAGTTTAATGCAAAGCGCACAAGAGGAT 1205
Query 1424 GTCCAAGAGAGAGCAGCCACAGGACTTGCAACTTTCATCGTTGTTGATGATGAGAATGCT 1483
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1206 GTCCAAGAGAGAGCAGCCACAGGACTTGCGACTTTCATTGTTGTTGATGATGAGAATGCT 1265
Query 1484 AGCATAGACTGTGGAAGAGCCGAAGCTGTTATGCGAGATGGAGGGATCCGTCTTCTTCTA 1543
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 AGTATAGACTGTGGAAGAGCCGAAGCTGTTATGCGAGATGGAGGGATCCGTCTTCTTCTA 1325
Query 1544 GAACTTGCTAAATCTTGGCGAGAAGGTCTTCAGTCAGAAGCTGCAAAGGCTATTGCAAAC 1603
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1326 GAACTTGCTAAATCTTGGCGAGAAGGTCTTCAATCAGAAGCTGCAAAGGCTATTGCAAAC 1385
Query 1604 TTGTCGGTAAATGCTAAAGTTGCAAAGGCTGTTGCTGAAGAAGGAGGGATCAGTGTTCTT 1663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 TTGTCGGTAAATGCTAAAGTTGCAAAGGCTGTTGCTGAAGAAGGAGGGATCAGTGTTCTT 1445
Query 1664 GCTGATTTGGCAAAGTCTATGAATAGACTTGTGGCTGAAGAAGCTGCTGGTGGGCTATGG 1723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446 GCTGATTTGGCAAAGTCTATGAATAGACTTGTGGCTGAAGAAGCTGCTGGTGGGCTATGG 1505
Query 1724 AATCTCTCTGTTGGAGAAGAGCATAAGAACGCGATTGCTCAAGCTGGAGGAGTGAATGCG 1783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 AATCTCTCTGTTGGAGAAGAGCATAAGAACGCGATTGCTCAAGCTGGAGGAGTGAATGCG 1565
Query 1784 TTAGTTGATCTTATCTTTAGATGGCCACATGGTTGTGATGGAGTTCTGGAACGTGCTGCT 1843
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1566 TTAGTTGATCTTATCTTTAGATGGCCAAATGGTTGTGATGGAGTTCTGGAACGTGCTGCT 1625
Query 1844 GGGGCATTAGCAAATTTAGCAGCAGACGATAAATGCAGCATGGAAGTTGCAAGAGCAGGA 1903
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1626 GGGGCATTAGCAAATTTAGCAGCAGACGATAAATGCAGCACGGAAGTTGCAAGAGCAGGA 1685
Query 1904 GGTGTGCATGCCTTGGTGATGCTAGCTCGGAATTGCAAGTATGAAGGAGCACAAGAACAG 1963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1686 GGTGTGCATGCCTTGGTGATGCTAGCTCGGAATTGCAAGTATGAAGGAGCACAAGAACAG 1745
Query 1964 GCGGCTCGTGCTTTGGCTAATCTAGCTGCTCATGGTGATAGCAACGGTAATAATGCTGCT 2023
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1746 GCGGCTCGTGCTTTGGCTAATCTAGCTGCTCATGGTGATAGCAATGATAATAATGCTGCT 1805
Query 2024 GTTGGACAAGAGGCTGGTGCATTGGAAGCTCTTGTTCAGCTTACGCAATCACCTCATGAA 2083
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1806 GTTGGACAAGAGGCTGGTGCATTGGAAGCTCTTGTTCAGCTTACGCAATCGCCTCATGAA 1865
Query 2084 GGTGTTAAACAGGAAGCTGCTGGGGCTCTTTGGAATTTAGCATTTGATGACAAGAATCGA 2143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1866 GGTGTTAAACAGGAAGCTGCTGGGGCTCTTTGGAATTTAGCATTTGATGACAAGAATCGA 1925
Query 2144 GAATCCATTGCTGCATTTGGTGGTGTTGAAGCCTTGGTGGCACTTGCGAAGTCCTCTTCA 2203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1926 GAATCCATTGCTGCATTTGGTGGTGTTGAAGCCTTGGTGGCACTTGCGAAGTCCTCTTCA 1985
Query 2204 AATGCATCAACGGGTCTACAAGAGAGAGTAGCTGGTGCTCTCTGGGGACTATCTGTCTCA 2263
|||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1986 AATGCATCCACAGGTCTACAAGAGAGAGCAGCTGGTGCTCTCTGGGGACTATCTGTCTCA 2045
Query 2264 GAAGCAAACAGCATTGCAATTGGCCATGAAGGTGGTATTCCGCCTCTAATTGCTCTTGTA 2323
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 2046 GAAGCAAACAGCATTGCAATTGGCCATGAAGGTGGTATCCCGCCTCTAATTGCTCTTGCA 2105
Query 2324 CGATCTGAAGCTGAGGATGTACATGAAACTGCTGCAGGAGCTCTGTGGAATCTTTCTTTT 2383
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2106 CGATCCGAAGCTGAGGATGTACATGAAACTGCTGCAGGAGCTCTGTGGAATCTTTCTTTT 2165
Query 2384 AATCCTGGTAACGCTCTGCGGATTGTGGAGGAAGGGGGAGTTGTAGCACTTGTTCAGCTC 2443
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2166 AATCCTGGTAATGCTCTGCGGATTGTGGAGGAAGGGGGAGTTGTAGCACTTGTTCACCTC 2225
Query 2444 TGTTCGTCTTCTGTTTCCAAAATGGCTCGTTTTATGGCTGCATTAGCATTGGCATACATG 2503
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2226 TGTTCGTCTTCTGTTTCCAAAATGGCTCGTTTTATGGCCGCATTAGCATTGGCATACATG 2285
Query 2504 TTTGATGGAAGGATGGATGAATACGCGATGATAGGGACTTCATTGGAAAGTACATCTAAA 2563
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2286 TTTGATGGAAGGATGGATGAATACGCAATGATAGGGACTTCATTGGAAAGTACATCTAAA 2345
Query 2564 AGTGTTACCTTAAATGGTGCTAGAACAATGGCTCTTGATCAAATTAAAGCCTTCAT-TAA 2622
||||||||||||||||||||||||||| |||||||||| || || |||||||| || | |
Sbjct 2346 AGTGTTACCTTAAATGGTGCTAGAACATTGGCTCTTGAACACATCAAAGCCTTTATATCA 2405
Query 2623 AACTTTCATGGAACACCAAATCTTCTCAACTGGTGCTTTATCATCTGCTCCATCTATGTT 2682
| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 2406 A-CTTTCATGGAACACCAAATCTTTTCAGCTGGTGCTTTATCATCTGCTCCATCTATGTT 2464
Query 2683 AGCACAAGTCTCGGAGAGAGCTCGAATCCCAGAAGCTGGCCACTTGAGATGCAGTGGTTC 2742
| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2465 ATCACAAGTCTCAGAGAAAGCTCGAATCCCAGAAGCTGGCCACTTGAGATGCAGTGGTTC 2524
Query 2743 CGAAATTGGAAGATTTGTTACAATGTTGCGAAACCCTTGTCTTGTACTCAGAGCTTGTGC 2802
||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||
Sbjct 2525 CGAAATTGGAAGATTTGTTACAATGTTGCGAAATCCTTGTCTTACACTCAGATCTTGTGC 2584
Query 2803 AGCTTTTGCACTTCTTCAGTTTACAATACCTGAAAGCCGTCACGCAATGCATCACGCAAG 2862
||||||||| |||||||||||||||||||||| | | |||||||| ||||||||||| ||
Sbjct 2585 AGCTTTTGCGCTTCTTCAGTTTACAATACCTGGAGGTCGTCACGCGATGCATCACGCTAG 2644
Query 2863 CTTGATGCAGAATGCTGGAGAAGCAAGAGGCTTGCGTTCTGCAGCTGCAGCTGCGA-GTA 2921
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||| | |
Sbjct 2645 CTTGATGCAGAACGCTGGAGAAGCAAGAGTCTTGCGTTCTGCAGCTGCAGCTGCGAAG-A 2703
Query 2922 TGCCTCGTGAAGCCAAGATCTTTATGAAAATTGTGCTTCGCAATCTAGAGCATCAGCAGG 2981
||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||
Sbjct 2704 TGCCTCGTGAAGCCAAGATCTTTGTGAAAATTGTGCTTCGCAATCTCGAGCATCACCAGG 2763
Query 2982 CAGAATCTCCTGAAGGAATGAAAGTATCTTATAATAGGATTTGAGCCTTTTTCTTAGCCA 3041
|||||||| || |||||| |||||||||||| |||||||||||| ||||||||||||| |
Sbjct 2764 CAGAATCTTCTAAAGGAAAGAAAGTATCTTAGAATAGGATTTGATCCTTTTTCTTAGCAA 2823
Query 3042 ACCAT 3046
| |||
Sbjct 2824 ATCAT 2828
> Ahg935440 jgi|Araly1|935440|scaffold_403428.1
Length=2831
Score = 2460 bits (1332), Expect = 0.0
Identities = 2350/2833 (83%), Gaps = 104/2833 (4%)
Strand=Plus/Plus
Query 225 TATCTGATCAA-GA-TATGAGTCGTAGGGTGA-GGCA-GAGA---GTGGAGG-ATAATGG 276
||||||||||| || |||||||||||||| | || | || | | ||||| | || ||
Sbjct 5 TATCTGATCAAGGAGAATGAGTCGTAGGGT-ACGG-AGGAAATTGGAGGAGGAAAAAGGG 62
Query 277 AAAGTATAA-G--GTTGATTCACCAAGTTATACT--G--T-G-ATTGGAGTTGAGGA-TT 326
|||| |||| | |||| || ||||||||| || | | | ||| | | |||||| ||
Sbjct 63 AAAG-ATAAGGTTGTTGTTTTGCCAAGTTATCCTGAGACTAGCATTAGCGATGAGGATTT 121
Query 327 --TAGCACCTAAGGTTCAACA--G-TATG-TGAATTGGACTAGTTTGCCTTATGACACAG 380
|||| ||| || ||| || | | || || ||||||||||| |||||||||||||||
Sbjct 122 AGTAGCTCCTCAGCTTCTTCATGGTTTTGTTG-ATTGGACTAGTCTGCCTTATGACACAG 180
Query 381 TGT-TTCATTTGTTTACTCGATTGAATTATCGCGATAGAGCTAGCTTAGCCTCGACCTGT 439
| | |||| ||||||||| | ||||||||||||||| |||||||||| || || || |||
Sbjct 181 T-TCTTCAGTTGTTTACTTGTTTGAATTATCGCGATCGAGCTAGCTTGGCATCCACTTGT 239
Query 440 AGGACATGGAGAAGCCTTGGTGCTTCTTCTTTTTTGTGGAGTTCATTGGATCTTCGAGCC 499
| |||||||||| | |||||||||||||||| ||||||| |||||||||||||||| ||
Sbjct 240 AAGACATGGAGATGTCTTGGTGCTTCTTCTTGTTTGTGGGGTTCATTGGATCTTCG-TCC 298
Query 500 -CACAAATTTGAT-CTTTCAATGGCAGCTTCTCTTGCAACTAGGTGTGTTGATCTTCAGA 557
||||| |||||| | ||||||||||||||||||||| ||||||||||| ||||||| |
Sbjct 299 TCACAAGTTTGATGC-TTCAATGGCAGCTTCTCTTGCTTCTAGGTGTGTTAATCTTCATA 357
Query 558 AGATT-AGGTTTCGTGGTGTTGACTCTGCTGATGCCATAATTCATCTCAAAGCAAGGAGT 616
| || ||||||||||||||||| || |||||| || | || ||||||||||| |||| |
Sbjct 358 A-CTTAAGGTTTCGTGGTGTTGAATCAGCTGATTCCCTTATACATCTCAAAGCTAGGAAT 416
Query 617 CTGCTTGAAATTAGCGGCGACTATTGTAGGAAGATTACAGATGCTACATTGTCTATGATT 676
|| |||||| | |||||||||||||| |||||||| || ||||| |||||||| |||||
Sbjct 417 CTACTTGAAGTAAGCGGCGACTATTGCAGGAAGATAACTGATGCCACATTGTCAATGATC 476
Query 677 GCGGCACGCCATGAAGCTCTTGAGAGCCTCCAACTTGGACCAGA-TTTCTGTGAGAGGAT 735
| ||| || ||||| || |||||||| |||||||||||||| || ||| ||||||| |||
Sbjct 477 GTGGCGCGACATGAGGCACTTGAGAGTCTCCAACTTGGACCTGACTTT-TGTGAGAAGAT 535
Query 736 CACTAGTGATGCTA-TAAGAGTTATAGCCTTTTGCTGTCCGAAA-C-TAAAGAAGCTACG 792
|||||||||||||| ||| || | |||||||||| ||||| ||| | || | ||||| ||
Sbjct 536 CACTAGTGATGCTATTAA-AGCTGTAGCCTTTTGTTGTCC-AAAGCTTACA-AAGCTTCG 592
Query 793 GGTTTCTGGCATGAGAGATGTTAGTTCTGAGGCAATTGAATCTTTGGCCAAACATTGCCC 852
||||||| || |||||||||| |||||| || ||||| || ||||||||||||| ||
Sbjct 593 CCTTTCTGGGATAAGAGATGTTACTTCTGAAGCTGTTGAAGCTCTGGCCAAACATTGTCC 652
Query 853 ACAGCTCAGTGATCTTGGATTCTTAGATTGCCTGAACATCAACGAAGAAGCAT-TGGGAA 911
||||||||||||||| || ||||||||||| || ||||| |||| || || | ||||||
Sbjct 653 ACAGCTCAGTGATCTCGGGTTCTTAGATTGTCTAAACATTGACGAGGAGGC-TCTGGGAA 711
Query 912 AAGTGGTATCTCTTCGCTACCTCTCTGTTGCTGGGACATCAAACATAAAGTGG-AAAGTT 970
||||||||||| |||| ||||| |||||||||||||||||||||||||| ||| || |
Sbjct 712 AAGTGGTATCTGTTCGGTACCTTTCTGTTGCTGGGACATCAAACATAAAATGGTCAA-CT 770
Query 971 GCATTAGAA-AATTGGGAGAAGCTTCCAAAATTAATCGGTTTGGATGTCTCAAGAACC-A 1028
|||| | || | |||||| |||||||| ||||||| ||||||||||||||| || ||| |
Sbjct 771 GCATCA-AATAGTTGGGATAAGCTTCCGAAATTAACCGGTTTGGATGTCTCGAGGACCGA 829
Query 1029 CCATT-GACCATATTGCTGTGTCCAGGTTGTTGAAATCATCGCAGAGCTTGAAAGTCTTG 1087
|||| |||| | || || || ||||| |||| ||| ||||||||||||||||| |||
Sbjct 830 -CATTGGACC-CACCGCAGTTTCTAGGTTCTTGACATCGTCGCAGAGCTTGAAAGTATTG 887
Query 1088 TGTGCTTTAAACTGCCCTTAT-CTCGAAGAGGATAAAAGTTAC---AGCTCCAATAGATT 1143
|||||||||||||| | | | ||||||||||||| ||||| | |||||||| |||||
Sbjct 888 TGTGCTTTAAACTG-TCATGTCCTCGAAGAGGATACAAGTTTCTTTAGCTCCAACAGATT 946
Query 1144 CAAAGGAAAGGTCTTGCTTGCTGTGTTTACTGATACTTTT-GAT-GAGCTAGCTTCTATA 1201
||||||||| ||||| |||||| |||||||| || |||| ||| || || ||||| |||
Sbjct 947 CAAAGGAAAAGTCTTACTTGCTCTGTTTACTAAT-GTTTTCGATGGA-CTTGCTTCAATA 1004
Query 1202 TTTGCCGATAACTCAAAGAAACCAAAGAATATATTTTCTTACTGGAGAG-ATT--TGATA 1258
|| |||||||| |||||||||||||| |||| ||| | || ||||||| ||| ||| |
Sbjct 1005 TTCGCCGATAAGACAAAGAAACCAAAGGATATCTTTGCCTATTGGAGAGAATTGATGAAA 1064
Query 1259 A-GA--AAGGATAAAAGCATTGACGAAATAATGCTTTGGATTGAGTGGATCATTTCTCAT 1315
| | |||||||||| | |||| || | |||| |||||| || ||||| || ||||||
Sbjct 1065 ACAACCAAGGATAAAACCGTTGATGACTTTATGCATTGGATCGAATGGATTATCTCTCAT 1124
Query 1316 ACACTTCTACGAATTGCAGAGAGCAGCAATTCACAAGGATTAAACGATTTCTGGCTGAAT 1375
|| |||||||||| ||| |||| | ||| |||||||||| | |||||||||||||||
Sbjct 1125 ACGCTTCTACGAACTGC--AGAG-TGTAATCCACAAGGATTGGATGATTTCTGGCTGAAT 1181
Query 1376 CAGGGAGCTACGTTGCTT-CTCAGTTTAATGCAAAGCGCACAAGAGGATGTCCAAGAGAG 1434
|| ||||| | ||| || || | ||||||||||||| |||| || |||||||| |||||
Sbjct 1182 CAAGGAGCCGCATTG-TTGCTTAATTTAATGCAAAGCTCACAGGAAGATGTCCAGGAGAG 1240
Query 1435 AGCAGCCACAGGACTTGCAACTTTCATCGTTGTTGATGATGAGAATGCTAGCATAGACTG 1494
| |||| || || |||||||||||| | ||| | ||||||||||||||||| ||||||||
Sbjct 1241 ATCAGCTACTGGGCTTGCAACTTTCGTAGTTATCGATGATGAGAATGCTAGTATAGACTG 1300
Query 1495 TGGAAGAGCCGAAGCTGTTATGCGAGATGGAGGGATCCGTCTTCTTCTAGAACTTGCTAA 1554
||||||||| ||||| |||||| ||||||||| |||||||||||||| |||||||| ||
Sbjct 1301 TGGAAGAGCTGAAGCAGTTATGAAAGATGGAGGTATCCGTCTTCTTCTGGAACTTGCGAA 1360
Query 1555 ATCTTGGCGAGAAGGTCTTCAGTCAGAAGCTGCAAAGGCTATTGCAAACTTGTCGGTAAA 1614
||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1361 ATCATGGCGAGAAGGGCTTCAGTCAGAAGCTGCAAAGGCTATTGCAAATTTGTCGGTAAA 1420
Query 1615 TGCTAAAGTTGCAAAGGCTGTTGCTGAAGAAGGAGGGATCAGTGTTCTTGCTGATTTGGC 1674
|||||| ||||||||| ||||||||||||||||||| |||| |||| |||| ||||||
Sbjct 1421 TGCTAATGTTGCAAAGTCTGTTGCTGAAGAAGGAGGAATCAAAATTCTAGCTGGTTTGGC 1480
Query 1675 AAAGTCTATGAATAGACTTGTGGCTGAAGAAGCTGCTGGTGGGCTATGGAATCTCTCTGT 1734
|||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1481 AAAGTCAATGAACAGACTTGTGGCTGAGGAAGCTGCTGGTGGACTATGGAATCTCTCTGT 1540
Query 1735 TGGAGAAGAGCATAAGAACGCGATTGCTCAAGCTGGAGGAGTGAATGCGTTAGTTGATCT 1794
||||||||||||||||| || ||||||| ||||||||||| || || | || || ||
Sbjct 1541 CGGAGAAGAGCATAAGAATGCTATTGCTCTGGCTGGAGGAGTAAAGGCACTGGTCGACCT 1600
Query 1795 TATCTTTAGATGGCCACATGGTTGTGATGGAGTTCTGGAACGTGCTGCTGGGGCATTAGC 1854
||| |||||||||||| |||| |||||||||||| ||||||| ||||| || ||||||||
Sbjct 1601 TATATTTAGATGGCCAAATGGCTGTGATGGAGTTTTGGAACGAGCTGCAGGAGCATTAGC 1660
Query 1855 AAATTTAGCAGCAGACGATAAATGCAGCATGGAAGTTGCAAGAGCAGGAGGTGTGCATG- 1913
||| ||||||||||| |||||||||||||||||||| |||| ||| ||||| || ||||
Sbjct 1661 AAACTTAGCAGCAGATGATAAATGCAGCATGGAAGTCGCAACAGCGGGAGGCGTACATGC 1720
Query 1914 CCTTGGTGATGCTAGCTCGGAATTGCAAGTATGAAGGAGCACAAGAACAGGCGGCTCGTG 1973
|||| || ||| ||||||| ||||||||||| || |||| ||||||||||| |||||||
Sbjct 1721 CCTT-GTTATGTTAGCTCGTAATTGCAAGTACGAGGGAGTGCAAGAACAGGCTGCTCGTG 1779
Query 1974 CTTTGGCTAATCTAGCTGCTCATGGTGATAGCAACGGTAATAATGCTGCTGTTGGACAAG 2033
|||| |||||| | ||||||||||| ||||||||| |||||||||||| ||||||||||
Sbjct 1780 CTTTAGCTAATTTGGCTGCTCATGGAGATAGCAACAATAATAATGCTGCGGTTGGACAAG 1839
Query 2034 AGGCTGGTGCATTGGAAGCTCTTGTTCAGCTTACGCAATCACCTCATGAAGGTGTTAAAC 2093
| || |||||||| ||||||||||| || ||||| ||||| | ||||||||| |||| ||
Sbjct 1840 AAGCAGGTGCATTAGAAGCTCTTGTCCAACTTACACAATCGCTTCATGAAGGAGTTAGAC 1899
Query 2094 AGGAAGCTGCTGGGGCTCTTTGGAATTTAG-CATTTGATGACAAGAATCGAGAATCCATT 2152
| ||||||||||| ||||| |||||||| | | |||||||| |||||||||||||| ||
Sbjct 1900 AAGAAGCTGCTGGTGCTCTATGGAATTT-GTCGTTTGATGATAAGAATCGAGAATCTATC 1958
Query 2153 GCTGCATTTGGTGGTGTTGAAGCCTTGGTGGCACTTGCGAAGTCCTCTTCAAATGCATCA 2212
|||| | ||||||||||||||| ||||||| || ||| |||| | ||||||||||||
Sbjct 1959 GCTGTAGCTGGTGGTGTTGAAGCTTTGGTGGTGCTCGCGCAGTCGTGTTCAAATGCATCG 2018
Query 2213 ACGGGTCTACAAGAGAGAG-TAGCTGGTGCTCTCTGGGGACTATCTGTCTCAGAAGCAAA 2271
|| ||||| ||||| |||| | |||||||| || |||||| |||| || |||||||||||
Sbjct 2019 ACAGGTCTTCAAGAAAGAGCT-GCTGGTGCGCTTTGGGGATTATCGGTGTCAGAAGCAAA 2077
Query 2272 CAGCATTGCAATTGGCCATGAAGGTGGTATTCCGCCTCTAATTGCTCTTGTACGATCTGA 2331
|||| |||| ||||| | ||||||||| |||| ||||||||||| |||| ||| |||||
Sbjct 2078 CAGCGTTGCGATTGGACGTGAAGGTGGGGTTCCACCTCTAATTGCACTTGCACGGTCTGA 2137
Query 2332 AGCTGAGGATGTACATGAAACTGCTGCAGGAGCTCTGTGGAATCTTTCTTTTAATCCTGG 2391
||| |||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||
Sbjct 2138 AGCCGAGGATGTACATGAAACTGCAGCAGGAGCTCTATGGAATCTTGCTTTTAATCCTGG 2197
Query 2392 TAACGCTCTGCGGATTGTGGAGGAAGGGGGAGTTGTAGCACTTGTTCAGC-TCTGTTCGT 2450
||| || || || ||||| |||||||| |||||| ||| |||||||| | | |||| ||
Sbjct 2198 TAATGCACTCCGCATTGTTGAGGAAGGAGGAGTTCCAGCTCTTGTTCA-CTTGTGTTTGT 2256
Query 2451 CTTCTGTTTCCAAAATGGCTCGTTTTATGGCTGCATTAGCATTGGCATACATGTTTGATG 2510
||||||| || ||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 2257 CTTCTGTCTCAAAAATGGCTCGATTTATGGCTGCATTGGCTTTGGCATACATGTTTGATG 2316
Query 2511 GAAGGATGGATGAATACGC---GATGATAGGGACTTCAT--TG-GAAAGTACATCTAAAA 2564
||||||||||||||||||| ||||||||| ||||| | | || || ||||||||||
Sbjct 2317 GAAGGATGGATGAATACGCTTTGATGATAGGAACTTCTTCATCAGAGAGCACATCTAAAA 2376
Query 2565 GTGTTACCTTAAATGGTGCTAGAA-CAATGGCTCTTGATCAAATTAAAGCCTTCATTAAA 2623
| ||| |||| |||| || |||| || |||||||| | || ||| |||| || | |
Sbjct 2377 GCATTAGCTTAGATGGGGCAAGAAACA-TGGCTCTTAAACACATTGAAGCTTTTGTCCTA 2435
Query 2624 ACTTTCATGGAACAC-CAAATCTTCTCAA-CTGGTGCT-TTATCATCTGCTCC-ATCTAT 2679
||||| || || | | || ||||| | || || || | || || ||| | || | ||||
Sbjct 2436 ACTTTTATAGATC-CTCACATCTT-TGAATCTCCTGTTGTT-TCTTCTACCCCTA-CTAT 2491
Query 2680 GTTAGCACAAGTCTCGGAGAGAGCTCGAATCCCAGAAGCTGGCCACTTGAGATGCAGTGG 2739
| | ||||||||| | ||||||||||| || | |||||||||||||||||||||||||||
Sbjct 2492 GCTGGCACAAGTCACAGAGAGAGCTCGCATACAAGAAGCTGGCCACTTGAGATGCAGTGG 2551
Query 2740 TTCCGAAATTGGAAGATTTGTTACAATGTTGCGAAACCCTTGTCTT-GT-ACTCAGAGCT 2797
| | ||||||||||||||||| ||||||||||| || ||| | || | ||||| |||
Sbjct 2552 TGCTGAAATTGGAAGATTTGTAACAATGTTGCGGAATCCT-GA-TTCGACACTCAAAGCA 2609
Query 2798 TGTGCAGCTTTTGCACTTCTTCAGTTTACAATACCTGAAAGCCGTCACGCAATGCATCAC 2857
||||| || ||||| |||||||||||||||||||| | | ||||| ||||||||||||
Sbjct 2610 TGTGCTGCGTTTGCGCTTCTTCAGTTTACAATACCGGGTGGTCGTCATGCAATGCATCAC 2669
Query 2858 GCAAGCTTGATGCAGAATGCTGGAGAAGCAAGAGG-CTTGCGTTCTGCAGCTGCAGCTGC 2916
| |||| |||||||||||| |||||| | ||| ||| |||||||||||||| ||||
Sbjct 2670 GTAAGCCTGATGCAGAATGGAGGAGAATCGAGATTTCTT-CGTTCTGCAGCTGCTTCTGC 2728
Query 2917 GAGTATGCCTCGTGAAGCCAAGATCTTTATGAAAATTGTGCTTCGCAATCTAGAGCATCA 2976
| | |||||||||||| |||||||||| ||||||| | || |||||||| ||||||||
Sbjct 2729 AAAAACGCCTCGTGAAGCTAAGATCTTTACGAAAATTATCCTACGCAATCTCGAGCATCA 2788
Query 2977 GCAGGCAGAATCT 2989
||||||||||||
Sbjct 2789 CCAGGCAGAATCT 2801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126198912068
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5