BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60440.1
Length=1204
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324496 jgi|Araly1|324496|fgenesh1_pm.C_scaffold_5002040 987 0.0
Ahg486518 jgi|Araly1|486518|fgenesh2_kg.5__2510__AT3G60450.1 654 0.0
Ahg349076 jgi|Araly1|349076|fgenesh1_pg.C_scaffold_5002468 566 2e-160
> Ahg324496 jgi|Araly1|324496|fgenesh1_pm.C_scaffold_5002040
Length=768
Score = 987 bits (534), Expect = 0.0
Identities = 613/651 (94%), Gaps = 5/651 (1%)
Strand=Plus/Plus
Query 97 ATGGAGTCTGCTAAATCAAAAAATCCCGATAGCTACCAAAATATCTTGATGATGCGTCAC 156
||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||
Sbjct 1 ATGGAGTCTACTAAATC---CAATCCCGATGGCTACCAAAATATCTTAATGATGCGTCAC 57
Query 157 GGTGATCGCATTGACAAAATCGATCCACTCTGGCTTGATACAGCTGCGAGACCTTGGGAT 216
||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 58 GGTGATCGCATTGACCAAATCAATCCACTCTGGCTCGATACAGCTGCGAGACCTTGGGAT 117
Query 217 CCTCCTCTCGTTCAAGACGGTATGGTTCGTGCGTTTCAAACTGGTCAACGGATTCGATCT 276
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 118 CCTCCTCTCGTTCAAGACGGTATGGTTCGGGCGTTTCGAACTGGTCAACGGATTCGATCA 177
Query 277 CAGATCCAATTTCCGATTCACCGTGTCTTCGTCTCTCCTTTTATCCGATGTATACAGACT 336
||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||
Sbjct 178 CAGATCCAATTTCCGATTCACCGTGTCTTCGTCTCCCCTTTTTTCCGATGTATCCAGACT 237
Query 337 GCTTCCGAAGTCATCGCTGCTCTCTCCGCCGTCGATTTCGATCCTAACGCTACTTCGTCC 396
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 238 GCTTCCGAAGTCATCGCTGCTCTCTCCGCCGTTGATTTCGATCCCAACGCTACGTCGTCT 297
Query 397 AAAGACGTCACTTCAATCGATAAATATAAGCTTAAGGTTTCCATTGAATTTGGTTTGAGT 456
||||||||| |||||||||||||| |||||| |||||||| ||||| ||||| ||||||
Sbjct 298 AAAGACGTCGTTTCAATCGATAAATCTAAGCTCAAGGTTTCTATTGAGTTTGGCTTGAGT 357
Query 457 GAGATGCTGAATTCAAT-TGCTATTAAGCCTGAGATTGCTCCCAAAGATGGGAAATTCGA 515
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GAGATGCTGAATTCAATCT-CTATTAAGCCTGAGATTGCTCCCAAAGATGGGAAATTCGA 416
Query 516 TTTCATGATTTCAGAACTTGAAGCGATTTTTCCTGATGGAATGGTTGATCATAGTGTAGA 575
||||||||||||||| |||||||| || |||||| |||||||||||||||||||||||||
Sbjct 417 TTTCATGATTTCAGATCTTGAAGCTATGTTTCCTCATGGAATGGTTGATCATAGTGTAGA 476
Query 576 TCCTGTTTATAAAGAGATGCCACAATGGGAAGAGACTGTGGAAGGCTGCACAGATAGATT 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 477 TCCTGTTTATAAAGAGATGCCACAATGGGAAGAGACTGTGGAAGGCTGCACAGATAGGTT 536
Query 636 TCTTAGTTTGATAAAGACTCTTGCTGATAAGTATCCTTCAGAGAACTTGCTCTTGGTCAC 695
||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 537 TCTTAATTTGATTAAGACTCTTGCTGATAAGTATCCTTCAGAGAACTTGCTCTTAGTCAC 596
Query 696 TCACGGGGAAGGAGTAAGGACTACATTTGCAACCTTTAAAGGCGTACATGT 746
|||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 597 TCACGGGGAAGGAGTAAGGACTACATTTGCAACCTTTAAAGGCGTAGATGT 647
> Ahg486518 jgi|Araly1|486518|fgenesh2_kg.5__2510__AT3G60450.1
Length=949
Score = 654 bits (354), Expect = 0.0
Identities = 647/786 (82%), Gaps = 29/786 (4%)
Strand=Plus/Plus
Query 93 AACAATGGAGTCTGCTAAATCAAAAAAT-CCCGATAGCTACCAAAATATCTT-GATGATG 150
||||||||||||| | ||||| || || |||| |||||||||| ||||| | | |||
Sbjct 13 AACAATGGAGTCTCCCAAATC-TAACATGGACGATGGCTACCAAAACATCTTCG-TCATG 70
Query 151 CGTCACGGTGATCGCATTGACAAAATCGATCCACTCT-GGCTTGATACAGCTGCGAGACC 209
|||||||||||||| || ||||| |||| ||||||| || || | || || | ||||||
Sbjct 71 CGTCACGGTGATCGAATCGACAATTTCGAGCCACTCTGGGTTTCA-ACCGCCGAGAGACC 129
Query 210 TTGGGATCCTCCTCTCGTTCAAGACGGTATGGTTCGTGCGTTTCAAACTGGTCAACGGAT 269
||||||||| ||||| ||||||||||||||| |||| || |||| || |||||| ||||
Sbjct 130 TTGGGATCCGCCTCTGGTTCAAGACGGTATGATTCGAGCTTTTCGTACCGGTCAAAGGAT 189
Query 270 TCGATCTCAGATCCAATTTCCGATTCACCGTGTCTTCGTCTCTCCTTTTATCCGATGTAT 329
|||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 190 CCGATCTCAGATCGGGTTTCCGATTCACCGTGTCTTCGTCTCCCCTTTCCTCCGATGTCT 249
Query 330 ACAGACTGCTTCCGAAGTCATCGCTGCTCTCTCCGCCGTCGATTTCGATCCTAACGCTAC 389
||||| |||||||||||| |||| ||||||||||||||| || ||||||| |||||||
Sbjct 250 CCAGACAGCTTCCGAAGTCGTCGCAGCTCTCTCCGCCGTCAATGTCGATCCCAACGCTA- 308
Query 390 T-TCGTCCAAAGACGTCACTTCAATCGATAAATATAAGCTTAAGGTTTCCATTGAATTTG 448
| || |||||||||||| |||| || ||||||| |||||| |||||||| |||||||| |
Sbjct 309 TGTCTTCCAAAGACGTCCCTTCCATTGATAAATCTAAGCTCAAGGTTTCTATTGAATTAG 368
Query 449 GTTTGAGTGAGATGCTGAATTCAATTGCTATTAA-GCCTGAGATTGCTCCCAAAGATGGG 507
||||| ||||||||||||| ||| | |||| ||| || |||| ||||||| |||||||||
Sbjct 369 GTTTGTGTGAGATGCTGAACTCAGTGGCTA-TAAGGCGTGAGCTTGCTCCTAAAGATGGG 427
Query 508 AAATTCGATTTCA-TGATTTCAGA-ACTTGAAGCGATTTTTCCTGATGGAATGGTTGATC 565
||||| || |||| | |||||||| | ||||| | || |||||||| |||||||| ||||
Sbjct 428 AAATTTGACTTCACT-ATTTCAGATA-TTGAAACTATGTTTCCTGAGGGAATGGTGGATC 485
Query 566 ATAGTGTAGATCCT-GTTTATAAAGAGATGCCACAATGGGAAGAGACTGTGGAAGGCTGC 624
||| ||| ||| | |||||||||||| ||||| ||||||||||| |||| ||||| |||
Sbjct 486 ATAATGTCGAT-ATGGTTTATAAAGAGTTGCCAAAATGGGAAGAGTCTGTCGAAGGTTGC 544
Query 625 ACAGATAGAT-T-TCTTAGTTTGATAAAGACTCTTGCTGATAAGTATCCTTCAGAGAACT 682
| |||| ||| | | || ||| ||||| ||||||||||||||||||||||||||||||
Sbjct 545 AGAGATCGATATGTGAAAG-TTG-TAAAGGCTCTTGCTGATAAGTATCCTTCAGAGAACT 602
Query 683 TGCTCTTGGTCACTCACGGGGAAGGAGTAAGGA-CTACATTTGCAACCTT-TA-AAGGCG 739
||||||| ||||| |||||||||||||| ||| |||||||| | || || || || |
Sbjct 603 TGCTCTTAGTCACCCACGGGGAAGGAGTT-GGAACTACATTTTCGACATTCTATAAAGA- 660
Query 740 TACAT--GTGTACGACGTAGAGTATTGTGGTTGTGCTGAATTGAGAAGACAGGTGTCGAG 797
|||| |||||||| ||||| || |||| || || |||| |||||||| | || || ||
Sbjct 661 TACAACAGTGTACGAAGTAGACTACTGTGCTTATGTTGAAATGAGAAGAGAAGTCTCAAG 720
Query 798 TAAAGATGGGTCTACTAAAGCTGGAGACTTTGAGGTGATCACAAGTCTTAGTCAATG-TG 856
||||||||||||| ||||||||| |||| ||||||| | |||| | ||||| | ||
Sbjct 721 TAAAGATGGGTCTGTTAAAGCTGGGGACTATGAGGTGGTTTTGAGTCATGGTCAA-GCTG 779
Query 857 GAATCA 862
||||||
Sbjct 780 GAATCA 785
> Ahg349076 jgi|Araly1|349076|fgenesh1_pg.C_scaffold_5002468
Length=615
Score = 566 bits (306), Expect = 2e-160
Identities = 360/386 (93%), Gaps = 3/386 (1%)
Strand=Plus/Plus
Query 520 ATGATT-TCAGAACTTGAAGCGATTTTTCCTGATGGAATGGTTGATCATAGTGTAGATCC 578
||| || ||||| |||||||| | |||||| ||||||||||||||||||||||||||||
Sbjct 231 ATGCTTCTCAGATCTTGAAGCTACGTTTCCTCATGGAATGGTTGATCATAGTGTAGATCC 290
Query 579 TGTTTATAAAGAGATGCCACAATGGGAAGAGACTGTGGAAGGCTGCACAGATAGATTTCT 638
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 291 TGTTTATAAAGAGATGCCACAATGGGAAGAGACTGTGGATGGCTGCACAGATAGATTTCT 350
Query 639 TAGTTTGATAAAGACTCTTGCTGATAAGTATCCTTCAGAGAACTTGCTCTTGGTCACTCA 698
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 351 TAGTTTGATAAAGACTCTTGCTGATAAGTATCCTTCAGAGAACTTGCTCTTAGTCACTCA 410
Query 699 CGGGGAAGGAGTAAGGACTACATTTGCAACCTTTAAAGGCGTACATGTGTACG-ACGTAG 757
||||||||||||||||||||||||||||||||||||||||| | |||||| | ||||||
Sbjct 411 CGGGGAAGGAGTAAGGACTACATTTGCAACCTTTAAAGGCGCAGATGTGT-CTTACGTAG 469
Query 758 AGTATTGTGGTTGTGCTGAATTGAGAAGACAGGTGTCGAGTAAAGATGGGTCTACTAAAG 817
||||||||| |||||||||| ||||||||||||| | |||| ||||||||||||||||||
Sbjct 470 AGTATTGTGCTTGTGCTGAACTGAGAAGACAGGTATTGAGTCAAGATGGGTCTACTAAAG 529
Query 818 CTGGAGACTTTGAGGTGATCACAAGTCTTAGTCAATGTGGAATCAAGTACCATTCCTTGA 877
| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||
Sbjct 530 CAGGAGACTTTGAGGTGATTACAAGTCTTGGTCAATGTGGAATCAAGTACCATTCGTTGA 589
Query 878 GCACCACAGACCAAACTTCTGCTTAA 903
||||| ||||||||||| ||| ||||
Sbjct 590 GCACCTCAGACCAAACTCCTGTTTAA 615
Score = 183 bits (99), Expect = 2e-45
Identities = 115/123 (93%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 313 CCTTTTATCCGATGTATACAGACTGCTTCCGAAGTCATCGCTGCTCTCTCCGCCGTCGAT 372
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 99 CCTTTTATCCGATGTATCCAGACTGCTTCCGAAGTCATCGCTGCTCTCTCCGCCGTCGAT 158
Query 373 TTCGATCCTAACGCTACTTCGTCCAAAGACGTCACTTCAATCGATAAATATAAGCTTAAG 432
||||||||||||||||| ||||| || |||||||| || |||||||||| |||||| |||
Sbjct 159 TTCGATCCTAACGCTACGTCGTCTAACGACGTCACGTCCATCGATAAATCTAAGCTCAAG 218
Query 433 GTT 435
|||
Sbjct 219 GTT 221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44946919143
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5