BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60420.2
Length=1232
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939077 jgi|Araly1|939077|scaffold_503268.1 1007 0.0
Ahg486518 jgi|Araly1|486518|fgenesh2_kg.5__2510__AT3G60450.1 455 4e-127
Ahg324496 jgi|Araly1|324496|fgenesh1_pm.C_scaffold_5002040 398 6e-110
> Ahg939077 jgi|Araly1|939077|scaffold_503268.1
Length=866
Score = 1007 bits (545), Expect = 0.0
Identities = 599/626 (96%), Gaps = 0/626 (0%)
Strand=Plus/Plus
Query 1 ACACCGAGAAAGGCAATGGAGTCGGCTAAATCAATCATCGGTGGCCACCAAAATGTCATC 60
|||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 6 ACACAGAGAAAGGCAATGGAGTCGGCTAAATCAAACATCCATGGCCACCAAAATGTCATC 65
Query 61 CTGATGCGTCATGGTGATCGACTCGACAATTTCGAGCCACTCTGGACTTCAACAGCTGCG 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 GTGATGCGTCATGGTGATCGACTCGACAATTTCGAGCCACTCTGGACTTCAACAGCTGCG 125
Query 121 AGACCGTGGGATCCACCGCTTGCTCAAGACGGTAAGGATCGGGCCTTTAGAACTGGTCAG 180
|||||||||||||||||||||||||| ||||||||| | ||||||||||||| |||||||
Sbjct 126 AGACCGTGGGATCCACCGCTTGCTCAGGACGGTAAGAACCGGGCCTTTAGAAATGGTCAG 185
Query 181 AGAATCCGGTCTCAACTTGGGGTTCCGATTCACCGTGTCTTCGTCTCCCCTTTCCTCCGC 240
|||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 186 AGAATCCGGTCTCAGCTTGGGTTTCCGATTCACCGTGTATTCGTCTCCCCTTTCCTCCGC 245
Query 241 TGCATCCAGACCGCTTCCGAAGTCGTTGCCGCCCTCTCAGCCGTCGATTTCGATCCCATT 300
||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||||| |
Sbjct 246 TGCATCCAGACCGCTTCTGAAGTCGTTGCCGCTCTCTCAGCCGTTGATTTTGATCCCAAT 305
Query 301 GCTATGTCATCTAAAGACGTGCTTTCCATCGACAATACTAAGATCAAGGTGGCTATTGAA 360
||| |||| |||| |||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 306 GCTGTGTCTTCTAGAGACGTCCTTTCCATCGACAATACAAAGATCAAGGTAGCTATTGAA 365
Query 361 TTTGGATTGTCCGAGATACCGCACCCAATCTTTATTAAGAGTGAAGTTGCTCCCAAAGAT 420
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 366 TTTGGATTGTCCGAGATACCGAACCCAATCTTTATTAAGAGTGAAGTTGCTCCCAAAGAT 425
Query 421 GGGAAATTTGATTTCAAGATTTCAGATCTTGAAGCTATGTTTCCTGAAGGAACAGTGGAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 GGGAAATTTGATTTCAAGATTTCAGATCTTGAAGCTATGTTTCCTGAAGGAACAGTGGAT 485
Query 481 TCTAATGTGGATATGGTTTATAAAGAGGTGCCAGAATGGGGAGAATCTGCACAAGCCTTT 540
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 486 TCTAATGTGGATATGATTTATAAAGAGGTGCCAGAATGGGGAGAGTCTGCACAAGCCTTT 545
Query 541 GAGGATCGATATTATAAGACAGTGAAGATTCTTGCGGAGAAGTATCCTTCTGAGAACTTG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 GAGGATCGATATTATAAGACAGTGAAGATTCTTGCGGAGAAGTATCCTTCTGAGAACTTG 605
Query 601 CTCTTAGTCACTCATTGGGGAGCAGT 626
||||| ||||||||||||||||||||
Sbjct 606 CTCTTGGTCACTCATTGGGGAGCAGT 631
> Ahg486518 jgi|Araly1|486518|fgenesh2_kg.5__2510__AT3G60450.1
Length=949
Score = 455 bits (246), Expect = 4e-127
Identities = 508/631 (81%), Gaps = 31/631 (5%)
Strand=Plus/Plus
Query 14 CAATGGAGTCGGCTAAATC-AATCAT---CGGTGGCCACCAAAATGTCATCCTGATGCGT 69
|||||||||| | ||||| || ||| || |||| ||||||| || || | ||||||
Sbjct 15 CAATGGAGTCTCCCAAATCTAA-CATGGACGATGGCTACCAAAACATCTTCGTCATGCGT 73
Query 70 CATGGTGATCGACTCGACAATTTCGAGCCACTCTGGACTTCAACAGCTGCGAGACCGTGG 129
|| ||||||||| ||||||||||||||||||||||| |||||| || | |||||| |||
Sbjct 74 CACGGTGATCGAATCGACAATTTCGAGCCACTCTGGGTTTCAACCGCCGAGAGACCTTGG 133
Query 130 GATCCACCGCTTGCTCAAGACGGTAAGGA-TCGGGCCTTTAGAACTGGTCAGAGAATCCG 188
||||| || || | |||||||||| | || ||| || ||| | || ||||| || |||||
Sbjct 134 GATCCGCCTCTGGTTCAAGACGGT-ATGATTCGAGCTTTTCGTACCGGTCAAAGGATCCG 192
Query 189 GTCTCA-ACTTGGGGTTCCGATTCACCGTGTCTTCGTCTCCCCTTTCCTCCGCTG-CATC 246
||||| | | ||| ||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 193 ATCTCAGA-TCGGGTTTCCGATTCACCGTGTCTTCGTCTCCCCTTTCCTCCGATGTC-TC 250
Query 247 CAGACCGCTTCCGAAGTCGTTGCCGCCCTCTCAGCCGTCGATTTCGATCCCATTGCTATG 306
||||| |||||||||||||| || || ||||| |||||| || ||||||||| ||||||
Sbjct 251 CAGACAGCTTCCGAAGTCGTCGCAGCTCTCTCCGCCGTCAATGTCGATCCCAACGCTATG 310
Query 307 TCATCTAAAGACGTGCTTTCCATCGACAA-TACTAAGATCAAGGTGGCTATTGAATTTGG 365
|| || |||||||| | |||||| || || | ||||| ||||||| |||||||||| ||
Sbjct 311 TCTTCCAAAGACGTCCCTTCCATTGATAAAT-CTAAGCTCAAGGTTTCTATTGAATTAGG 369
Query 366 ATTGTCCGAGATACCGCACCCAATCTTTATTAAGA-GTGAAG-TTGCTCCCAAAGATGGG 423
|||| ||||| | | || || | ||| ||| |||| | ||||||| |||||||||
Sbjct 370 TTTGTGTGAGATGCTGAACTCAGTGGCTAT-AAGGCGTGA-GCTTGCTCCTAAAGATGGG 427
Query 424 AAATTTGATTTCAAGATTTCAGATCTTGAAGCTATGTTTCCTGAAGGAACAGTGGATTC- 482
|||||||| |||| ||||||||| ||||| ||||||||||||| |||| |||||| |
Sbjct 428 AAATTTGACTTCACTATTTCAGATATTGAAACTATGTTTCCTGAGGGAATGGTGGAT-CA 486
Query 483 TAATGTGGATATGGTTTATAAAGAGGTGCCAGAATGGGGAGAATCTG-CACAAGCCTTTG 541
|||||| |||||||||||||||||| ||||| |||||| ||| |||| | ||| || |
Sbjct 487 TAATGTCGATATGGTTTATAAAGAGTTGCCAAAATGGGAAGAGTCTGTCG-AAGG-TT-G 543
Query 542 -AG-GATCGATAT-T-ATAAGACAGTGAAGATTCTTGCGGAGAAGTATCCTTCTGAGAAC 597
|| ||||||||| | | ||| || ||| |||||| || ||||||||||| ||||||
Sbjct 544 CAGAGATCGATATGTGA-AAGTT-GTAAAGGCTCTTGCTGATAAGTATCCTTCAGAGAAC 601
Query 598 TTGCTCTTAGTCACTCATTGGGGA-GCAGTT 627
|||||||||||||| || ||||| | ||||
Sbjct 602 TTGCTCTTAGTCACCCAC-GGGGAAGGAGTT 631
> Ahg324496 jgi|Araly1|324496|fgenesh1_pm.C_scaffold_5002040
Length=768
Score = 398 bits (215), Expect = 6e-110
Identities = 492/622 (79%), Gaps = 33/622 (5%)
Strand=Plus/Plus
Query 16 ATGGAGTCGGCTAAAT-CAATCATCGGTGGCCACCAAAATGTCATCCTGATGCGTCATGG 74
|||||||| |||||| ||||| || |||| |||||||| || | |||||||||| ||
Sbjct 1 ATGGAGTCTACTAAATCCAATC-CCGATGGCTACCAAAATATCTTAATGATGCGTCACGG 59
Query 75 TGATCGAC-TCGA-CAATTTCGAGCCACTCTGGACTTC-A-ACAGCTGCGAGACCGTGGG 130
|||||| | | || ||| || | ||||||||| | || | |||||||||||||| ||||
Sbjct 60 TGATCG-CATTGACCAA-ATCAATCCACTCTGG-C-TCGATACAGCTGCGAGACCTTGGG 115
Query 131 ATCCACCGCTTGCTCAAGACGGTAAGGATCGGGCCTTTAGAACTGGTCAGA-GAATCCGG 189
|||| || || | ||||||||||| || |||||| ||| |||||||||| | | || ||
Sbjct 116 ATCCTCCTCTCGTTCAAGACGGTATGGTTCGGGCGTTTCGAACTGGTCA-ACGGATTCGA 174
Query 190 TCTCA-ACTTGGGGTTCCGATTCACCGTGTCTTCGTCTCCCCTTTCCTCCGCTGCATCCA 248
|| || | | ||||||||||||||||||||||||||||||| |||| || |||||
Sbjct 175 TCACAGA-TCCAATTTCCGATTCACCGTGTCTTCGTCTCCCCTTTTTTCCGATGTATCCA 233
Query 249 GACCGCTTCCGAAGTCGTTGCCGCCCTCTCAGCCGTCGATTTCGATCCCATTGCTATGTC 308
||| |||||||||||| | || || ||||| ||||| ||||||||||||| |||| |||
Sbjct 234 GACTGCTTCCGAAGTCATCGCTGCTCTCTCCGCCGTTGATTTCGATCCCAACGCTACGTC 293
Query 309 ATCTAAAGACGT-GCTTTCCATCGACAA-TACTAAGATCAAGGTGGCTATTGAATTTGGA 366
||||||||||| | |||| ||||| || | ||||| ||||||| ||||||| |||||
Sbjct 294 GTCTAAAGACGTCG-TTTCAATCGATAAAT-CTAAGCTCAAGGTTTCTATTGAGTTTGGC 351
Query 367 TTGTCCGAGATACCGCACCCAATCTTTATTAAGAGTGA-AGTTGCTCCCAAAGATGGGAA 425
||| ||||| | | | |||||| ||||||| ||| | |||||||||||||||||||
Sbjct 352 TTGAGTGAGATGCTGAATTCAATCTCTATTAAGCCTGAGA-TTGCTCCCAAAGATGGGAA 410
Query 426 ATTTGATTTCAAGATTTCAGATCTTGAAGCTATGTTTCCTGAAGGAACAGTGGATTC-TA 484
||| ||||||| |||||||||||||||||||||||||||| | |||| || ||| | ||
Sbjct 411 ATTCGATTTCATGATTTCAGATCTTGAAGCTATGTTTCCTCATGGAATGGTTGAT-CATA 469
Query 485 ATGTGGATA-TGGTTTATAAAGAGGTGCCAGAATGGGGAGA-ATCTGCACAAGCCTTTG- 541
||| ||| || ||||||||||| ||||| |||||| ||| | ||| ||| ||
Sbjct 470 GTGTAGATCCTG-TTTATAAAGAGATGCCACAATGGGAAGAGA-CTGTGGAAGGCTGCAC 527
Query 542 AGGATCGATATTAT-AAGAC-AGTGAAGATTCTTGCGGAGAAGTATCCTTCTGAGAACTT 599
|| || | | || | || | | |||| |||||| || ||||||||||| ||||||||
Sbjct 528 AG-ATAGGT-TTCTTAATTTGATT-AAGACTCTTGCTGATAAGTATCCTTCAGAGAACTT 584
Query 600 GCTCTTAGTCACTCATTGGGGA 621
||||||||||||||| |||||
Sbjct 585 GCTCTTAGTCACTCAC-GGGGA 605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46014360819
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5