BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60470.1
Length=1860
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899011 jgi|Araly1|899011|Al_scaffold_0005_2977 2283 0.0
Ahg349109 jgi|Araly1|349109|fgenesh1_pg.C_scaffold_5002501 370 2e-101
Ahg900382 jgi|Araly1|900382|Al_scaffold_0004_1032 243 5e-63
> Ahg899011 jgi|Araly1|899011|Al_scaffold_0005_2977
Length=1641
Score = 2283 bits (1236), Expect = 0.0
Identities = 1508/1637 (92%), Gaps = 28/1637 (2%)
Strand=Plus/Plus
Query 1 ATGAACCGAAGGTTGAATCATGAACCGGACACGGTCCTTGAGTTAAACGAATCGACTCCT 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGAACCGAAGGTTGAATCATGAACCGGACACGGTCCTTGAGTTAAACAAATCGACTCCA 60
Query 61 GGGATGTGGTGGTTTCCTACAAATCCTGAGCATCGTTGCATCTACCGAGTCCCTGACCGT 120
||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 61 GGGATATGGTGGTTTCCTACAAATCCTGAGCATCGTTGCATCTACCGAGTCCCTCATCGT 120
Query 121 CTACGTCGTGTAAATCCAGAAGCTTACACGCCTCAATTACTCCTCATTGGACCTCTTCAC 180
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 121 CTACGTCGTGTAAATCCAGAAGCATACACGCCTCAATTACTTCTCATTGGACCTCTTCAC 180
Query 181 CATTCTTTAAAATTTCAAGCTCTCAACTCTCGTGGAGATATCACAAACACAAAGTTAATG 240
||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 181 CATTCTTTAAAATCTCAAGCTCTCATGTCTAGTGGAGATATCACAAACACAAAGTTAATG 240
Query 241 GGCTACTTAAACATGGAGGAGCATAAGAAGATTTACCTTGCGAGATTCTCAGAAAGGCTT 300
|||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| ||||
Sbjct 241 GGCTACTTAAACATGGAGGAGCATAAAAAGATTTACCTCGCGAGATTCTCGGAAAAGCTT 300
Query 301 GCAGGTCAAAAAACGATTGATGAACTCagaagaagaatcaaagaagaagaagaTATAATA 360
| ||| ||||||| ||||||||| ||||||||| |||||||||||| |||||||||||
Sbjct 301 GGAGGGAAAAAAACCATTGATGAATTCAGAAGAATAATCAAAGAAGACGAAGATATAATC 360
Query 361 AGGGCAAGCTACTCTGAGTCAACTGCCTGGATTGAATCTCCAAAGTTCGTGGACATGATC 420
|||||| |||||||||| |||||||||||||| |||||| ||||||||||||| ||||||
Sbjct 361 AGGGCATGCTACTCTGAATCAACTGCCTGGATCGAATCTTCAAAGTTCGTGGATATGATC 420
Query 421 CTACACGACTCTGTTTTCATAATAGAGTTCCTTTTAAGGAGTAAAGATTACACCTTACTT 480
||||| |||||||||||||||||||||||| | |||||||||||||| |||| |||||||
Sbjct 421 CTACATGACTCTGTTTTCATAATAGAGTTCATGTTAAGGAGTAAAGAGTACATCTTACTT 480
Query 481 GAGGACCAAGGATCATGC-ATCAAGAAAACATGGGATCCTATATTTGAGCAGCCTTGTCT 539
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GAGGACCAAGGATCA-GATATCAAGAAAACATGGGATCCTATATTTGAGCAGCCTTGTCT 539
Query 540 TCAAACTACTGTGGATGAAGACCTCATTTTGCTCGAGAATCAACTTCCTTACTTCATCCT 599
|||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 540 TCAAACCACTGTGGATGAAGACCTCATTTTGCTCGAGAACCAGCTTCCTTACTTCATCCT 599
Query 600 CGAGAAACTCTTCGATCCAATCGTTCCAATACTCCGCCCAAACCAAACACTCCGCCAGAT 659
||||||||||||||||||||| |||||||||||||| ||| |||| ||||||||| || |
Sbjct 600 CGAGAAACTCTTCGATCCAATAGTTCCAATACTCCGTCCAGACCAGACACTCCGCAAGTT 659
Query 660 AGTCATCACTTACTTCAGATTCCAAGGTAATATCGGAGTTGACTCCAGATTTAGACATTT 719
| |||||||||||||||||||||||||||||||| ||| |||||||||||| | ||||||
Sbjct 660 AATCATCACTTACTTCAGATTCCAAGGTAATATCAGAGATGACTCCAGATTCAAACATTT 719
Query 720 CACTGATCTATTCCGATGTGTCCGCGTGGAGACACTTAGGCCAAAGATGCCAAAGAATAA 779
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 720 CACTGATCTATTCCGATGTGTCCGCGTGGAGACACTTAGGCCAAAGAAACCAAAGAATAA 779
Query 780 ATTCAGATATTTAGTTGGTCTGTTCCGATTTGTCCATTTGGGAACACACGGGTCA--AG- 836
|||||||||||||| |||||||||||||||| | | ||||||||||| |||||| ||
Sbjct 780 ATTCAGATATTTAGCTGGTCTGTTCCGATTTTTTCGCTTGGGAACACAGGGGTCATCAGG 839
Query 837 AGAATTAGAAAAGAGTCGTCCTCAAGAACATAAAGCTCTTCGCATGGAGAAGACACATGG 896
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 840 AGAATTAGAAAAGAGTCGTCCTCAAGAACATAAAGCTCTTCCCATGGAGAAGACACATGG 899
Query 897 GTCAGGAGAACCAACAAAGAGCACATTCAGATATATAGCTGATCTTTTCCGGTGTGTTCC 956
||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||
Sbjct 900 GTCAGGAGAACCAACAAAGAGCAAATTCAGATACATAGCTGATCTTTTCCGATGTGTTCC 959
Query 957 GATGGAGACACTAGGTTCGAAAAGAGAA---GAAAAGAGTCGT---CTTGAACGACTCAA 1010
|||||||||| ||| || ||||||||| |||||||||||| |||||||| |||||
Sbjct 960 CATGGAGACACAAGGGTCAAAAAGAGAAACAGAAAAGAGTCGTAGTCTTGAACGGCTCAA 1019
Query 1011 AACTCATCGCATGGAGGAGACGTCACATGGTCATGGCTCaaaaaaaaCAAAAGAGCTACC 1070
||||||||||||| |||||||||||||||||||||| ||||||||| ||||||| | ||
Sbjct 1020 AACTCATCGCATGAAGGAGACGTCACATGGTCATGGGTCAAAAAAACCAAAAGATCCCCC 1079
Query 1071 GATCATCAAACACATGTATAACGCGGCAAAGCTACAAAGTGCAGGAGTGAAGTTCAAGGC 1130
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1080 GATCATCAAACACATGTATAACGCGGCAAAGCTATACAGTGCAGGAGTGAAGTTCAAGGC 1139
Query 1131 CGTGACAGATGAGTTCTCGATAGATGTGACATTTGAGAATGGTTGTTTGAAGATACCTTG 1190
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1140 TGTGACAGATGAGTTCTCGATAGATGTGAAATTCGAGAATGGTTGTTTGAAGATACCTTG 1199
Query 1191 TTTGTGGGTTCCTGATGATGCAGAGATCACACTGAGAAATATAATGGCGCTTGAGCAATG 1250
||||||||||||||||||||| ||||||||| | ||||||||||||||||| ||||||||
Sbjct 1200 TTTGTGGGTTCCTGATGATGCGGAGATCACATTAAGAAATATAATGGCGCTAGAGCAATG 1259
Query 1251 CCATTACCCTTTCAAAGCATACGTCTGTAACTTCGTCAGTTTCTTGGATTTCCTCATCGA 1310
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1260 CCATTACCCTTTCAAAGCCTACGTCTGTAACTTCGTCAGTTTCTTGGATTTCCTCATAGA 1319
Query 1311 CACTGATAAAGACGTGGACTTACTCATGGAGAACGGG-AT-------A--------CTAA 1354
||||||||||||||| ||||| ||||||||||||||| || | ||||
Sbjct 1320 CACTGATAAAGACGTCGACTTGCTCATGGAGAACGGGTATGGTTTTGAAAGGGATACTAA 1379
Query 1355 ACAACTGGGGGGAGAAGAGTTCTGTGGCGGTGGCGGAGATGGTGAACACGCTATTTTCGG 1414
||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1380 ACAACTGGGGG-AGAAGAGTTCGGTGGCGGTGGCGGAGATGGTGAACACGCTCTTTTCGG 1438
Query 1415 GGGTGGTGGAGAGTCGTTCTTACTATGCTGGTATAGCGTCTAGAGTCAACGCCTATTATG 1474
| || ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1439 GCGTCGTGGAGAGTCGTTCTTACTATGCTGGTATTGCGTCAAGAGTCAACGCCTATTATG 1498
Query 1475 AAAATCCAGTCAACAGGTCACGCACCATCCTCGGACGCCAGTATTTCGGTAATCTATGGA 1534
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1499 AAAATCCAGTCAACAGGACACGCACCATCCTGGGACGCCAGTATTTCGGTAATCTATGGA 1558
Query 1535 GAGGTACCGCTACTGTCGCCGCTGCGCTTCTTTTGGTGATGACTCTTATCCAGACGGTGG 1594
||||||| |||||| |||| |||| |||||||||| |||||||| || ||||||||||||
Sbjct 1559 GAGGTACGGCTACTATCGCTGCTGGGCTTCTTTTGCTGATGACTTTTGTCCAGACGGTGG 1618
Query 1595 CTTCTATTCTTCAGGTT 1611
|||| ||| ||||||||
Sbjct 1619 CTTCGATTATTCAGGTT 1635
> Ahg349109 jgi|Araly1|349109|fgenesh1_pg.C_scaffold_5002501
Length=1332
Score = 370 bits (200), Expect = 2e-101
Identities = 378/463 (82%), Gaps = 16/463 (3%)
Strand=Plus/Plus
Query 8 GAAGGTTGAATCATGAACCGGACACGGTCCTTG-AGTTAAACGAATC-GACTCCTGGGAT 65
||| |||| ||| |||| || |||| ||| | |||| ||| || | | ||||||||||
Sbjct 86 GAATGTTGGATCCTGAATTGGGCACGATCC-AGAAGTTGAAC-AAACAGGCTCCTGGGAT 143
Query 66 GTGG-TGGTTTCCTACAAATCCTG-AGCATCGTTGCATCTACCGAGTCCCTGACCGTCTA 123
|||| | ||||| | |||| | | ||||| |||||||||| |||| ||| || || ||
Sbjct 144 GTGGCT-CTTTCCGAAAAAT-CAGAAGCATTGTTGCATCTATAGAGTGCCTAACAGTATA 201
Query 124 CGTCGTGTAAATCCAGAAGCTTACACGCCTCAATTACT-CCTCATTGGACCTCTTCACCA 182
||| | ||||| |||||||| || || ||||||||||| || |||| ||||| |||||
Sbjct 202 CGTAGAGTAAAACCAGAAGCATATACTCCTCAATTACTGATTC-TTGGTCCTCTCCACCA 260
Query 183 TTCTTTAAAATTTCAAGCTCTCAACTCTCGTGGAGATATCACAAACACAAAGTTAATGGG 242
||||| ||||| ||| |||||||| |||| ||||||||| ||| || |||||| ||||||
Sbjct 261 TTCTTCAAAATCTCATGCTCTCAAGTCTCTTGGAGATATTACAGACTCAAAGTCAATGGG 320
Query 243 CTACTTAAACATGGAGGAGCATAAGAAGATTTACCTTGC-GAGATTCTCA-GAA-AGGCT 299
||||||||||||||||||||||||||||||||||||||| || |||| || ||| || |
Sbjct 321 CTACTTAAACATGGAGGAGCATAAGAAGATTTACCTTGCCGA-ATTCGCACGAAGAG--T 377
Query 300 TGCAGGTCAAAAAACGATTGATGAACTCagaagaagaatcaaagaagaagaagaTATAAT 359
|| ||| |||| || || |||| | ||||||||| |||| ||||||| ||||| || ||
Sbjct 378 TGAAGGGGAAAAGACCATCGATGGATTCAGAAGAATAATCGAAGAAGATGAAGAGATGAT 437
Query 360 AAGGGCAAGCTACTCTGAGTCAACTGCCTGGATTGAATCTCCAAAGTTCGTGGACATGAT 419
|||||||||||||| || ||||| |||||||| |||||| ||| ||| |||||||||||
Sbjct 438 CAGGGCAAGCTACTCGGAATCAACGGCCTGGATAGAATCTGCAATGTTTGTGGACATGAT 497
Query 420 CCTACACGACTCTGTTTTCATAATAGAGTTCCTTTTAAGGAGT 462
|||||| ||||||||||| || |||||||| |||| ||||||
Sbjct 498 CCTACATGACTCTGTTTTTGTACTAGAGTTCATTTTGAGGAGT 540
> Ahg900382 jgi|Araly1|900382|Al_scaffold_0004_1032
Length=1131
Score = 243 bits (131), Expect = 5e-63
Identities = 211/249 (85%), Gaps = 8/249 (3%)
Strand=Plus/Plus
Query 57 TCCTGGGATGTGGTGGTTTCCTACAAATCCTGAGCA-TCGTTGCATCTACCGAGTCCCTG 115
||| || |||||| |||||||||||||||| ||| | | ||||||||||| ||||||| |
Sbjct 21 TCCAGGAATGTGGCGGTTTCCTACAAATCCCGAG-ATTTGTTGCATCTACAGAGTCCCAG 79
Query 116 ACCGTCTACGTCGTGTAAATCCAGAAGCTTACACGCCTCAATTACTCCTCATTGGACCTC 175
|| ||| ||| | |||||||||||||| || || |||||||||||||||||||||||||
Sbjct 80 ACTGTCCGCGTAGCGTAAATCCAGAAGCATATACACCTCAATTACTCCTCATTGGACCTC 139
Query 176 TTCACCATTCTTTAAAATTTCAAGCTCTCAACTCTCGTGGAGATATCACAAACACAAAGT 235
|||||||||||||||||| ||||||||||| ||| |||||||||||||| | |||| ||
Sbjct 140 TTCACCATTCTTTAAAATCTCAAGCTCTCATGTCTAGTGGAGATATCACATATACAATGT 199
Query 236 TAATGGGCTACTTAAACATGGAGGAGCATAAGAAGATTTACCTT-GCGAGA-TTCTCA-G 292
|| ||| |||||||||||||| ||| ||||||||||||| || ||| || ||| || |
Sbjct 200 CAACGGGATACTTAAACATGGAAGAGTGTAAGAAGATTTAC-TTAGCG-GAATTCACACG 257
Query 293 AAAGGCTTG 301
|| || |||
Sbjct 258 AAGGG-TTG 265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69857509330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5