BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60510.3
Length=1573
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486525 jgi|Araly1|486525|fgenesh2_kg.5__2517__AT3G60510.1 1520 0.0
> Ahg486525 jgi|Araly1|486525|fgenesh2_kg.5__2517__AT3G60510.1
Length=1441
Score = 1520 bits (823), Expect = 0.0
Identities = 918/961 (96%), Gaps = 18/961 (2%)
Strand=Plus/Plus
Query 3 AGCTGATAAACTCGCCACGACACGAAAACGGAAAATCGATCCGCCATGTTTGATTTTGCC 62
||| ||||||||||||||| || || ||||||||||||||||| ||||||||||||
Sbjct 33 AGCCGATAAACTCGCCACG--AC----AC-GAAAATCGATCCGCCATTTTTGATTTTGCC 85
Query 63 AAATAAGAGAGTAGAGTTCTCTAGTTTTGAACGAAGAAGAAGACGAAAGAAGAATGCATA 122
|||| | ||||||||||||||||||||||||| |||| | | | ||||||||||||||
Sbjct 86 AAAT-A-AGAGTAGAGTTCTCTAGTTTTGAAC---GAAG-A-A-G-AAGAAGAATGCATA 136
Query 123 ACGCGAA-GGGATTGTTGGGACGAATCGTTCGAGATAAGCTATGGAGATTTGGTTATCGG 181
||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 137 ACGCGAATGGG-TTGTTGGGACGAATCGTTAGAGATAAGCTATGGAGATTTGGTTATCGG 195
Query 182 AGGAGCTTGTGCTCGCTTAAATTGACTTCCGAGGATCTTGATTACCAGGTTCTCGTTGAA 241
|||||||| || ||||| ||| | ||| |||||||||||||||||||||| |||||||||
Sbjct 196 AGGAGCTTTTGTTCGCTCAAAGTCACTCCCGAGGATCTTGATTACCAGGTACTCGTTGAA 255
Query 242 GGAAGTGGTTGTTCCCGTACTGCGATTCTCAATAGACCACCTGCTCTCAATGCACTCACC 301
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 256 GGAAGTGGTTGTTCCCGTACTGCGATTCTCAATAGACCACCTGCTCTCAATGCGCTCACC 315
Query 302 ACTCACATGGGATATAGGTTGCAGAAACTTTATAAGAATTGGGAAGAAGATCCAAATATT 361
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 316 ACTCACATGGGATATAGGTTGCAGAAGCTTTATAAGAATTGGGAAGAAGATCCAAATATC 375
Query 362 GGGTTTGTGATGATGAAGGGGAGTGGAAGGGCATTTTGTGCTGGTGGTGATATTGTGTCT 421
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 376 GGGTTTGTGATGATGAAGGGGAGTGGAAGGGCATTTTGTGCTGGTGGTGATATTGTTTCT 435
Query 422 CTCTACCATTTAAGAACGAGAGGTAGCCCGGATGCTATTAGGGAGTTTTTCTCGAGTTTG 481
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 CTCTACCATTTAAGAAAGAGAGGTAGCCCGGATGCTATTAGGGAGTTTTTCTCGAGTTTG 495
Query 482 TATAGTTTTATATACTTGCTAGGCACATATCTAAAGCCACATGTGGCAATTCTTAACGGT 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 TATAGTTTTATATACTTGCTAGGCACATATCTAAAGCCACATGTGGCAATTCTTAACGGT 555
Query 542 GTTACTATGGGAGGCGGAACTGGAGTTTCGATACCTGGGACATTTCGTGTAGCTACTGAT 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 GTTACTATGGGAGGCGGAACTGGAGTTTCGATACCTGGGACATTTCGTGTAGCTACTGAT 615
Query 602 AGAACTATTTTTGCTACCCCTGAAACAATCATCGGTTTTCATCCTGATGCTGGTGCTTCT 661
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 616 AGAACTATTTTTGCTACCCCTGAAACAATCATCGGTTTTCATCCTGATGCTGGCGCTTCT 675
Query 662 TTTAACCTCTCCCACTTACCTGGTCGCTTAGGGGAGTATCTGGGTCTGACTGGGTTAAAG 721
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 676 TTTAACCTCTCTCACTTACCTGGTCGCTTAGGGGAGTATCTGGGTCTGACTGGGCTAAAG 735
Query 722 CTCAGTGGGGCAGAAATGTTGGCATGTGGCCTTGCTACACATTATATTAGAAGTGAGGAG 781
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 736 ATCAGTGGGGCAGAAATGTTGGCATGTGGCCTTGCGACACATTATATTAGAAGTGAGGAG 795
Query 782 GTTCCTGTAATGGAAGAACAGCTCAAGAAGCTGCTCACTGATGATCCTTCTGTTGTTGAG 841
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 796 GTTCCTGTAATGGAAGAACAGCTCAAGAAGTTGCTCACTGATGATCCTTCTGTTGTTGAG 855
Query 842 TCATGCTTAGAAAAATGTGCAGAAGTTGCCCATCCGGAAAAGACTGGTGTTATTCGTAGG 901
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 TCATCCCTAGAAAAATGTGCAGAAGTTGCCCATCCGGAAAAGACTGGTGTTATTCGTAGG 915
Query 902 ATCGATTTACTTGAAAAATGCTTTAGCCATGACACAGTAGAAGAAATTATTGATTCTTTG 961
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 916 ATTGATTTACTTGAAAAATGCTTCAGCCATGACACAGTAGAAGAAATTATTGATTCTTTG 975
Query 962 G 962
|
Sbjct 976 G 976
Score = 676 bits (366), Expect = 0.0
Identities = 391/403 (97%), Gaps = 1/403 (0%)
Strand=Plus/Plus
Query 1036 GGAAATCGAGGCTAGTAGAAGAAAAGATACATGGTGCATTACGACTCTACGTAGACTTAA 1095
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 GGAAATCGAGGCTGGTAGAAGAAAAGATACATGGTGCATTACGACTCTACGTAGACTTAA 1034
Query 1096 AGAAAGCTCACCGTTATCTTTGAAGGTGGCATTGAGATCTATCCGGGAAGGAAGATTACA 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 AGAAAGCTCACCGTTATCTTTGAAGGTGGCATTGAGATCTATCCGGGAAGGAAGATTACA 1094
Query 1156 AACACTTGACCAATGCTTAATCCGAGAGTACAGAATGTCGCTACAAGGATTAATCGGGCC 1215
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1095 AACACTTGACCAATGCTTAATCCGAGAGTATAGAATGTCGCTACAAGGATTAATCGGGCC 1154
Query 1216 AATGTCCGGCAATTTTTGTGAGGGAGTACGAGCTCGATTGATAGACAAGGATGAAGCACC 1275
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1155 AATGTCCGGCAATTTTTGTGAGGGAGTACGAGCTCGATTGATAGACAAGGACGAAGCACC 1214
Query 1276 AAAGTGGGATCCACCGAGCTTGGAGAAAGTATCAGAGGACATGGTTGATGATTACTTCTG 1335
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1215 AAAGTGGGATCCACCGAGCTTGGAGAAAGTATCAGAGGACATGGTTGATGATTACTTCTC 1274
Query 1336 TGCCTTGACTCCCACGGAACCTGATCTTGACCTTCCTGTCAAACTCAGAGAAAGCATTTA 1395
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1275 TGCCTTGACTCCCACGGAACCTGATCTTGAGCTTCCTGTCAAACTCAGAGAAAGCATTTA 1334
Query 1396 GTTTCTTGATGaaaaaaaaaaTCAACTTGGCTAACATCAGTCC 1438
|||||||| ||||| ||| |||| ||||||||||||| |||
Sbjct 1335 GTTTCTTGGTGAAACAAACT-TCAAATTGGCTAACATCACTCC 1376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58925609015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5