BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60460.1
Length=894
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486519 jgi|Araly1|486519|fgenesh2_kg.5__2511__AT3G60460.1 1358 0.0
> Ahg486519 jgi|Araly1|486519|fgenesh2_kg.5__2511__AT3G60460.1
Length=912
Score = 1358 bits (735), Expect = 0.0
Identities = 849/903 (94%), Gaps = 11/903 (1%)
Strand=Plus/Plus
Query 2 TGgaagcgaagaaggaagagataaagaaaggtccatggaaagccgaagaagacgaagTAC 61
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 11 TGGAAACGAAGAAGGAAGAGATAAAGAAAGGGCCATGGAAAGCCGAAGAAGACGAAGTAT 70
Query 62 TCATCAACCATGTCAAGAGATACGGTCCTCGTGATTGGAGCTCCATTCGATCCAAAGGTC 121
| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 71 TAATCAACCATGTTAAGAGATACGGTCCTCGTGACTGGAGCTCCATTCGATCCAAAGGTC 130
Query 122 TTCTTCAACGCACCGGCAAATCCTGTCGTCTTCGTTGGGTCAATAAACTCCGTCCCAATC 181
||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 131 TTCTTCAACGCACTGGCAAATCTTGTCGTCTCCGTTGGGTCAATAAACTCCGTCCCAATC 190
Query 182 TCAAAAATGGATGCAAGTTCTCGGCTGACGAAGAGAGGACTGTGATTGAGTTACAATCTG 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 TCAAAAATGGATGCAAGTTCTCGGCTGACGAAGAGAGGACTGTGATTGAGTTACAATCTG 250
Query 242 AGTTTGGTAACAAATGGGCGAGAATCGCTACGTATCTACCGGGAAGAACTGATAACGATG 301
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 251 AATTTGGTAACAAATGGGCGAGAATCGCTACGTATTTACCGGGAAGAACTGATAACGATG 310
Query 302 TGAAGAA-TTTCTGGAGTAGCAGACAAAAGAGACTCGCTAGGATTCTTCATAACTCCTCT 360
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 TGAAGAACTTT-TGGAGTAGCAGACAAAAGAGACTCGCTAGGATTCTTCATAACTCCTCT 369
Query 361 GATGCATCGAGTTCGAGTTTCAATCCCAAATCTTCTTCTTCTCATCGACTCAAGGGCAAA 420
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 370 GATGCATCGAGTTCGAGTTTCAATCCCAAATCTTCTTCTTCTCATCGAGTCAAGGGTAAA 429
Query 421 AACGTCAAACCAATCCGTCAATCCT-C------TC--AGGGTTTTGGTTTGGTTGAGGAA 471
||||||||||||||||||||||||| | || |||| ||||||||||||||||||
Sbjct 430 AACGTCAAACCAATCCGTCAATCCTTCAACCCCTCTCAGGGCTTTGGTTTGGTTGAGGAA 489
Query 472 GAGGTTACAGTTTCTTCTTCATGTTCCCAGATGGTTCCTTATTCATCTGATCAAGTTGGT 531
|||||||||||| ||||||| |||||||||||||||||| |||||||||||||| ||| |
Sbjct 490 GAGGTTACAGTTGCTTCTTCGTGTTCCCAGATGGTTCCTAATTCATCTGATCAATTTGAT 549
Query 532 GATGAAGTCTTGAGGTTGCCGGATTTGGGTGTTAAGTTAGAGCATCAGCCTTTCGCTTTT 591
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 550 GATGAAACCTTGAGGTTGCCGGATATGGGTGTTAAGTTAGAGCATCAGCCTTTCGCTTTT 609
Query 592 GGCACTGATCTTGTCCTAGCAGAGTACTCTGACTCACAGAATGATGCAAATCAGCAAGCA 651
|||||||||||||| ||| |||||| ||||||||||| |||||||||||||||||||| |
Sbjct 610 GGCACTGATCTTGTTCTAACAGAGTTCTCTGACTCACCGAATGATGCAAATCAGCAAGGA 669
Query 652 ATCAGCCCTTTCTCTCCAGAAAGCAGAGAGCTTTTGGCTAGACTTGACGACCCTTTTTAC 711
|| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 670 ATTATCCCTTTCTCTCCAGAAAGCAGAGAGCTTTTGGCTAGACTCGACGACCCTTTTTAC 729
Query 712 TATGATATACTTGGACCAGCTGATTCTTCTGAGCCATTGTTCGCTCTCCCTCAGCCGTTC 771
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 730 TATGACATACTTGGACCAGCTGATTCTTCTGAGCCATTGTTCGCTCTTCCTCAGCCGTTT 789
Query 772 TTCGAGCCTTCGCCTGTGCCGAGAAGATGCAGACATGTTTCAAAGGATGAAGAAGCTGAT 831
|||||||| ||||| | ||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 790 TTCGAGCCATCGCCAGCGCCAAGAAGATGCAGACATGTTTCAAAGGATGAAGAACCTGAT 849
Query 832 GTTTTCTTAGACGATTTCCCAGCTGACATGTTTGATCAGGTTGATCCAATCCCAAGTCCT 891
|| |||||||| |||||||| ||||||||||||||||| ||||||||||||| |||||||
Sbjct 850 GTATTCTTAGATGATTTCCCGGCTGACATGTTTGATCAAGTTGATCCAATCCGAAGTCCT 909
Query 892 TAG 894
|||
Sbjct 910 TAG 912
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33128814873
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5