BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60370.1
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486510 jgi|Araly1|486510|fgenesh2_kg.5__2502__AT3G60370.1 1563 0.0
> Ahg486510 jgi|Araly1|486510|fgenesh2_kg.5__2502__AT3G60370.1
Length=1004
Score = 1563 bits (846), Expect = 0.0
Identities = 956/1008 (95%), Gaps = 12/1008 (1%)
Strand=Plus/Plus
Query 1 CGCCGGAGGGAGAAGCAATGGTGACGATTCTATC-A--ACTCCTCTCTCTCCAAGACTTA 57
|||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1 CGCCGGAGGGAGAAGCTATGGTGACGATTCTATCAACTACTCCTCTCTCTCCAAGACTTA 60
Query 58 CATTTCTCTGTGAAACAAAACTGTCATTATCTC-G-G-AGCAATCGCTCGGTATGTTGTT 114
||||||||||||||||||||||||||||||||| | | ||||| ||||||||||||||||
Sbjct 61 CATTTCTCTGTGAAACAAAACTGTCATTATCTCGGAGCAGCAAACGCTCGGTATGTTGTT 120
Query 115 CATTGAGTGAAGAACCAAAAGACCAATGCTTGAGTCGGAGAAGTCTTGTTTATGTTTTAG 174
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 CATTGAGTGAAGAATCAAAAGACCAATGCTTGAGTCGGAGAAGTCTTGTTTATGTTTTGG 180
Query 175 TTGCTTCGCCGTGTTTGTTGTTACCAGCGTTGTCTTCATCTGCGAAGACTAAATCAAAGA 234
|||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 181 TTGCTTCGCCGTGTTTGTTGTTTCCGGCGTTATCTTCATCTGCGAAGACTAAATCAAAGA 240
Query 235 GTCCTTATGATGAGAGACGGTTACTAGAACAGAACAAGAGGATACAGAGAGAGAACAATG 294
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 GCCCTTATGATGAGAGACGGTTACTGGAACAGAACAAGAGGATACAGAGAGAGAACAATG 300
Query 295 CTCCTGACGAGTTTCCTAACTTTGTTAGAGAAGGTTTTGAGGTTAAGGTATTAGCTTCTG 354
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 301 CTCCTGACGAATTTCCTAACTTTGTTAGAGAAGGTTTTGAGGTTAAGGTAGTAGCTTCAG 360
Query 355 ATAATTACATCAAGGCTGATTCTGGCCTCATATATCGGGATTTCAATGTTGGTCAAGGTG 414
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 AGAATTACATCAAGGCTGATTCTGGCCTCATATATCGGGATTTCGATGTTGGTCAAGGTG 420
Query 415 ATTTCCCAAAAGATGGTCAGCAGGTGACTTTTCACTACATTGGCTACAATGAGTCTGGAA 474
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATTCCCCAAAAGATGGTCAGCAGGTGACTTTTCACTACATTGGCTACAATGAGTCTGGAA 480
Query 475 GGCGAATAGATAGTACTTACATACAAGGTTCTCCTGCTAGAATCCGCATGGGAACCAATG 534
||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 481 GGCGAATAGATAGCACTTACATACAAGGTTCTCCTGCGAGAATTCGCATGGGGACCAATG 540
Query 535 CACTTGTTCCAGGATTTGAAATGGGAATTCGTGACATGAAGCCCGGTGGGCGAAGAAGGA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CACTTGTTCCAGGATTTGAAATGGGAATTCGTGACATGAAGCCCGGTGGGCGAAGAAGGA 600
Query 595 TTATAATCCCTCCAGAATTGGGACCTCCGGTGGGACCTTCGACCTTCTTCAGCTCGAAGC 654
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 601 TTATTATCCCTCCAGAATTGGGACCTCCGGTGGGACCTTCGACCTTCTTCAGCTCAAAGC 660
Query 655 AATTTGAAGTTTTCGACGTGGAGTTGCTCAGTATCCAGAATTGTGAGAGGAGGACTATAA 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 661 AATTTGAAGTTTTCGACGTGGAGTTGCTCAGTATCCAGAATTGTGAGAGGAGGACAATAA 720
Query 715 TAGGTTTCTACTCAGATGTCACATGCAGTTAACTTCCAAATGATGGTCATCACTAAGCTT 774
|||| ||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 721 TAGGATTCTACTCAGACGTCACATGCAGTTAACTTCTAAATGATGGTCACCACTAAGCTT 780
Query 775 CAATGAACCTGCATTCTTCAAT-CTTC-AATACTCTAAATCTGCACGGCAGATGAGAACT 832
||||||| |||||||| || | || | || |||||| ||||||||||||||||| ||||
Sbjct 781 CAATGAATCTGCATTCACCATTACT-CGAA-ACTCTATATCTGCACGGCAGATGAAAACT 838
Query 833 ACAAAGAAACAAAAAGAACAATTATTCTTTGCTTAGGCATTTATCTTGTGGGTTTCATGT 892
|||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 839 GCAAAGAAACAAAAAGAACAAATCTTCTTTGCTTAGGCATTTATCTTATGGGTTTCATGC 898
Query 893 AGAGATGCACAATTACATAGAGAGACAGATAAAGATCATGTAAAGTCTCGACCTTTTTCA 952
|||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 899 AGAGGTGCACAATTACATAGAGAGA--GATAAAGATCGTGTAAAGTCTCGACCTTTTTCA 956
Query 953 TAATCGTAGTTTACTTTTGTTGCTTTGTTGATCACGTTTTAAGCGTTT 1000
||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 957 TAATCGTAGTTTACTTTTGTTGCTTGGTTGATCACGTTTTAAGCGTTT 1004
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37703564913
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5