BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G60460.1 Length=894 Score E Sequences producing significant alignments: (Bits) Value Ahg486519 jgi|Araly1|486519|fgenesh2_kg.5__2511__AT3G60460.1 1358 0.0 > Ahg486519 jgi|Araly1|486519|fgenesh2_kg.5__2511__AT3G60460.1 Length=912 Score = 1358 bits (735), Expect = 0.0 Identities = 849/903 (94%), Gaps = 11/903 (1%) Strand=Plus/Plus Query 2 TGgaagcgaagaaggaagagataaagaaaggtccatggaaagccgaagaagacgaagTAC 61 ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 11 TGGAAACGAAGAAGGAAGAGATAAAGAAAGGGCCATGGAAAGCCGAAGAAGACGAAGTAT 70 Query 62 TCATCAACCATGTCAAGAGATACGGTCCTCGTGATTGGAGCTCCATTCGATCCAAAGGTC 121 | ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 71 TAATCAACCATGTTAAGAGATACGGTCCTCGTGACTGGAGCTCCATTCGATCCAAAGGTC 130 Query 122 TTCTTCAACGCACCGGCAAATCCTGTCGTCTTCGTTGGGTCAATAAACTCCGTCCCAATC 181 ||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 131 TTCTTCAACGCACTGGCAAATCTTGTCGTCTCCGTTGGGTCAATAAACTCCGTCCCAATC 190 Query 182 TCAAAAATGGATGCAAGTTCTCGGCTGACGAAGAGAGGACTGTGATTGAGTTACAATCTG 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 191 TCAAAAATGGATGCAAGTTCTCGGCTGACGAAGAGAGGACTGTGATTGAGTTACAATCTG 250 Query 242 AGTTTGGTAACAAATGGGCGAGAATCGCTACGTATCTACCGGGAAGAACTGATAACGATG 301 | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 251 AATTTGGTAACAAATGGGCGAGAATCGCTACGTATTTACCGGGAAGAACTGATAACGATG 310 Query 302 TGAAGAA-TTTCTGGAGTAGCAGACAAAAGAGACTCGCTAGGATTCTTCATAACTCCTCT 360 ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 311 TGAAGAACTTT-TGGAGTAGCAGACAAAAGAGACTCGCTAGGATTCTTCATAACTCCTCT 369 Query 361 GATGCATCGAGTTCGAGTTTCAATCCCAAATCTTCTTCTTCTCATCGACTCAAGGGCAAA 420 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 370 GATGCATCGAGTTCGAGTTTCAATCCCAAATCTTCTTCTTCTCATCGAGTCAAGGGTAAA 429 Query 421 AACGTCAAACCAATCCGTCAATCCT-C------TC--AGGGTTTTGGTTTGGTTGAGGAA 471 ||||||||||||||||||||||||| | || |||| |||||||||||||||||| Sbjct 430 AACGTCAAACCAATCCGTCAATCCTTCAACCCCTCTCAGGGCTTTGGTTTGGTTGAGGAA 489 Query 472 GAGGTTACAGTTTCTTCTTCATGTTCCCAGATGGTTCCTTATTCATCTGATCAAGTTGGT 531 |||||||||||| ||||||| |||||||||||||||||| |||||||||||||| ||| | Sbjct 490 GAGGTTACAGTTGCTTCTTCGTGTTCCCAGATGGTTCCTAATTCATCTGATCAATTTGAT 549 Query 532 GATGAAGTCTTGAGGTTGCCGGATTTGGGTGTTAAGTTAGAGCATCAGCCTTTCGCTTTT 591 |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 550 GATGAAACCTTGAGGTTGCCGGATATGGGTGTTAAGTTAGAGCATCAGCCTTTCGCTTTT 609 Query 592 GGCACTGATCTTGTCCTAGCAGAGTACTCTGACTCACAGAATGATGCAAATCAGCAAGCA 651 |||||||||||||| ||| |||||| ||||||||||| |||||||||||||||||||| | Sbjct 610 GGCACTGATCTTGTTCTAACAGAGTTCTCTGACTCACCGAATGATGCAAATCAGCAAGGA 669 Query 652 ATCAGCCCTTTCTCTCCAGAAAGCAGAGAGCTTTTGGCTAGACTTGACGACCCTTTTTAC 711 || | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 670 ATTATCCCTTTCTCTCCAGAAAGCAGAGAGCTTTTGGCTAGACTCGACGACCCTTTTTAC 729 Query 712 TATGATATACTTGGACCAGCTGATTCTTCTGAGCCATTGTTCGCTCTCCCTCAGCCGTTC 771 ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 730 TATGACATACTTGGACCAGCTGATTCTTCTGAGCCATTGTTCGCTCTTCCTCAGCCGTTT 789 Query 772 TTCGAGCCTTCGCCTGTGCCGAGAAGATGCAGACATGTTTCAAAGGATGAAGAAGCTGAT 831 |||||||| ||||| | ||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 790 TTCGAGCCATCGCCAGCGCCAAGAAGATGCAGACATGTTTCAAAGGATGAAGAACCTGAT 849 Query 832 GTTTTCTTAGACGATTTCCCAGCTGACATGTTTGATCAGGTTGATCCAATCCCAAGTCCT 891 || |||||||| |||||||| ||||||||||||||||| ||||||||||||| ||||||| Sbjct 850 GTATTCTTAGATGATTTCCCGGCTGACATGTTTGATCAAGTTGATCCAATCCGAAGTCCT 909 Query 892 TAG 894 ||| Sbjct 910 TAG 912 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33128814873 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5