BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60400.1
Length=2012
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939075 jgi|Araly1|939075|scaffold_503266.1 2671 0.0
> Ahg939075 jgi|Araly1|939075|scaffold_503266.1
Length=1729
Score = 2671 bits (1446), Expect = 0.0
Identities = 1621/1707 (95%), Gaps = 6/1707 (0%)
Strand=Plus/Plus
Query 1 CATGTTCATGGTTCGATTGAAATTCGCATCGATCTCTCATAATTTCAGTACGGTGGCGGC 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 25 CATGTTCATGGTTCGATTGAAATTCGCATCGATCTTTCATAATTTCAGTACGGTGGCGGC 84
Query 61 GAAACATAGAAGAGTGCCGTCGAAATACAAGTCTCTAGCCATCGGAAAAGCCCAGCAAGC 120
||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 85 GAAACATAGAAGAGTACCGTCCAAGTACAAGTCTCTAGCCATCGGAAAAGCCCAGCAAGC 144
Query 121 CATTACAGACTATCTCCACACCACCAGGTCTCTCTCCTACACTCACGCTGAACAAATTGC 180
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 145 CATTACAGACTATCTCCACACCACCAGGTCTCTCTCCTACACTCACGCCGAACAGATTGC 204
Query 181 CTCAAACGCCTCCGTTTCGATTCGAAACCTCATCCTGAAACTCGATTTCTCTGTTCCTAC 240
||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 205 CTCAAACGCCTCCGTTTCGATTCGAAATCTCATCCTGAAGCTTGATTTCTCTGTTCCTAC 264
Query 241 CTTCTCCAAATCTCTTCGGAAGCATCTCAGTTACCATCCTATTAACGAATTCGAGTTTTT 300
|||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 265 CTTCTCCAAATCGCTTCGGAAGCATCTCAGTTACCACCCAATTAACGAATTCGAGTTTTT 324
Query 301 CTTCGAGAGCATTGGCATTGACTACAGTGAGGTTAGCGAGTTTTTGCCTGAGAAGAAATT 360
||||||||||||||||||||| ||||| |||||| | |||||||||||||||||||||||
Sbjct 325 CTTCGAGAGCATTGGCATTGATTACAGCGAGGTTTGTGAGTTTTTGCCTGAGAAGAAATT 384
Query 361 CTTCTTCTCTGAGGATCGGACTGTGTTGGATGCAGCTTTTGCTTTATCTGGATTTGGGTT 420
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 385 CTTCTTCTCTGAGGATCGGACTGTGTTGGATGCAGCTTGTGCGTTATCTGGATTTGGGTT 444
Query 421 TCCTTGGAATAAGCTTGGTAAGTTGTATAAAGAGGAAAGGTTGGTTTTTGTGCAGCGTCC 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 445 TCCTTGGAACAAGCTTGGTAAGTTGTATAAAGAGGAAAGGTTGGTTTTTGTGCAGAGTCC 504
Query 481 TGGAGAAATTGAATCCAGGCTACTTAAGTTTAAAGATATAGGATTCAGTACAGTTGCGGT 540
|||||| ||||| |||||||| ||||||||||||||| |||||||||||||||| |||||
Sbjct 505 TGGAGAGATTGATTCCAGGCTGCTTAAGTTTAAAGATTTAGGATTCAGTACAGTCGCGGT 564
Query 541 GATTGGTACTTGTTTAGCGATTCCTCGTACTCTCTGTGGAGGTGGTGAATTGGGTTCGGA 600
||||||||||||||||||| ||||||||||||| ||||||||||| ||| ||||||||||
Sbjct 565 GATTGGTACTTGTTTAGCGTTTCCTCGTACTCTATGTGGAGGTGGAGAAGTGGGTTCGGA 624
Query 601 GATACGTTGTTTGTTTGTTAAGCTGAAAAGACTTTTTGATGAGTTTGATTCACATCATCT 660
| ||| ||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 625 GCTACTTTGTTTGTTTGTTAAGCTGAAGAGACTTTTTGATGAATTTGATTCACAACATCT 684
Query 661 TTTTGAAGAAAATGTGGATTCTTGGCTCGCCGTTAGCAGGAAGATTAGGATCTTTTACGA 720
|||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||
Sbjct 685 TTTTGAAGAAAATGTGGATTCTTGGCAGGCCATTAGCATGAAGATTAGGATCTTTTACGA 744
Query 721 TTTGGGTTGTGAGAATGAAGAGATGTGGGAGTTGATGTGTAGAAATAAGTCACTTTTTCT 780
||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||
Sbjct 745 TTTGGGTTGTGAGAATGAAGAGATGTGGGAGTTGATGGGTAGAAACAAATCACTTTTTCT 804
Query 781 GGAATATTCTGAAGAAGCTCTGATGAATAAGGCTGG-ATATTTTTGTAGGTTTGGTGTTA 839
||||||||||||||||||||||||||| ||||| || |||||||||| ||||||||||||
Sbjct 805 GGAATATTCTGAAGAAGCTCTGATGAAAAAGGC-GGAATATTTTTGTCGGTTTGGTGTTA 863
Query 840 GCAAAGAAGATGCTGCTCTTTTGATTCTTCGAAATCCCGCTATTATGAATTTTGATCTAG 899
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 GGAAAGAAGATGTTGCTCTTTTGATTCTTCGAAATCCCGCTATTATGAATTTTGATCTAG 923
Query 900 AGAAACCGGTGATCTCTGTTACAGGAATGCTAAAGCATTTTGGATTGAGACAGGATGAAG 959
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 924 AGAAACCAGTGATCTCTGTTACAGGAATGCTTAAGCATTTTGGATTGAGACAGGATGAAG 983
Query 960 TGGATGCTGTTGCTCAGAAGTACCCGTATGTTTTTGGTAGAAACCAATTGAAGAATCTGC 1019
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 984 TGGATGCTGTTGCTCAGAAGTACCCGTATGTTTTGGGTAGAAACAAATTGAAGAATCTGC 1043
Query 1020 CTTATGTGCTTAGAGCAATAGATTTGCATGAAAGGATCTTTGATATATTGAAGAATGGGA 1079
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1044 CTTATGTGCTTAGAGCAATAGATTTACATGAGAGGATCTTTGATATATTGAAGAATGGGA 1103
Query 1080 ACCATCATTTACTCGCTAGCTATAC-CTTGATGGATCCCGATGAAGACTTAGAGAGAGAG 1138
|||||||||||||||||||||| | || |||||||| |||||||||||||| ||||||
Sbjct 1104 GCCATCATTTACTCGCTAGCTATTCGGTT-ATGGATCCTGATGAAGACTTAGACAGAGAG 1162
Query 1139 TATCAAGAAGGCTTGGAGGAGCTTCAAAACTCAAGAACCAAAAGACACAACATTCAAAAG 1198
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1163 TATCAAGAAGGCTTGGAGGAGCTTCAAAACTCAAGAACCAAAACACACAATATTCAAAAA 1222
Query 1199 TTGGATTTCCTTCATGAAATAGGGTTTGGCGAAAACGGCATCACCATGAAGGTACTACAA 1258
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1223 CTGGATTTCCTTCATGAAATAGGGTTTGGCGAAAACGGCATGACTATGAAGGTACTACAA 1282
Query 1259 CATGTACATGGTACGGCGGTAGAACTCCACGACCGATTCCAAATCTTACTAAACAGTGGC 1318
||||| ||||||||||| |||||||| || ||||||||||||||||||||| ||||||||
Sbjct 1283 CATGTCCATGGTACGGCCGTAGAACTACAAGACCGATTCCAAATCTTACTAGACAGTGGC 1342
Query 1319 ATCATTTTCTCAAAGATATGCATGTTGATAAGATCAGCACCAAAGATCTTGAATCAGAAA 1378
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1343 ATCATTTTCTCAAAGATATGCTTGTTGATAAGATCAGCACCAAAGATCTTGAACCAGAAA 1402
Query 1379 CCACATAGCATACAAGATAAACTAAGGTTCCTCTGTGGCGAGATGGGAGATTCTTTGGAT 1438
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1403 CCACATAGCATACAAGATAAGCTAAGGTTCCTCTGTGGCGAGATGGGAGATTCTTTGGAC 1462
Query 1439 TACCTAGAGGTTTTCCCAGCTTATCTTTGTTTTGACCTGGAGAACAGAATCAGTCCAAGG 1498
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1463 TACCTAGATGTTTTCCCAGCTTATCTTTGTTTTGACCTGGAGAACAGAATCAGTCCAAGG 1522
Query 1499 TTTAGATTCCATAAGTGGCTTGTGGAGAAAGGGTTTAGCGAGAAAAGCTATTCAATCGCA 1558
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1523 TTTAGATTCCATAAGTGGCTTGTGGAGAAAGGGTTGAGCGAGAAAAGCTATTCAATCGCA 1582
Query 1559 AGCATTGTAGCTACAAGCGAAAAGGCCTTCATAGCTCGTCTATATGGGATTCATCCTGCA 1618
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1583 AGCATTGTAGCTACGAGCGAAAAGGCCTTCATAGCTCGTCTATATGGGATTCATCCAGCA 1642
Query 1619 ATCCCGAAACATTGGTTCGAACGCTTCTCCAGCAGAAAAACCAGAGACACTGTA-TCCTA 1677
||||||||||||||||| ||||||||| ||| |||||||||||||| ||||||| |||||
Sbjct 1643 ATCCCGAAACATTGGTTTGAACGCTTCGCCAACAGAAAAACCAGAGCCACTGTAATCCTA 1702
Query 1678 A-CTGAACAAAAAGACTCTTTGGATCT 1703
| ||||| |||||||||||||||||||
Sbjct 1703 AACTGAATAAAAAGACTCTTTGGATCT 1729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75647226570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5