BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60360.1
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486509 jgi|Araly1|486509|fgenesh2_kg.5__2501__AT3G60360.1 1389 0.0
> Ahg486509 jgi|Araly1|486509|fgenesh2_kg.5__2501__AT3G60360.1
Length=1032
Score = 1389 bits (752), Expect = 0.0
Identities = 875/933 (94%), Gaps = 14/933 (2%)
Strand=Plus/Plus
Query 161 CCCTGTATTTCACCGTCAAGAGCAAATCCAACATGTCGTCGCTGCGTAATGCTATTCCAC 220
||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 108 CCCTGTATTTCACCGTCGAGAGCAATTCCAAGATGTCGTCGCTGCGTAATGCTATTCCAC 167
Query 221 GGCCTGCTCATAAGGAGCGATCTCAACCGGAAGCGAGGAAGAGGTTTGGCATCCTCGAGA 280
| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
Sbjct 168 GTCCTGCTCATAAGGAGCGATCTCAACCGCAAGCGAGGAAGAGGTTTGGCCTCCTCGAAA 227
Query 281 AGCATAAGGATTATATTATCCGAGCTAATGCTTATCACAAAAAGCAGGAAACTTTAAAGA 340
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 AGCATAAGGATTATGTTATCCGAGCTAATGCTTATCACAAAAAGCAGGAAACTTTAAAGA 287
Query 341 TACTTAGGCAGAAGGCTGCATTCAAGAATCCAGATGAATTCAACTTTAAGATGATTAATA 400
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 288 TACTGAGGCAGAAGGCGGCATTCAAGAATCCAGATGAATTCAACTTTAAGATGATCAATA 347
Query 401 GTAAAACAGTTGATGGACGTCATAGACCAAAAGATGAGGTAAATAAATACTCTGCGGAAG 460
||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 348 GTAAAACTGTTGATGGATATCATAGACCAAAGGATGAGGTAAATAAATACTCTGCGGAAG 407
Query 461 AGCTTATGATTATGAAGACTCAAGATATTGGATATGTGTTCCAAAAATGGCAGAGTGAGA 520
|||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 408 AGCTCATGATCATGAAGACCCAAGATATTGGATATGTGTTCCAAAAATGGCAGAGTGAGA 467
Query 521 AAAACAAAATTGACAAGCTGACTGCATCGCTGCAATGTACTGGGGATCAGTCAAGCCGTA 580
||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 468 AAAACAAAATTGAAAAGCTGACTGCATCCCTGCAATGTACTGGGGGTCAGTCAAGCCGTA 527
Query 581 GACATGTTTACTATGCAGAAGACAGAGAGGAGGCTAGAGAACTGGAGGTACAAGGTAGAA 640
||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 528 GACATATTTACTATGCTGAAGACAGAGAGGAGGCTAGAGAACTGGAGTTACAAGGTAGAA 587
Query 641 GCAAAAGTGATATCTCTACAGTAGAGATTCCGAAAGATATTAAAAAGAAAATGGATAGGT 700
||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 588 GCAAAAGCGATATCTCTGCAGTAGAGATTCCGAAAGATATTAAGAAGAAAATGGATAGGT 647
Query 701 CCTATAGAGACCTCGAGGGGCGGAAGAGCAGGGCTAAAGATTTGGAGAAGTTATACACGG 760
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 648 CCTATAGAGACCTCGAGGCGCGGAAGAGCAGGGCTAAAGATTTGGAGAAGTTATACACGG 707
Query 761 ATATGTCAATGCAGAAGGAGTTACAGAAAAAGGGTCGCAAACGGAAGCTGCGTGATGACG 820
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 708 ATATGTCAATGCAGAAGGAATTACAGAAAAAGGGTCGCAAACGTAAGCTGCGTGATGACG 767
Query 821 AGCTGCTCAATCCAAATGGTAAAGCGGTATACAAATGGCGCGCCGATAGAAAACGCTGAA 880
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 768 AGCTACTCAATCCAAATGGTAAAGCGGTATACAAATGGAGCGCCGATAGAAAACGCTGAA 827
Query 881 GAGAAAAGCTTTCATGGTTGTGTAGCTTGACATCATTTTTCTGATCTCTATTAAAGTTTA 940
|||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 828 GAGAAAAGGTTTCATGGTTGTGTAGCTTGACATCATTTTTCTGACCTCTACTAAAGTTTA 887
Query 941 TATAGCAG-GCAGTTTTATTATAGtttttttGATCTCCAGAACCTGCAGAACTTTACATA 999
|||||||| | |||| |||||||||||| |||||||||||||||||||| ||| |||
Sbjct 888 TATAGCAGAG-AGTT--ATTATAGTTTTT---ATCTCCAGAACCTGCAGAACCTTAGATA 941
Query 1000 -CAATTTTGGATGGGACAATATCTGTTTACTTTAAGCTCTTTGTTGCGTATCTGGAAAAG 1058
|| |||||||||||||||| | |||||||||||| ||| ||||||||||||||||||||
Sbjct 942 ACA-TTTTGGATGGGACAATTTTTGTTTACTTTAA-CTCCTTGTTGCGTATCTGGAAAAG 999
Query 1059 TTTTACT----AATGTGATTGACGAAATATAAA 1087
|||| | ||| ||||||||||||| ||||
Sbjct 1000 TTTTTTTTTTTAATTTGATTGACGAAATTTAAA 1032
Score = 165 bits (89), Expect = 6e-40
Identities = 103/109 (94%), Gaps = 3/109 (3%)
Strand=Plus/Plus
Query 15 CCCCAAAAAACCCTAAACTCTTCTTCTCGCCGACTTCTCTA-CTCCTTTCCAGAAACCAA 73
||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||
Sbjct 1 CCCAAAAAAACCCTAAACTCTTCTTGTCGCCGACTTCTCTAACTCCTTTCCAGAAATCAA 60
Query 74 GTTTCAGGTCATCGGTGAAATTTGTTGTGTTCCCGGCGACTTCTACTTT 122
||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 61 GTTTCAGGTCATCGGTGAA-TT-GTTGTGTTCCCGGCGACTTCTACTTT 107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40905889941
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5