BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60380.1
Length=2354
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939073 jgi|Araly1|939073|scaffold_503264.1 3112 0.0
> Ahg939073 jgi|Araly1|939073|scaffold_503264.1
Length=2267
Score = 3112 bits (1685), Expect = 0.0
Identities = 2073/2255 (92%), Gaps = 48/2255 (2%)
Strand=Plus/Plus
Query 121 CAATGGCGTCTCCAAATCCCTACACCAAGCGCCGCTCTCCGCCGAATGTCGTTGTA---C 177
||||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||| |
Sbjct 20 CAATGGCGTCTCCCAATCCCTACACCAAGCGTCGCTCTCCGCCTAATGTCGTCGTACCGC 79
Query 178 CG-C--CACAGCCTCGGTATAAATCCATAGGAGGAGGAGGATTTTTCTGTAAGTCTGTTC 234
|| | |||||||||||| ||||||| | ||||||||||||||||||||||||||||
Sbjct 80 CGTCTACACAGCCTCGGTCTAAATCC--A-CCGGAGGAGGATTTTTCTGTAAGTCTGTTC 136
Query 235 TATTCGCTCTTTTTCTCCTCGCCTTGCCGTTGTTCCCTTCTCAAGCTCCTGATTTCGTCG 294
| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 TGTTCGCTCTCTTTCTCTTCGCCTTGCCGTTGTTCCCTTCTCAAGCTCCTGATTTCGTCG 196
Query 295 GTGAGACTGTGCTCACTAAGTTCTGGGAACTGATTCATCTCCTATTCGTCGGCATTGCTG 354
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 197 GTGAGACTGTGCTCACCAAGTTCTGGGAACTGATTCACCTCCTATTCGTCGGCATTGCTG 256
Query 355 TTGCTTATGGTTTGTTTAGCCGTAGGAATGTTGAATCCGCTGTTGATTTAAGGATGACTC 414
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 257 TTGCTTACGGTTTGTTTAGCCGTAGGAATGTTGAATCCGGTGTTGATTTAAGGATGAATC 316
Query 415 GTGTAGATGAGTCTTCTTTGTCTTATGTATCTAGAATCTTCCAGGTTTCTTCTGTTTTTG 474
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 317 GTGTAGATGAGTCTTCTTTGTCTTATGTATCTAGGATCTTTCAGGTTTCTTCTGTTTTTG 376
Query 475 ACGAAGAGTTTGATGATAATTCTTGTGAGTTTGTTGATGTGAGGAGTGATGAGAGTGTGA 534
|||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||
Sbjct 377 ACGAAGAGTTTGATGAGAATTCTTGTGAGTTTGTTGATGTGAGGA--G-TGAGAGTGTGA 433
Query 535 GTGCTCGAGCTTCTGTGGTTGGGAAATCTGAGTCTTTTGTTGTTGAAAGCGGCGAATTGG 594
|||||||||||||||| || |||||||||||||||||||||||||||| | |||||||
Sbjct 434 GTGCTCGAGCTTCTGTTGTGGGGAAATCTGAGTCTTTTGTTGTTGAAA---GTGAATTGG 490
Query 595 AAGAATCGTCTGAATTTGGTGAAACTAATGAAGTCCGAGCTTGGAATTCGCAGTATTTCC 654
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 491 AAGAATCGTCTGAATTTGGTGAAACTAATGAAGTCCGAGCTTGGAATTCGCAGTATTTTC 550
Query 655 AGGGTAAGTCTAAGGTTGTGGTTGCTCGACCTGCTTATGGTCTTGATGGTCACGTTGTGC 714
|||| || ||||||||||||||||||||||| |||||||||||||||||||| ||| |||
Sbjct 551 AGGGGAAATCTAAGGTTGTGGTTGCTCGACCAGCTTATGGTCTTGATGGTCATGTTCTGC 610
Query 715 ATCAGCCATTAGGCTTGCCTATTAGGAGGTTAAGGTCATCTTTGAGAGATAATGCTGCTC 774
||||||| ||||||||||| |||||||| ||||||||| |||||||||||||||||||||
Sbjct 611 ATCAGCCGTTAGGCTTGCCGATTAGGAGTTTAAGGTCAGCTTTGAGAGATAATGCTGCTC 670
Query 775 TTCAAGACAAATCTTTTGCTGATAGCTGTGATGGAGCTGTTAATGCGGAAGCTGAGTCAT 834
|||||| | |||||| |||||| |||||||||||||||||| | ||||||||||||||
Sbjct 671 CTCAAGATACCTCTTTTACTGATAACTGTGATGGAGCTGTTAACGGGGAAGCTGAGTCAT 730
Query 835 TATTGGCTGATAAtttttttGATGAGGTCTTGGCTGCTCCGGCTTCACCTGTTCCATGGC 894
||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 731 TATTGGC------------TGATGAGGTCTTGGCTGATCCGGCTTCACCTGCTCCATGGC 778
Query 895 AAGCTAGACCTGAAATGATGGGAATCGGTGACAACTATCCTTCAAATTTCCAGCCTATAT 954
|| |||||||||||||||||||||| || ||||||||||||||||||||||||||| |||
Sbjct 779 AATCTAGACCTGAAATGATGGGAATGGGAGACAACTATCCTTCAAATTTCCAGCCTCTAT 838
Query 955 CTGTGGATG-AA---A-----C--C-CTTAAATCGATATCTTCTCGGTCTACTGGTTCTT 1002
||||||||| || | | | |||||||| | |||||||||||||| || |||||
Sbjct 839 CTGTGGATGAAACCCAGTTTGCTACTCTTAAATCCACATCTTCTCGGTCTAGTGCTTCTT 898
Query 1003 CTTCATCTCAAACTAGTTATGCATCCCAGAATCAGAACAGATTCTCTCCTTCTCGATCTG 1062
|||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||||||
Sbjct 899 CTTCATCTCAAACTAGTTTTGCATCCCATATTCAGAACAGATTCTCGCCTTCTCGATCTG 958
Query 1063 TTTCCGCAGAGTCACTAAACTCAAATGTGGAAGAGTTGGTCAAGGAGAAGAGTCGCCAGA 1122
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 959 TTTCTGCAGAGTCACTAAACTCAAATGTGGAAGAGTTGGTCAAGGAAAAGAGTCTTCAGG 1018
Query 1123 GTTCATCACGGTCTAGTTCGCCATCCTTGCCCCCATCACCTTCACTGTCTCCATCTCCAC 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GTTCATCACGGTCTAGTTCGCCATCCTTGCCCCCATCACCTTCACTGTCTCCATCTCCAC 1078
Query 1183 CATCGCCAGAATTAGTGCCCAATGATACTCGCAGACGTTCGCCAGAATTAGTAACCGATG 1242
||||||||||| ||||| | | ||||||| ||| |||| ||||||||||||||||||||
Sbjct 1079 CATCGCCAGAACTAGTGATCGAGGATACTCACAGGCGTTTGCCAGAATTAGTAACCGATG 1138
Query 1243 ATACTCCCAGGCGTGCGTCACATTCTCGGCATTATAGTGATGGTTCCTTGTTAGAGGAAG 1302
|||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1139 ATACTCACAGGCGTGCCTCACATTCTCGGCATTACAGTGATGGTTCCTTGTTAGAGGAAG 1198
Query 1303 ATGTAAGGCGGGGGTTTGAAAATGAGTTGGAGGGGAGTAAAGTCAGAGGCAGAAAAGCAG 1362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1199 ATGTAAGGCGGGGGTTTGAAAATGAGTTGGAGGGGAGTAAAGTCAGAGGCAGAAAAACAG 1258
Query 1363 AATTCTTCAGTAAGAAGGAACGGGGATCTAAATCACTTAATTTGGCAGCTGAAAGTTCCC 1422
||| |||||| || |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1259 AATCCTTCAGCAAAAAGGAACGGGGATCTAAATCGCTTAATTTGGCAGCTGAAAGTTCCC 1318
Query 1423 GGAGAGGGAACAAGTCTCGCAGATCCTATCCTCCTGAGTCTATCTCATCTCCCGTTGGTG 1482
||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||
Sbjct 1319 GGAGAGGGAACAAGTCTCGGAGATCCTATCCTCCTGAGTCCATCTCATCTCCCATTGGTG 1378
Query 1483 GTGCTGATGACTCCACAACTAGAAGACAAGATCTTCAGCAAAAGAGTAATTGTC-ATTTG 1541
||||||||||||||||||||||||||| |||||||||||||||||| || ||| |||||
Sbjct 1379 GTGCTGATGACTCCACAACTAGAAGACGGGATCTTCAGCAAAAGAGTGAT-GTCCATTTG 1437
Query 1542 CTTGAAGAAAATATCAGGAAAGGAGTGGAAGCTGACCATAACAATCTGAGGGTCAAAAAG 1601
|||||||| |||||| |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1438 CTTGAAGACAATATCGGGAAAGGACAGGAAGCTGACCATAACAATCTTAGGGTCAAAAAG 1497
Query 1602 GGAAGGAGTCACGACTCTTTGGAGCTAACAGCAGAAGATTCTGCAAAAGATGAGAAGGTC 1661
||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1498 GGAAGGAGTCAAGACTCTCTGGAGCTAACAGCAGAAGACTCTGCAAAAGATGAGAAGTTC 1557
Query 1662 AGTGAATCTTTTCCTGCTCTTGATGTAGTGTTCCAACCAACAAATGCTAAAGCTTCAAGG 1721
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1558 AGTGAATCTTTTCCTGCTCTTGATGTAGTGTTCCAGCCAACAAATACTAAAGCTTCAAGG 1617
Query 1722 CGCGCCATGCGTTCTTCACGAGGGGGACGTGACACTTTGCCGGAGAAGGATGTTGTCACC 1781
|| || |||| |||||||| |||||||||||||||||| |||||||| | | ||||||
Sbjct 1618 CGTGCAATGCATTCTTCACAAGGGGGACGTGACACTTTTCCGGAGAA--A-GCTGTCACA 1674
Query 1782 AGAAAATTAGAGGATGACACTGTGGATT-CGGATAAGTCCAGGAAAAAGGACCTTCCTGG 1840
||||| |||||||||||| ||| ||||| | ||||||||||||||||||||||||||||
Sbjct 1675 AGAAACTTAGAGGATGACTCTGAGGATTACA-ATAAGTCCAGGAAAAAGGACCTTCCTGG 1733
Query 1841 TAAAGACAAGGAAATGAAATTAGACGGTCCAAGAATTGAACCACGTTCTTGGAGAGCTTC 1900
||| || |||||| |||||| | || |||||||| |||||| |||||||||||||||||
Sbjct 1734 TAATGATAAGGAAGTGAAATCAAACAGTCCAAGACTTGAACTGCGTTCTTGGAGAGCTTC 1793
Query 1901 CAGTAATGTATCA-CTGAGAGGAAAGTCCGTGAGGACCATAAGATCTGATCGTCATGGGA 1959
||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1794 CAGTAATGTATCATC-GAGAGCAAAGTCCGTGAGGACCATAAGATCTGATCGTCATGGGA 1852
Query 1960 AAGATGTAAAGACAGATGGAGATTCATCTGAGGATCGGGCAGAAGCTAAAGTAGAAAGCC 2019
||| | ||||||||||||||||||||| ||| || ||| |||||||||||||||||||||
Sbjct 1853 AAGGTTTAAAGACAGATGGAGATTCATGTGAAGACCGGACAGAAGCTAAAGTAGAAAGCC 1912
Query 2020 GAGGAAGAACGAAATCGAGAAGACCACGACAAGAAGAACTATCGATTGTACTACACCAGG 2079
||||||| |||||||| ||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1913 GAGGAAGTACGAAATCAAGAAGACAACGACAAGAAGAACTATCTATTGTACTACACCAGG 1972
Query 2080 AGAAAAGTTCAGAAACTCGCGCTAAATCCGAGCCAGAAGAGGTTGCTATGGAAGAGCCCC 2139
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1973 AGAAAAGTTCAGAAACTCGCGCTAAATCCGAGCCAGAAGAGGTTGCTATGGAAGAGCCCG 2032
Query 2140 AGGCCGAGCAGCAACCTGAAGTAACTTTCGAAGAGGAGGAAGAAGCTGCTTGGGAAAGCC 2199
||||||||||||||||| |||||||||| |||||||| |||||||||| |||||||||||
Sbjct 2033 AGGCCGAGCAGCAACCTCAAGTAACTTTGGAAGAGGAAGAAGAAGCTGATTGGGAAAGCC 2092
Query 2200 AAAGCAATGCAAGCCATGATCATAATGAGGTTGATAGAAAAGCCGGTGAGTTCATAGCCA 2259
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 2093 AAAGCAATGCAAGCCATGACCATAATGAGGTTGATAGAAAAGCCGGTGAGTTCATAGCTA 2152
Query 2260 AATTCCGAGAACAAATTAGGTTGCAGAAACTCATATCCGGTGAACAACCTAGAGGAGGAG 2319
||||||| ||||||||| |||| |||||||||||||| ||||||||||||||||||||||
Sbjct 2153 AATTCCGGGAACAAATTCGGTTACAGAAACTCATATCGGGTGAACAACCTAGAGGAGGAG 2212
Query 2320 GCACTGGTATTTTCAGAAACAGCCAATTCAGATGA 2354
|||||||||||||||||||||| ||||||||||||
Sbjct 2213 GCACTGGTATTTTCAGAAACAGTCAATTCAGATGA 2247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88674090360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5