BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60390.1
Length=1357
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486512 jgi|Araly1|486512|fgenesh2_kg.5__2504__AT3G60390.1 1962 0.0
> Ahg486512 jgi|Araly1|486512|fgenesh2_kg.5__2504__AT3G60390.1
Length=1337
Score = 1962 bits (1062), Expect = 0.0
Identities = 1271/1365 (93%), Gaps = 41/1365 (3%)
Strand=Plus/Plus
Query 1 CCACAACCCCATATCTCTTTGTCTGAAAAAACTCTTTTGCATATATAAATAAATATAAGC 60
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1 CCACAACCCCATATCTCTTTGTCTGAAAAAACTCTTTTGC--ATAT--ATAAATATAAGC 56
Query 61 CATATCTTTTGAAACTGTACTGCTGCACAAGTGTAGAGGCAGTGGCACAACATCTTTAAG 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 CATATC-TTTGAAACTGTACTGCTGCACAAGTGTAGAGGCAGTGGCACAACATCTTTAAG 115
Query 121 AAAGAGAGAGAGAAAGAGTCATTTATTCA-TTTC-CTCGCTTAAAAATCTTGAGCACCCA 178
|||| ||||||| | ||||||||||||| |||| |||||| |||||||||||| |||||
Sbjct 116 -AAGAAAGAGAGAGA-AGTCATTTATTCATTTTCTCTCGCTAAAAAATCTTGAGAACCCA 173
Query 179 GACAGAATTCTTCTTTCTTCTTTCTGGGGTTGAGAAAAATGAGTGAAAGAGATGATGGAT 238
|||| || || ||||| |||||||||||| ||||||||||||||||||
Sbjct 174 GACATAA----------TT-TTTCT----TTGAGAAAAATGGGTGAAAGAGATGATGGAT 218
Query 239 TGGGGCTAAGTTTGAGCTTGAGTTTAGGTTTTAATCAAAAGGACCCGTCTTCGAGGTTAA 298
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 219 TGGGGCTAAGTTTGAGCTTGAGTTTAGGTTTTAATCATAAGGACCCGTCTTCGAGATTAA 278
Query 299 ATCCAATGCCTCTGGCTTCTTATGCATCTTCATCACACATGCAGCATATGCAGCAGAGCA 358
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 279 ATCCAATGCCTCTGGCTTCTTATTCATCTTCATCACACAT---GCATATGCAGCAGAGCA 335
Query 359 ATTATAACCATCCTCAAAAGATTCAGAACACTTGGATTAACATGTTTCAGTCATCAGAGA 418
|||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 336 ATTATAGCCATCCTCAAAAGATTCAGAACACTTGGATTAACATGTTTCAATCTTCAGAGA 395
Query 419 GAAACTCGGACATGAGATCGTTTCTCCGGGGAATAGACGTGAACAGAGCTCCATCGACGG 478
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 GAAACTCCGACATGAGATCGTTTCTCCGGGGAATAGACGTGAACAGAGCTCCATCGACGG 455
Query 479 TGGTGGTTGACGTGGAGGATGAAGGCGCCGGAGTTTCGTCTCCGAACAGCACCGTCTCAA 538
|||| ||||| ||||||||||| || |||||||| || |||||||| |||||||| ||||
Sbjct 456 TGGTTGTTGATGTGGAGGATGACGGAGCCGGAGTCTCATCTCCGAATAGCACCGTGTCAA 515
Query 539 GCGTGATGAGCGGGAAGAAGAGCGAGCGAGAGCTAATGGCTGCGGCAGGTGCA---GTTG 595
|||||||||||||||||| ||||||||| ||||||||| ||||||||| |||| | |
Sbjct 516 GCGTGATGAGCGGGAAGAGGAGCGAGCGGGAGCTAATGACTGCGGCAGCTGCAGCCGGAG 575
Query 596 GAGGAGGTAGAGTAGAAGATAATGAGATTGAGAGAGCTTCTTGCTCGCTCGGCGGTGGTA 655
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 576 GAGGAGGTAGAGTAGAAGATAACGAGATGGAGAGAGCTTCTTGCTCGCTCGGCGGTGGTA 635
Query 656 GCGACGATGAAGACGGTAGCGGGAACGGAGATGACAGTTCGAGGAAGAAACTCCGATTGT 715
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||
Sbjct 636 GCGACGATGAAGACGGTAGCGGGAACGGAGACGACGGTTCGAGGAAGAAACTCCGTTTGT 695
Query 716 CTAAAGAACAAGCTTTGGTTCTTGAAGAAACTTTTAAAGAACATAGTACACTCAATCCGA 775
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 696 CTAAAGAACAAGCTTTGGTTCTCGAAGAAACTTTTAAAGAACATAGCACACTCAATCCGA 755
Query 776 AGCAAAAGATGGCTTTGGCTAAGCAATTGAATCTGAGGACGAGACAAGTTGAAGTGTGGT 835
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 756 AGCAAAAGATGGCTTTGGCTAAGCAATTGAATCTGAGGACGAGGCAAGTAGAAGTGTGGT 815
Query 836 TCCAAAACCGAAGGGCAAGGACGAAGCTGAAGCAAACGGAAGTAGACTGTGAATATCTTA 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 TCCAAAACCGAAGGGCAAGGACGAAGCTGAAGCAAACGGAAGTAGACTGTGAATATCTTA 875
Query 896 AGAGATGTTGCGAGAATCTAACGGATGAGAATCGGAGATTGCAAAAGGAAGTGAGTGAGC 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 AGAGATGTTGCGAGAATCTAACGGATGAGAATCGGAGATTGCAAAAGGAAGTGAGTGAGC 935
Query 956 TTAGGGCTTTAAAGCTTTCTCCACACTTATACATGCACATGAAACCTCCCACTACTCTCA 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 TTAGGGCTTTAAAGCTTTCTCCACACTTATACATGCACATGAAACCTCCCACTACTCTCA 995
Query 1016 CAATGTGTCCTTCTTGCGAGCGAGTCGCTGTTACGTCATCTTCGTCATCGGTGGCTCCTC 1075
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 996 CAATGTGCCCTTCTTGCGAGCGAGTCGCTGTTACATCATCTTCGTCATCGGTGGCTCCTC 1055
Query 1076 CTGTGATGAATTCATCGTCTCCGATGGGTCCGATGAGTCCGTGGGCTGCCATGCCTCTAC 1135
||||||||| |||||| ||||||||||| ||||| ||||||||||||||||| ||||| |
Sbjct 1056 CTGTGATGACTTCATCTTCTCCGATGGGACCGATCAGTCCGTGGGCTGCCATTCCTCTCC 1115
Query 1136 GGCAACGACCTGCTGCTGGTTCTCATTAGAGTTTAATTAGTCTAAAGATAAT-AGGTTTG 1194
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1116 GGCAACGACCTGCTGCTGGTTCTCATTAGAGTTTAATTAATCTAAAGATAATTAGGTTTG 1175
Query 1195 GTGATTTGTTTTTATTATATTGTTGAA-CGGA-CTTGGAAGTTCTTTTCAAGAGTTGG-T 1251
||||||||||||||||||| ||| || || | ||||||||||||||||||||||||| |
Sbjct 1176 GTGATTTGTTTTTATTATAATGTCAAAACG-ATCTTGGAAGTTCTTTTCAAGAGTTGGGT 1234
Query 1252 CCCATGCTCTTCTTTCCTTTGTTTTATTCAGTTTCTATTTATAGCTGAATT-CTGGATAA 1310
|| |||||||||||||||||||||||||||||||||||||||| ||||||| | | | ||
Sbjct 1235 CC-ATGCTCTTCTTTCCTTTGTTTTATTCAGTTTCTATTTATAACTGAATTGC-GAAAAA 1292
Query 1311 TGGAAAA---TCTACTAATATTATTGTCCAATTATTAGTTTGGGG 1352
||||||| | |||||||||||||||| ||||||||||||||||
Sbjct 1293 TGGAAAAAAATGTACTAATATTATTGTCGAATTATTAGTTTGGGG 1337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50779725444
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5