BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60490.1
Length=845
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486521 jgi|Araly1|486521|fgenesh2_kg.5__2513__AT3G60490.1 1098 0.0
> Ahg486521 jgi|Araly1|486521|fgenesh2_kg.5__2513__AT3G60490.1
Length=816
Score = 1098 bits (594), Expect = 0.0
Identities = 751/821 (91%), Gaps = 34/821 (4%)
Strand=Plus/Plus
Query 1 ATGGGAAAACAAATCAACATAGAGAGTAGTGCTACTCATCATCAAGACAATATTGTTTCC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGGGAAAACAAATCAACATAGAGAGTAGTGCTACTCATCATCAAGACAATAATGTTTCC 60
Query 61 GTTATAACAGCCACGA---T----ATC-C----TCCTCCTCCGTCGTAACGTCTTCGTCA 108
|||||||||||| ||| | | | ||||||||||| |||||||||||||||
Sbjct 61 GTTATAACAGCCTCGACCGTCGCCGCCACGATTTCCTCCTCCGTGGTAACGTCTTCGTCA 120
Query 109 GACTCTTGGTCTACCTCCAAAAGATCGTTAGTGCAAGACAATGAC-TCCGGAGGGAAACG 167
|| ||||||||||| |||||||| ||||||||||||||||||| | | |||||| |||||
Sbjct 121 GAGTCTTGGTCTACATCCAAAAGGTCGTTAGTGCAAGACAATGGCGT-CGGAGGAAAACG 179
Query 168 GCGGAAG---AGCAACGTTAGTGATGATAACAAGAATCCGACGTCGTATAGAGGAGTGAG 224
||||||| |||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 180 GCGGAAGATCAGCAACGTCAGCGATGATAATAAGAATCCGACGTCGTATAGAGGAGTGAG 239
Query 225 GATGAGGAGTTGGGGAAAATGGGTGTCGGAGATTAGAGAGCCGAGGAAGAAATCAAGAAT 284
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 GATGAGGAGTTGGGGGAAATGGGTGTCGGAGATTAGAGAGCCGAGGAAGAAGTCAAGAAT 299
Query 285 ATGGCTTGGCACTTATCCAACGGCAGAGATGGCAGCTCGTGCTCATGATGTGGCGGCTTT 344
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 ATGGCTTGGCACTTATCCAACGGCTGAGATGGCAGCTCGTGCTCATGATGTGGCGGCTTT 359
Query 345 AGCTATTAAAGGCAACTCCGGTTTTCTTAATTTCCCTGAATTATCCGGTTTGCTTCCTCG 404
||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||
Sbjct 360 AGCTATTAAAGGCAACTCCGGTTATCTCAATTTCCCTGACTTATCCGGTTTGCTTCCTCG 419
Query 405 TCCGGTTAGCTGCTCTCCTAAGGATATACAAGCTGCAGCTACCAAAGCCGCCGAAGCAAC 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCCGGTTAGCTGCTCTCCTAAGGATATACAAGCTGCAGCTACCAAAGCCGCCGAAGCAAC 479
Query 465 CACGTGGCACAAACCGGTTATCGATAAGAAATTAGC------------TGATGAGCTAAG 512
||||||||| |||||| ||||| || |||||||||| ||||||||||||
Sbjct 480 CACGTGGCAAAAACCGATTATCAATGAGAAATTAGCCGAACCGGAAGGTGATGAGCTAAG 539
Query 513 CCACTCTGAGTTGTTGTCTACCGCTCAGTCTTCGACTTCTAGTAGTTTCGTGTTTTCTTC 572
||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 540 CCACTCTGAATTGTTGTCTACGGCTCAGTCTTCGACTTCGAGTAGTTTCGTGTTTTCTTC 599
Query 573 GGACACGTCGGAGACTTCTAGTACGGACAAGGAAAGCAACGAAGAGACGGTGTTTGATTT 632
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 600 GGACACGTCGGAGACTTCTAGTACGGACAAGGAAAGCAACGAAGAGAAGGTGTTTGATTT 659
Query 633 GCCGGACCTTTTCACGGACGGGCTTATGAACCCAAACGATGCGTTTTGTTTATGCAACGG 692
|||||||||||||||||||||||| ||||||| |||||| |||||||| ||||||||||
Sbjct 660 GCCGGACCTTTTCACGGACGGGCTGATGAACCAAAACGACGCGTTTTGCTTATGCAACGA 719
Query 693 CACCTTTACGTGGCAGCTTTACGGAGAGGAGGATGTAGGG-TTCAGGTTTGAAGAGCCGT 751
||| |||||||||||||||||||||||||| ||| ||| || ||||||||||||||||
Sbjct 720 CACTTTTACGTGGCAGCTTTACGGAGAGGA---TGT-GGGATTAAGGTTTGAAGAGCCGT 775
Query 752 TTAATTGGCAAAATGACTAAACCGCCCTCCACTTGCTTACT 792
|||| |||||||||||||||||| |||||||||||||||||
Sbjct 776 TTAACTGGCAAAATGACTAAACCACCCTCCACTTGCTTACT 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31260791940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5