BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60410.1
Length=1555
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486516 jgi|Araly1|486516|fgenesh2_kg.5__2508__AT3G60410.1 2170 0.0
> Ahg486516 jgi|Araly1|486516|fgenesh2_kg.5__2508__AT3G60410.1
Length=1505
Score = 2170 bits (1175), Expect = 0.0
Identities = 1426/1539 (93%), Gaps = 50/1539 (3%)
Strand=Plus/Plus
Query 1 AGCAATAACATAACTGCCGCTCTTCATTCTCTCTCATTTCTTTCGCTCTACATTGGCTCT 60
|||||||||||||||||||||||||| |||||||| || | |||| ||||||||||
Sbjct 1 AGCAATAACATAACTGCCGCTCTTCA-TCTCTCTC---TC--T--CTCTGCATTGGCTCT 52
Query 61 GTGTTTTTTGAATTATCTATTGATTTCCATTAGGGTTTTCTCAC-TTCTTTGATCGATTG 119
||| |||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 53 GTG-TTTTTGAATTCTCTATTGATTTCCATTAGGGTTTTCTCACTTTCTTCGATCGTTTG 111
Query 120 AATTATATATGTTCCGTCAATCCATGGCGTTTCCTCCACCGATCCATGGTTCCGATGCAC 179
||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 112 AATTATAGATGTTCCGTCAATCCATGGCGTTTCCTCCACCGACCCATGGTTCTGATGCAC 171
Query 180 CGCCGCCGCCACAGCCGCCGTCGGTGGTGAACGGGATTGAAACCTCTAGACGGCAGCAGC 239
|||||||||| ||||||||||||||||||||||||| |||||||||||||| | |||||
Sbjct 172 CGCCGCCGCCTCAGCCGCCGTCGGTGGTGAACGGGAGTGAAACCTCTAGAC-G--GCAGC 228
Query 240 AACAGATTGCAGCAGCTTCTTCTTCGCCGGTGAAATCTCATCCGCTTCATAACTTCCCTT 299
|||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 229 AACATATTGCAGCAGCTTCTTCTTCTCCGGTGAAATCCCATCCGCTTCATAACTTCCCTT 288
Query 300 TGTCTGATCTCAGATGGGCTATGAATCACGCCAATACACACCGGCTCCGCAAAGCATCGA 359
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 289 TGTCTGATCTCAGATGGGCTATGAATCACGCCAATACACATCGGCTCCGCAAAGCATCGA 348
Query 360 GTAGATCTCCGCTTCGTGAAGCTAATAC-TGGGAAAGGAAATCTGGTGATTGAGGAGGTG 418
|||||||||| ||||||||||||||| | ||||||||| |||||||||||||||||||||
Sbjct 349 GTAGATCTCCACTTCGTGAAGCTAAT-CATGGGAAAGGGAATCTGGTGATTGAGGAGGTG 407
Query 419 AACGAAGCTTCAGGTTCTTCGTTTGAATTGAGACCGGAGAAGAAGAAGGG--A-AACGCG 475
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 408 AACGAAGCTTCAGGTTCTTCGTTTGAATTGAGACCGGAGAAGAAGAAGGGAAACAACGCG 467
Query 476 TCTGGTGTTAGCGATTCCGCCGCAGATAGATCCGCGACGAAGTCAACGACGCCGGACGGT 535
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 468 GCTGGTGTCAGCGATTCCGCCGCAGATCGATCCGCGACGAAGTCAACGACGCCGGACGGT 527
Query 536 AGATCGAAGATCTTTATACGGATCCGCACGAAGAACAACGAAGAAACAGCTGTATCGACT 595
|||||||||||||| |||||||||||||||||||||||||||| || | | | | ||
Sbjct 528 AGATCGAAGATCTTCATACGGATCCGCACGAAGAACAACGAAG-AA-A-C---A--G-CT 578
Query 596 GATATCGCCACCT-C--CGTCGCCGCCTCTGTTCAAGTGACTGATGATTCAGCTGGTCCG 652
||||||||||||| | |||||||||| |||| ||||||||||||||||||||||||| |
Sbjct 579 GATATCGCCACCTCCGTCGTCGCCGCCGCTGTCCAAGTGACTGATGATTCAGCTGGTCAG 638
Query 653 GCGATCGATGCTGAAGGTGAACGGATCTCCGATGGTGGTGGTCAGGAAGCAGACGAGTTT 712
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 639 GCGATCGATGCTGAAGGTGAACGGATCTCCGATGGTGGAGGTCAGGAAGCAGACGAGTTT 698
Query 713 GGACCGAAGACTTGGAATCTGAGGCCGAGGAGACCACCGCCGACGAAGAAGCGGTCAATT 772
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 699 GGTCCGAAGACTTGGAATCTGAGGCCGAGGAGACCACCGCCGACGAAGAAGCGTTCAATT 758
Query 773 GGACACGGCGGTGGGGTATTGAAGAGCTGTAACGGTGCTTTACC-G-GAG-AATAAATCT 829
||||||||||||||| || ||||||||||||||||||||||||| | ||| || ||||||
Sbjct 759 GGACACGGCGGTGGGATACTGAAGAGCTGTAACGGTGCTTTACCGGAGAGCAACAAATCT 818
Query 830 CTGGGAACGGTAAGAACAGAGTCAATACGATCGAGGAACGGTGTAGATGCTAAGATGGCG 889
||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 819 CTGGGAACGGTTAGAACAGAGTCAATTCGATCCAGGAACGGTGTAGATGCTAAGATGGCG 878
Query 890 ACGACGGAAAGAAAGGAGAAGAAACCGAGGTTATCGATATCGCTCTCAAAGCTGGAGATA 949
|||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 879 ACGATGGAAAGAAAGGAGAAGAAACCGAGGTTATCGATTTCGCTCTCAAAGTTGGAGATA 938
Query 950 GATGAAGATATCTACGCGTTGACTGGATCAAAACCTAGTAGAAGACCAAAGAAGAGAGCC 1009
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 939 GATGAAGATATCTACGCGTTGACTGGATCAAAACCTAGCAGGAGACCAAAGAAGAGAGCC 998
Query 1010 AAGAACGTGCAGAAGCAGCTCGATGTTCTTTTCCCTGGTTTGTGGATGGGTAACGTTTCT 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 AAGAACGTGCAGAAGCAGCTCGATGTTCTTTTCCCTGGTTTGTGGATGGGTAACGTTTCT 1058
Query 1070 TCAGAAGCATATAAGGTCTCAGAACATGCTTGAAAGGGTTGAATGAGAATGATGTGAAGT 1129
||||| || || ||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1059 TCAGACGCTTACAAGGTCTCAGAACATGCTTGAAAGGATTGAATGGGAATGATGTGAAGT 1118
Query 1130 TAATCTTGTTGAATCGGATTCGACTGAAATCAGATAGGAGCGTCGAAGAAGCTTCTTCCA 1189
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 1119 TAATCTTGTTGAATTGGCTTGGACTGAAATCAGATAGGAGCGTCGAAGAAGCTTCTTCCA 1178
Query 1190 TTGATTGAGGTATAAAAGAACTGC-GAATGATTCGTTTCTTCAAGTTTTGGCTTCATTAC 1248
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
Sbjct 1179 CTGATTGAGGTATAAAAGAACTGCTGAATGATTCGTTTCTTCAAGTGTTGGCTTCATTGC 1238
Query 1249 TGGCTCGTCGG---TTTCAAGAGCCGAATTCAACTTC-AACTTCAGATACGGTCTTAAGT 1304
||||||| ||| |||||||||| || ||||||||| |||||||||| |||||
Sbjct 1239 TGGCTCGCCGGCGGTTTCAAGAGCTGATTTCAACTTCCAACTTCAGATTCGGTC------ 1292
Query 1305 CCTAACTGTCGGCAGTATAAAATGTGAATCAAACTAGTTTTCTGATCCAGTCGTCTTATT 1364
| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1293 C-TAACTGTCGGCACTATAAAATGTGAATAAAACTAGTTTTCTGATCCAGTCGTCTTATT 1351
Query 1365 TGTTACCACTGATGTGAGGTGTTGATACGGCCTCTAtttttttttttCTGTTTAATTCAT 1424
|||||||||| |||||||||||||||||||||| |||||||||| ||||||| |||||
Sbjct 1352 TGTTACCACTAATGTGAGGTGTTGATACGGCCTTTATTTTTTTT---CTGTTTA-TTCAT 1407
Query 1425 TCACTTTGTGTAATAAGATTAGTGGGATAGCCTGACTTTTTGTAAAGGTGGAAAAATAAA 1484
||||||| | |||||||||||||||||||||||||| | |||||||||| ||||| ||||
Sbjct 1408 TCACTTTTTCTAATAAGATTAGTGGGATAGCCTGACCTATTGTAAAGGTAGAAAA-TAAA 1466
Query 1485 ATCAGAATTATCAACATAATTTATTTATTCCATTACTAA 1523
|||||||||||||||| ||||| |||||| |||||||||
Sbjct 1467 ATCAGAATTATCAACAAAATTTCTTTATTTCATTACTAA 1505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58239984605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5