BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60450.1
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486518 jgi|Araly1|486518|fgenesh2_kg.5__2510__AT3G60450.1 1578 0.0
Ahg324496 jgi|Araly1|324496|fgenesh1_pm.C_scaffold_5002040 551 4e-156
> Ahg486518 jgi|Araly1|486518|fgenesh2_kg.5__2510__AT3G60450.1
Length=949
Score = 1578 bits (854), Expect = 0.0
Identities = 915/945 (97%), Gaps = 2/945 (0%)
Strand=Plus/Plus
Query 10 gaagaagaaagaaaCAATGGAGTCTCCCAAATCTAACGTCGACGATGGCTACCAAAACAT 69
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1 GAAGAAGAAAGAAACAATGGAGTCTCCCAAATCTAACATGGACGATGGCTACCAAAACAT 60
Query 70 CTTCGTCATGCGTCACGGTGATCGAATCGACAATTTCGAGCCACTCTGGGTTTCAACCGC 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTCGTCATGCGTCACGGTGATCGAATCGACAATTTCGAGCCACTCTGGGTTTCAACCGC 120
Query 130 CGAGAGACCTTGGGATCCACCTTTGGTTCAAGACGGTATGATTCGAGCGTTTCGAACCGG 189
|||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| |||||
Sbjct 121 CGAGAGACCTTGGGATCCGCCTCTGGTTCAAGACGGTATGATTCGAGCTTTTCGTACCGG 180
Query 190 TCAAAGGATCCGATCTCAGATCGGGTTCCCGATTCACCGTGTCTTCGTCTCCCCTTTCCT 249
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 TCAAAGGATCCGATCTCAGATCGGGTTTCCGATTCACCGTGTCTTCGTCTCCCCTTTCCT 240
Query 250 CCGATGTCTTCAGACAGCTTCCGAAGTCGTCGCAGCTCTATCAGCCGTCAATGTCGATCC 309
||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 241 CCGATGTCTCCAGACAGCTTCCGAAGTCGTCGCAGCTCTCTCCGCCGTCAATGTCGATCC 300
Query 310 TAACGCCATGTCTTCCAAAGACGTCCCTTCCATTGATAAATCTAAGCTCAAGGTTTCTAT 369
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAACGCTATGTCTTCCAAAGACGTCCCTTCCATTGATAAATCTAAGCTCAAGGTTTCTAT 360
Query 370 TGAATTAGGTTTGTGTGAGATGTTGAACTCAGTGGCTATAAGGCGTGAGCTTGCTCCTAA 429
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 361 TGAATTAGGTTTGTGTGAGATGCTGAACTCAGTGGCTATAAGGCGTGAGCTTGCTCCTAA 420
Query 430 AGATGGGAAATTTGACTTCACTGTTTCAGATATTGAAACTATGTTTCCTGAGGGAATGGT 489
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 AGATGGGAAATTTGACTTCACTATTTCAGATATTGAAACTATGTTTCCTGAGGGAATGGT 480
Query 490 TGATCATAATGTGGATATGGTTTATAAAGAGTTGCCTAAATGGGAAGAGTCTGTGGAAGG 549
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 481 GGATCATAATGTCGATATGGTTTATAAAGAGTTGCCAAAATGGGAAGAGTCTGTCGAAGG 540
Query 550 TTGCAGAGATCGATATGTTAAAGTTGTAAAGGCTCTTGCTGATAAGTATCCTGAAGAGAA 609
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 TTGCAGAGATCGATATGTGAAAGTTGTAAAGGCTCTTGCTGATAAGTATCCTTCAGAGAA 600
Query 610 CTTGCTCTTAGTAACCCACGGGGAAGGAGTTGGAACTACATTTTCGACATTCTATAAAGA 669
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTTGCTCTTAGTCACCCACGGGGAAGGAGTTGGAACTACATTTTCGACATTCTATAAAGA 660
Query 670 TACAACAGTGTACGAAGTAGACTACTGTGCTTATGTTGAAATGAGAAGACAAGTCTCAAG 729
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 661 TACAACAGTGTACGAAGTAGACTACTGTGCTTATGTTGAAATGAGAAGAGAAGTCTCAAG 720
Query 730 TGAAGATGGGTCTGTTAAAGCTGGGGACTATGAGGTGGTTTTGAGTCATGGTCAAGCTGG 789
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TAAAGATGGGTCTGTTAAAGCTGGGGACTATGAGGTGGTTTTGAGTCATGGTCAAGCTGG 780
Query 790 GATCAGGTTTAGTCATGATCCTGTCAGTTATGAACCTGTCATAAGCCATTCACCTGTTTA 849
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 781 AATCAGGTTTAGTCATGATCCTGTCAGTTATGAACCTGTCATAAGCCAATCACCGGTTTA 840
Query 850 GTCAAATTGTCTTCAGTGTCCTCTGTTTCTGTACTTTTGAATTGTATTTGAACTGCTTTT 909
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 841 GTCAA-TTGTCTTCAGTGTCCTCTGTTTCTGTACTTTTGA-TTGTATTTGAACTGCATTT 898
Query 910 GTATGAATTATGAAACATTGTTTCAAAGTTTTCATTCAATCGAAT 954
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GTATGAATTATGAAACATTGTTTCAAAGTTTTCATTCAATCGAAT 943
> Ahg324496 jgi|Araly1|324496|fgenesh1_pm.C_scaffold_5002040
Length=768
Score = 551 bits (298), Expect = 4e-156
Identities = 527/636 (83%), Gaps = 21/636 (3%)
Strand=Plus/Plus
Query 26 ATGGAGTCTCCCAAATCTAACGTCGACGATGGCTACCAAAACATCTTCGTCATGCGTCAC 85
||||||||| | ||||| || || ||||||||||||||| ||||| | |||||||||
Sbjct 1 ATGGAGTCTACTAAATCCAA--TC-CCGATGGCTACCAAAATATCTTAATGATGCGTCAC 57
Query 86 GGTGATCGAATCGA-CAATTTCGAGCCACTCTGGGTTTC-A-ACCGCCGAGAGACCTTGG 142
|||||||| || || ||| || | ||||||| || || | || || | ||||||||||
Sbjct 58 GGTGATCGCATTGACCAA-ATCAATCCACTCT-GG-CTCGATACAGCTGCGAGACCTTGG 114
Query 143 GATCCACCTTTGGTTCAAGACGGTATGATTCGAGCGTTTCGAACCGGTCAAAGGATCCGA 202
||||| ||| | ||||||||||||||| |||| ||||||||||| |||||| |||| |||
Sbjct 115 GATCCTCCTCTCGTTCAAGACGGTATGGTTCGGGCGTTTCGAACTGGTCAACGGATTCGA 174
Query 203 TCTCAGATCGGGTTCCCGATTCACCGTGTCTTCGTCTCCCCTTTCCTCCGATGTCTTCAG 262
|| |||||| || ||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 175 TCACAGATCCAATTTCCGATTCACCGTGTCTTCGTCTCCCCTTTTTTCCGATGTATCCAG 234
Query 263 ACAGCTTCCGAAGTCGTCGCAGCTCTATCAGCCGTCAATGTCGATCCTAACGCCATGTCT 322
|| |||||||||||| |||| ||||| || ||||| || ||||||| ||||| | |||
Sbjct 235 ACTGCTTCCGAAGTCATCGCTGCTCTCTCCGCCGTTGATTTCGATCCCAACGCTACGTCG 294
Query 323 TCCAAAGACGTCCCTTCCATTGATAAATCTAAGCTCAAGGTTTCTATTGAATTAGGTTTG 382
|| ||||||||| ||| || ||||||||||||||||||||||||||||| || || |||
Sbjct 295 TCTAAAGACGTCGTTTCAATCGATAAATCTAAGCTCAAGGTTTCTATTGAGTTTGGCTTG 354
Query 383 TGTGAGATGTTGAACTCAGTGGCTAT-AAGGCGTGAGCTTGCTCCTAAAGATGGGAAATT 441
|||||||| |||| ||| | |||| ||| | |||| ||||||| ||||||||||||||
Sbjct 355 AGTGAGATGCTGAATTCAATCTCTATTAAGCC-TGAGATTGCTCCCAAAGATGGGAAATT 413
Query 442 TGACTTCACTG-TTTCAGATATTGAAACTATGTTTCCTGAGGGAATGGTTGATCATAATG 500
|| |||| || |||||||| ||||| ||||||||||| | |||||||||||||||| ||
Sbjct 414 CGATTTCA-TGATTTCAGATCTTGAAGCTATGTTTCCTCATGGAATGGTTGATCATAGTG 472
Query 501 TGGATA-TGGTTTATAAAGAGTTGCCTA-AATGGGAAGAGTCTGTGGAAGGTTGCAGAGA 558
| ||| || ||||||||||| |||| | ||||||||||| |||||||||| |||| |||
Sbjct 473 TAGATCCTG-TTTATAAAGAGATGCC-ACAATGGGAAGAGACTGTGGAAGGCTGCACAGA 530
Query 559 TCGATATGTTAAAGTTG-TAAAGGCTCTTGCTGATAAGTATCCTGAAGAGAACTTGCTCT 617
| | | | |||| ||| | ||| |||||||||||||||||||| ||||||||||||||
Sbjct 531 TAGGTTTCTTAAT-TTGATTAAGACTCTTGCTGATAAGTATCCTTCAGAGAACTTGCTCT 589
Query 618 TAGTAACCCACGGGGAAGGAGTT-GGAACTACATTT 652
|||| || |||||||||||||| ||| ||||||||
Sbjct 590 TAGTCACTCACGGGGAAGGAGTAAGGA-CTACATTT 624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36331139901
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5