BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G60480.1

Length=596
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939086 jgi|Araly1|939086|scaffold_503277.1                        573    5e-163


> Ahg939086 jgi|Araly1|939086|scaffold_503277.1
Length=396

 Score =  573 bits (310),  Expect = 5e-163
 Identities = 367/394 (93%), Gaps = 5/394 (1%)
 Strand=Plus/Plus

Query  12   TCGGAGAAAAGACGGCGAAAATGGAGGAACAGAAC---GCTGGAACCGGTGCCGGCGAAA  68
            |||| ||||||||||||||||||||||||| ||||   || ||||| |||||||| || |
Sbjct  3    TCGGGGAAAAGACGGCGAAAATGGAGGAACGGAACGAGGCCGGAACTGGTGCCGGAGAGA  62

Query  69   GCAGTTTGTTGGATGGATCAGGTCACTGGTGGTGGGCATTGGGAAGTGGAGCCCAAATCA  128
            ||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct  63   GCAGTTTGTTGGATGGATCAGCTCATTGGTGGTGGGCATTGGGAAGTGGAGCTCAAATCA  122

Query  129  TGTGGGGAATACGATTGATTCGGAGAGGTTACGCCGGCGACGTTCGATTAATGCCGCTCA  188
            |||||||| | ||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct  123  TGTGGGGAGTGCGATTGATTAGGAGAGGTTACGCCGGCGACGTTCGTTTAATGCCGCTCA  182

Query  189  AAGCCTTCGGTGTCGCATCACTCTTCGTCGGGTCGTTAGCCACCAGCTCCGTCGCATTAG  248
            ||||||||||||| || |||||||||||||| |||||||||||||||||||||||| |||
Sbjct  183  AAGCCTTCGGTGTGGCGTCACTCTTCGTCGGCTCGTTAGCCACCAGCTCCGTCGCAATAG  242

Query  249  TCCGCGCCACGGGGATCCACACGGTTCAAGATGCGATTGATCTTGGAGCCAACATTAGAA  308
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  243  TCCGCGCCACAGGGATCCACACGGTTCAAGATGCGATTGATCTTGGAGCCAACATTAGAA  302

Query  309  CCAATTTGGGGGTTACTCCTCAAATACCGGATAAGCAAATCACCGAGAGAGA--CGGGTG  366
            ||||||||||||||||||||||||||||||| ||| ||||||| ||||||||  ||| ||
Sbjct  303  CCAATTTGGGGGTTACTCCTCAAATACCGGAAAAGAAAATCACTGAGAGAGAGACGGATG  362

Query  367  ATTTATCATGAACAGATCGAGCTTGAAGCTCTAT  400
            ||||||||||||||||||||||||||||||||||
Sbjct  363  ATTTATCATGAACAGATCGAGCTTGAAGCTCTAT  396



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21824996908


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5