BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60500.1
Length=1636
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486522 jgi|Araly1|486522|fgenesh2_kg.5__2514__AT3G60500.2 2427 0.0
Ahg341414 jgi|Araly1|341414|fgenesh1_pg.C_scaffold_3001177 641 0.0
> Ahg486522 jgi|Araly1|486522|fgenesh2_kg.5__2514__AT3G60500.2
Length=1640
Score = 2427 bits (1314), Expect = 0.0
Identities = 1519/1613 (94%), Gaps = 33/1613 (2%)
Strand=Plus/Plus
Query 4 TTACATTTACTGTTGTTAAGGCCGAGAGATAGATAGaaaaaaaCATCTGTGCGATTTTGC 63
|||||| |||||||||||||||||||||||||||| ||||||| || ||| |||||| ||
Sbjct 29 TTACATGTACTGTTGTTAAGGCCGAGAGATAGATAAAAAAAAATATTTGTCCGATTTCGC 88
Query 64 CGCCTCTCCCTAAAATCTTTGGAGCTCCTTCGTAGTTAGCCGGAGGTGAAGTACAATAAA 123
|||| |||||||||||||||||||||||||| || |||||||||||| | |||
Sbjct 89 CGCCGCTCCCTAAAATCTTTGGAGCTCCTTCTTATTTAGCCGGAGGT---G------AAA 139
Query 124 AGAAAGAAGAAAGTCCAAGTGTCTCTTCTCATCTCTTTTCT-C--------C-AG---T- 169
|||| |||||||||||||||||||||||||||||||||||| | | || |
Sbjct 140 AGAAGGAAGAAAGTCCAAGTGTCTCTTCTCATCTCTTTTCTCCAATAGTTACTAGTCATA 199
Query 170 --AG-ATAATGGAGGGGAGATTGGCTAATATGTGGAGGTTGACTGTTAACGAAAGTAAAT 226
|| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 200 GCAGAATAATGGAGGGGAGATTGGCTAATATGTGGAGGTTGACTGTGAACGAGAGTAAAT 259
Query 227 TCGTGGAAACTGCGTTGCAATCTGAGCTCAGAGTAGATGGTCGTGGCCTTTATGATTATC 286
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 260 TCGTGGAAACTGCGTTGCAATCTGAACTCAGAGTTGATGGTCGTGGCCTTTATGATTACC 319
Query 287 GCAAGCTTACTATTAAGTTTGGCAAAGAATATGGTAGCTCGGAAGTTCAACTTGGTCAGA 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 GCAAGCTTACTATTAAGTTTGGCAAAGAATATGGTAGCTCGGAAGTTCAACTTGGTCAGA 379
Query 347 CTCATGTAATGGGTTTCGTGACTGCTCAGTTGGTACAACCTTACAAAGACAGACCTAATG 406
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 380 CTCATGTAATGGGTTTTGTGACTGCTCAGATGGTACAACCTTACAAAGACAGACCTAATG 439
Query 407 AAGGGTCTCTCTCGATCTTCACGGAATTTTCTCCAATGGCTGATCCGTCTTTTGAGCCTG 466
|||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 AAGGTTCTCTATCTATCTTCACGGAATTTTCTCCAATGGCTGATCCGTCTTTTGAGCCTG 499
Query 467 GTCGTCCTGGCGAATCTGCAGTGGAGTTGGGACGCATTATCGATCGTGGTCTAAGAGAAA 526
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 500 GTCGTCCTGGCGAATCTGCTGTGGAGTTGGGACGCATTATCGACCGTGGTCTAAGAGAAA 559
Query 527 GCCGTGCAGTAGATACAGAGTCACTCTGCGTTCTAGCTGGAAAGATGGTTTGGTCTGTTC 586
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 GCCGTGCGGTAGATACAGAGTCACTCTGCGTTCTAGCTGGAAAGATGGTTTGGTCTGTTC 619
Query 587 GCATTGACCTTCATATCTTGGACAATGGAGGGAACTTAGTTGATGCTGCAAATATTGCTG 646
| ||||| |||||| |||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 620 GTATTGATCTTCATGTCTTGGACAACGGAGGGAACTTGGTTGATGCTGCAAATATTGCTG 679
Query 647 CTTTAGCAGCTCTCATGACATTTAGGAGACCCGACTGCACTGTAGGAGGAGAGAATGGTC 706
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 680 CTTTAGCAGCTCTCATGACGTTTAGGAGACCCGACTGCACTGTAGGAGGAGAGAACGGTC 739
Query 707 AAGAAGTGATCATACATCCACTAGAGGAAAGGGAACCACTTCCATTGATAATACATCATC 766
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 740 AAGAAGTGATCATACATCCACCAGAGGAAAGGGAACCACTTCCATTGATAATACATCATC 799
Query 767 TCCCAATAGCCTTCACGTTTGGATTTTTTAATAAAGGCAACATTGTGGTGATGGACCCAA 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 TCCCAATAGCCTTCACGTTTGGATTTTTTAATAAAGGCAACATTGTGGTGATGGACCCAA 859
Query 827 CTTATGTTGAAGAAGCAGTTATGTGTGGGAGAATGACTGTGACAGTTAATGCCAATGGCG 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 CTTATGTTGAAGAAGCAGTTATGTGTGGGAGAATGACTGTGACAGTTAATGCCAATGGCG 919
Query 887 ATATATGCGCAATCCAAAAACCGGGGGAAGAAGGCGTGAACCAGAGTGTAATCCTTCATT 946
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 920 ATATATGTGCAATCCAAAAACCGGGGGAAGAAGGCGTGAACCAGAGTGTAATTCTTCATT 979
Query 947 GCCTGCGTCTTGCTTCTTCAAGAGCTGCTGCAACAACAAAGATCATTAGAGAAGAAGTTG 1006
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 980 GCCTGCGTCTTGCTTCTTCACGAGCTGCTGCAACAACAAAGATCATTAGAGAAGAAGTTG 1039
Query 1007 AAGCATATAACTGTGAGAGAAGCTTACAGAAGGTGAAGCGACATCCCACTTTGGCTAAAT 1066
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 AAGCATATAACCGTGAGAGAAGCTTACAGAAGGTGAAGCGACATCCCACTTTGGCTAAAT 1099
Query 1067 CTGAAGTTTCTGGACCTACTGTAGCTGTGAAGGAGGAACATAGGAAGTCCTCAGATCAGG 1126
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1100 CTGAAGTTTCTGGACCTACTGTAGCTGTGAAGGAGGAATATAGGAAGTCCTCAGATCAGG 1159
Query 1127 AAAGAGCTGCAGAGATATCTCGAGAACATGTTGAAAGACTAAAGCTCTCTACGGAGGAAG 1186
||| | |||||||||||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct 1160 AAAAATCTGCAGAGATATCTCGGGAACATGTTGAAAGACTAAAGCTCTCTCCAGAGGAAC 1219
Query 1187 TAAGAAGCAGTAAGGAAGAAGAAGCTGCCAATTTCAAAGGCGGTCCCTCAAATTGGGACC 1246
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1220 TAAGAAGCAGTAAGGAACAAGAAGCTGCCAATTTTAAAGGCGGTCCCTCAAATTGGGACC 1279
Query 1247 CTTACTCAGAAGCTATGGATGTTGATTCACTGAAAGTTTCTCTTGCTTCAAGAGGGGATC 1306
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1280 CTTACTCAGAAGCTATGGATGTTGATTCACTGAAAGTTTCTCTTGCTTCAAAAGCGGATT 1339
Query 1307 CCGTTACTAAGTCATCGAGCACGAAGAAAATGAACGGCTCTGGAAATGCGCAGAAGGTTG 1366
|| |||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||
Sbjct 1340 CCATTACTAAGTCATCGAGCAAGAAGAAAATGAATGGCTCTGGAAATGCGCAGAAGGATG 1399
Query 1367 GTGTTGAGATTTCAGTTGAGGAAGTAACCGGAGAATTAGGGAAGAAGGATACAAAACACA 1426
| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1400 ACGGTGAGATTTCAGCTGAGGAAGTAACCGGAGATTTAGGGAAGAAGGATACAAAACACA 1459
Query 1427 AGGATGGAGAAATGACACTTAAAGATGCTGTCAAACCTAAAAAGAAGCGGAAAAACAAAA 1486
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1460 AGGATGGAGAGATGACACTTAAAGATGCTGTCAAACCTAAAAAGAAGCGGAAAAACAAAA 1519
Query 1487 GCTGAGTTAAAGCATTTTCCCGATCACTCGT--ACTTTTCTTCTTCCCTTGAAACTCAAG 1544
|||||||||| |||||||||||||||||| | ||||| |||||||||||||||||||||
Sbjct 1520 GCTGAGTTAATGCATTTTCCCGATCACTCTTTTACTTT-CTTCTTCCCTTGAAACTCAAG 1578
Query 1545 ACTATAGACGGTTT-ATGGTCAATTGTATCTGAAAAAAGTCAAAAGTTTTGTT 1596
|||| ||||||||| | ||||||||||||||||||| ||||| |||||||||
Sbjct 1579 ACTAGAGACGGTTTTA-GGTCAATTGTATCTGAAAA--GTCAAGAGTTTTGTT 1628
> Ahg341414 jgi|Araly1|341414|fgenesh1_pg.C_scaffold_3001177
Length=885
Score = 641 bits (347), Expect = 0.0
Identities = 430/470 (91%), Gaps = 6/470 (1%)
Strand=Plus/Plus
Query 617 GGAACTTAGTTGATGCTGCAAATATTGCTGCTTTAGCAGCTCTCATGACATTTAGGAGAC 676
||||||| ||||||||||||||||||||||||||||| || ||| ||||||| |||||||
Sbjct 404 GGAACTTGGTTGATGCTGCAAATATTGCTGCTTTAGCGGCACTCTTGACATTCAGGAGAC 463
Query 677 CCGACTGCACTGTAGGAGGAGAGAATGGTCAAGAAGTGATCATACATCCACTAGAGGAAA 736
| || |||||||||||||| ||||| |||||||||||||||||||||||| || ||||
Sbjct 464 CTGATTGCACTGTAGGAGGGGAGAACAGTCAAGAAGTGATCATACATCCACCCGAAGAAA 523
Query 737 GGGAACCACTTCCATTGATAATACATCATCTCCCAATAGCCTTCACGTTTGGATTTTTTA 796
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 GGGAACCACTTCCGTTGATAATACATCATCTCCCAATAGCCTTCACGTTTGGATTTTTTA 583
Query 797 ATAAAGGCAACAT-TGTGGTGATGGACCCAACT-TATGTTGAAGAAGCAGTTATGTGTGG 854
||||||||| || | |||||||||||||||| | |||||||||||| ||||||| |||
Sbjct 584 ATAAAGGCAGTATCT-TGGTGATGGACCCAACAGT-TGTTGAAGAAGCTGTTATGTCTGG 641
Query 855 GAGAATGACTGTGACAGTTAATGCCAATGGCGATATATGCGCAATCCAAAAACCGGGGGA 914
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||
Sbjct 642 GAGAATGACTGTGACAGTCAATGCCAATGGCGATATATGCGCAATCCAGAAACCAGGAGA 701
Query 915 AGAAGGCGTGAACCAGAGTGTAATCCTTCATTGCCTGCGTCTTGCTTCTTCAAGAGCTGC 974
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 702 AGAAGGCGTGAACCAGAGTGTAATCCTTCATTGCCTGCGTCTTGCTTCCTCAAGAGCTGC 761
Query 975 TGCAACAACAAAGATCATTAGAGAAGAAGTTGAAGCATATAACTGTGAGAGAAGCTTACA 1034
||||||||||||||| |||||||||| |||||||||||| ||| ||||||| |||| |||
Sbjct 762 TGCAACAACAAAGATAATTAGAGAAGCAGTTGAAGCATACAACCGTGAGAGGAGCTCACA 821
Query 1035 GAAGGTGAAGCGACATCCCACTTTGGCTAAATCTGAAGTTTCTGG-ACCT 1083
|||||||| |||||||| ||||||||||| |||||||||| ||| ||||
Sbjct 822 GAAGGTGATGCGACATCATACTTTGGCTAAGTCTGAAGTTT-TGGGACCT 870
Score = 521 bits (282), Expect = 5e-147
Identities = 365/406 (90%), Gaps = 2/406 (0%)
Strand=Plus/Plus
Query 175 ATGGAGGGGAGATTGGCTAATATGTGGAGGTTGACTGTTAACGAAAGTAAATTCGTGGAA 234
||||| ||||| ||| ||||||||||||||||||||| || || |||||||||||||||
Sbjct 1 ATGGATGGGAGGTTGAATAATATGTGGAGGTTGACTGTGAATGAGAGTAAATTCGTGGAA 60
Query 235 ACTGCGTTGCAATCTGAGCTCAGAGTAGATGGTCGTGGCCTTTATGATTATCGCAAGCTT 294
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 61 TCTGCGTTGCAATCTGAGCTCAGAGTCGATGGTCGTGGCCTTTATGATTACCGCAAGCTT 120
Query 295 ACTATTAAGTTTGGCAAAGAATATGGTAGCTCGGAAGTTCAACTTGGTCAGACTCATGTA 354
||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 121 ACTATTAAGTTTGGCAAGGAATATGGTAGCTCAGAAGTTCAACTAGGTCAGACTCATGTA 180
Query 355 ATGGGTTTCGTGACTGCTCAGTTGGTACAACCTTACAAAGACAGACCTAATGAAGGGT-C 413
|||| ||| |||||||||||| | |||||||||||||||||||||||||||||||| | |
Sbjct 181 ATGGCTTTTGTGACTGCTCAGCTAGTACAACCTTACAAAGACAGACCTAATGAAGGCTCC 240
Query 414 TCTCTCGATCTTCACGGAATTTTCTCCAATGGCTGATCCGTCTTTTGAGCCTGGTCGTCC 473
| |||| ||||||||||| |||||||||||||||||||| || |||||||||| || |||
Sbjct 241 T-TCTCTATCTTCACGGAGTTTTCTCCAATGGCTGATCCATCGTTTGAGCCTGTTCATCC 299
Query 474 TGGCGAATCTGCAGTGGAGTTGGGACGCATTATCGATCGTGGTCTAAGAGAAAGCCGTGC 533
||| |||||||| || ||| |||| || ||||| || |||| ||||||||||||||||||
Sbjct 300 TGGTGAATCTGCTGTTGAGCTGGGCCGTATTATAGACCGTGCTCTAAGAGAAAGCCGTGC 359
Query 534 AGTAGATACAGAGTCACTCTGCGTTCTAGCTGGAAAGATGGTTTGG 579
||||||||||||||| ||||| ||| | ||||||||| |||| |||
Sbjct 360 AGTAGATACAGAGTCGCTCTGTGTTTTTGCTGGAAAGCTGGTCTGG 405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61325294450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5