BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60530.1
Length=1096
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486528 jgi|Araly1|486528|fgenesh2_kg.5__2520__AT3G60530.1 1447 0.0
> Ahg486528 jgi|Araly1|486528|fgenesh2_kg.5__2520__AT3G60530.1
Length=1045
Score = 1447 bits (783), Expect = 0.0
Identities = 925/989 (94%), Gaps = 27/989 (3%)
Strand=Plus/Plus
Query 1 GTCTCGGTGCATGCTAACTCTATGCACG-T-TCTCATCTTCGTCTCTTTCCTCACTTACA 58
||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1 GTCTCGGTGCATGTTAACTCTATGCACGTTCTCTCATCTTCGTCTCTTTCCTCACTTACA 60
Query 59 CTAATTCTCTCTCTCTATATTAAACCTCTGAACCAGTGACCACATACATACTCAGTAAGC 118
|||| |||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct 61 CTAACTCTCTCTCTCTATATTAAACCTCTGAACCAGTGA-C-C--ACATACTCAGT---- 112
Query 119 GAGTCCGAGTCAACAATGGACGTCTACGGCATGTCTTCACCGGACTTGCTTCGTATCGAC 178
||| ||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 113 GAG--CGAGTTAACAATGGACGTATACGGCATGTCGTCACCGGACTTGCTTCGTATCGAC 170
Query 179 GACCTTCTCGATTTCTCCAACGACGAAATCTTCTCTTCCTC---TTCC---ACCGTCACT 232
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 171 GACCTTCTCGATTTCTCCAACGACGAAATCTTCTCTTCCTCCACTTCCTCCACCGTCACT 230
Query 233 TCCTCCGCCGCTTCCTCCGCCGCTTCTTCCGAAAACCCTTTCAGCTTTCCTTCTTCCACC 292
|||||||||||||||||||||| |||||||| |||||||||| ||| ||||||||| ||
Sbjct 231 TCCTCCGCCGCTTCCTCCGCCGGATCTTCCGAGAACCCTTTCAACTTCCCTTCTTCCGCC 290
Query 293 TACACTTCTCCTACTCTCCTCACCGACTTCACTCACGATCTCTGCGTTCCCAGTGACGAC 352
|||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 291 TACACTTCTCCTCCTCTCCTCACCGATTTCACTCACGATCTCTGTGTTCCCAGTGACGAC 350
Query 353 GCAGCTCATCTCGAATGGTTATCGCGATTCGTTGACGATTCATTCTCCGATTTCCCAGCA 412
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 351 GCAGCTCATCTCGAATGGTTATCACGATTTGTTGACGATTCATTCTCCGATTTCCCAGCG 410
Query 413 AATCCTTTAACCATGACCGTTAGACCCGAGATTTCATTCACCGGAAAACCTAGAAGTCGC 472
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 411 AATCCTTTAACCATGACCGTTAGACCTGAGATTTCATTCACCGGAAAACCCAGAAGTCGC 470
Query 473 CGATCAAGAGCACCAGCACCTTCCGTAGCTGGAACTTGGGCTCCGATGTCTGAATCAGAG 532
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||
Sbjct 471 CGATCAAGAGCACCAGCACCATCCGTAGCTGGAACTTGGGCTCCGATGCCTGAATCCGAG 530
Query 533 CTTTGTCACTCCGTCGCTAAACCTAAACCGAAGAAAGTCTACAACGCTGAATCGGTTACG 592
|||||||||||||||||||||||||||||| |||||| |||||||| ||||| |||||
Sbjct 531 CTTTGTCACTCCGTCGCTAAACCTAAACCGGCGAAAGTATACAACGCCGAATCAATTACG 590
Query 593 GCGGATG--G-AGC-G-AGG----CGGTGCACGCACTGTGCCTCGGAGAAAACGCCACAG 643
||||||| | || | ||| |||||||||||||| |||||||||||||||||||||
Sbjct 591 GCGGATGTAGGAGGAGGAGGGAGGCGGTGCACGCACTGCGCCTCGGAGAAAACGCCACAG 650
Query 644 TGGAGAACTGGACCGCTTGGACCTAAAACACTTTGTAACGCTTGTGGAGTTCGTTACAAA 703
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 651 TGGAGAACGGGACCGCTTGGACCTAAAACGCTTTGTAACGCTTGTGGAGTTCGTTACAAA 710
Query 704 TCAGGGAGGCTTGTACCGGAATACAGACCGGCGTCGAGTCCGACGTTTGTATTGACTCAG 763
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 711 TCAGGGAGGCTTGTACCGGAATACAGACCGGCTTCGAGTCCGACGTTTGTGTTGACTCAG 770
Query 764 CATTCGAACTCTCATCGGAAAGTTATGGAGCTCCGGCGACAGAAGGAACAACAAGAATCT 823
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 CATTCGAACTCTCACCGGAAAGTTATGGAGCTCCGGCGACAGAAGGAACAACAAGAATCT 830
Query 824 TGCGTTCGAATTCCGCCGTTTCAGCCGCAGTAAATTTGGGGGTTTTCTTTTCAAGGGTTT 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 TGCGTTCGAATTCCGCCGTTTCAGCCGCAGTAAATTTGGGGGTTTTCTTTTCAAGGGTTT 890
Query 884 TTGTGATTTGGTGACGTGTCGTAATCTTAACGGTGATGATCACGTGACCGACGGGAGGGG 943
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 891 TTGTTATTTGGTGACGTGTCGTAATCCTAACGGTGATGATCACGTGACCGACGGGAGGGG 950
Query 944 TTAAGGACTTAATTATCAGTATTAGTTTA 972
|||||||||||||||||||||||||||||
Sbjct 951 TTAAGGACTTAATTATCAGTATTAGTTTA 979
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40829644107
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5