BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G60520.1

Length=723
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939093 jgi|Araly1|939093|scaffold_503284.1                        706    0.0  


> Ahg939093 jgi|Araly1|939093|scaffold_503284.1
Length=430

 Score =  706 bits (382),  Expect = 0.0
 Identities = 414/430 (96%), Gaps = 0/430 (0%)
 Strand=Plus/Plus

Query  93   GCTAATTTAAGGAAACAAAAATGGTGGATCTTGAAAGAAGAGTGTGTTGCATGTGTGGTG  152
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  1    GCTAATTTAAGGAAACAAAAATGGTAGATCTTGAAAGAAGAGTGTGTTGCATGTGTGGTG  60

Query  153  ATGTGGGATTCTTCGACAAGCTCTTTCACTGCAGCAAGTGCCTTAATCGCTTTCAACACT  212
            ||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct  61   ATGTGGGTTTCTTCGACAAGCTCTTTCATTGCAGCAAGTGCCTAAATCGCTTTCAACACT  120

Query  213  CGTACTGTAGTAGCTATTACAAAGAGCAAGCTGATCCAATCAAGATCTGTGATTGGTGTC  272
            ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  121  CGTACTGTAGTAGTTATTACAAAGAGCAAGCTGATCCAATCAAGATCTGCGATTGGTGTC  180

Query  273  AGTGTGAAGCAAAAAGTCGAACCGGAGCAAAACACGGTGTTAATGGTGGATCGTCTAAGA  332
            ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AGTTTGAAGCAAAGAGTCGAACCGGAGCAAAACACGGTGTTAATGGTGGATCGTCTAAGA  240

Query  333  GATCGTACCGGTCGGAATATTCTTCACCTCATCACCAAATCAAACAGCAAGAGATTAACC  392
            |||||||| ||||||||||||||||| |||||||||||||||| ||||||||| ||||||
Sbjct  241  GATCGTACAGGTCGGAATATTCTTCAGCTCATCACCAAATCAAGCAGCAAGAGGTTAACC  300

Query  393  AAACCACTAGTAGTAGTATTCCTCCAGCAGCCGACAAGGGAAAAACTGGCGTGCCTTCTC  452
            ||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct  301  AAAACACTAGTAGTAGTATTCCTCCAGCAGCCGACAAGGGTAAAACCGGCGTGCCTTCTC  360

Query  453  CTAGACCGGCCACTCGTAGGTACAAGCTTCTCAAGGATGTTATGTGTTAGTAATGTTTTC  512
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  CTAGACCGGCCACTCGCAGGTACAAGCTTCTCAAGGATGTTATGTGTTAGTAATGTTTTC  420

Query  513  GAAATAACCA  522
            ||||||||||
Sbjct  421  GAAATAACCA  430



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26609796066


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5