BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60540.1
Length=481
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939095 jgi|Araly1|939095|scaffold_503286.1 390 4e-108
Ahg483640 jgi|Araly1|483640|fgenesh2_kg.4__2700__AT2G45070.4 248 3e-65
> Ahg939095 jgi|Araly1|939095|scaffold_503286.1
Length=283
Score = 390 bits (211), Expect = 4e-108
Identities = 262/286 (92%), Gaps = 6/286 (2%)
Strand=Plus/Plus
Query 45 AAAAACAAGAAGTGAAGCAAAAATGGTTGGTGGTGGAGCTCCACAGAGAGGAAGTGCAGC 104
|||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 AAAAACAAAAAGTGAAGAAAAAATGGTTGGAGGTGGAGCTCCACAGAGAGGAAGTGCAGC 60
Query 105 TGCAACTGCAAGCATGAGGAGGAGGAAGCCTGCTGGTGGCAGCAGCAGCGCCGGTGGTGG 164
|||||||||||| ||||| ||||||||| | ||||||| || || || ||||| |
Sbjct 61 TGCAACTGCAAGTATGAGAAGGAGGAAG-C--CTGGTGGTAG-TGC--CGGTGGTGGAGC 114
Query 165 AGCTGGAACAATGCTTCAGTTCTACACAGACGACGCGCCTGGTCTCAAGATATCTCCAAA 224
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 115 AGCTGGAACAATGCTTCAGTTCTACACAGACGACGCGCCTGGTCTCAAGATTTCTCCAAA 174
Query 225 TGTTGTTCTTATCATGAGCATTGGTTTCATTGCTTTTGTAGCTGTTCTTCATGTCATGGG 284
|||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 175 TGTTGTTCTTATCATGAGTATTGGTTTCATTGCCTTTGTTGCTGTTCTTCATGTCATGGG 234
Query 285 TAAGCTCTATTTTGTCAAGAGCAAATGAAGACGATACATACAGAGC 330
||||||||||||||||||||||||||||||| |||||| ||| |||
Sbjct 235 TAAGCTCTATTTTGTCAAGAGCAAATGAAGAGGATACAAACAAAGC 280
> Ahg483640 jgi|Araly1|483640|fgenesh2_kg.4__2700__AT2G45070.4
Length=489
Score = 248 bits (134), Expect = 3e-65
Identities = 246/297 (83%), Gaps = 20/297 (7%)
Strand=Plus/Plus
Query 19 ATCAGAAATTG-AAGCCGAATCA-GTTGA-AAAACAAGAAGTGAAGCAAAAATGGTTGGT 75
||||||| ||| ||||||||||| || || |||||||| | ||| |||||| |||
Sbjct 87 ATCAGAATTTGTAAGCCGAATCAGGTAGAGAAAACAAG-A---AAG----AATGGTGGGT 138
Query 76 GGTGGAGCTCCACAGAGAGGAAGTGCAGCTGCAACTGCAAGCATGAGGAGGAGGAAGCCT 135
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 139 AGTGGAGCTCCACAGAGAGGAAGTGCAGCTGCAACTGCAAGCATGCGTAGGAGGAAGCCG 198
Query 136 GC---TGGTG--GCAGCAGCAGC-GCC---GGTGGTGGAGCTGGAACAATGCTTCAGTTC 186
|| ||||| | | || || ||| ||||||| ||||||| | ||||||||||||
Sbjct 199 GCAAGTGGTGCTGGTGGAGGAGGAGCCTCTGGTGGTGCAGCTGGATCCATGCTTCAGTTC 258
Query 187 TACACAGACGACGCGCCTGGTCTCAAGATATCTCCAAATGTTGTTCTTATCATGAGCATT 246
||||| || ||||| || ||||| ||||| || || |||||||| ||||||||||||||
Sbjct 259 TACACCGATGACGCACCCGGTCTTAAGATCTCCCCCAATGTTGTCCTTATCATGAGCATC 318
Query 247 GGTTTCATTGCTTTTGTAGCTGTTCTTCATGTCATGGGTAAGCTCTATTTTGTCAAG 303
|||||||||||||| || || ||||||||||| ||||| |||||||| |||||||||
Sbjct 319 GGTTTCATTGCTTTCGTCGCGGTTCTTCATGTTATGGGCAAGCTCTACTTTGTCAAG 375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17437104173
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5