BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60550.1
Length=734
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486531 jgi|Araly1|486531|fgenesh2_kg.5__2523__AT3G60550.1 1079 0.0
Ahg483641 jgi|Araly1|483641|fgenesh2_kg.4__2701__AT2G45080.1 560 5e-159
> Ahg486531 jgi|Araly1|486531|fgenesh2_kg.5__2523__AT3G60550.1
Length=707
Score = 1079 bits (584), Expect = 0.0
Identities = 642/671 (96%), Gaps = 0/671 (0%)
Strand=Plus/Plus
Query 34 AAACATCAATGGCCGTTTCGAATTCTTTAACAATCTCTCCGAGGAAACTCCGGTCTGATC 93
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 AAACATCAATGGCGGTTTCGAATTCTTTAACAATCTCTCCGAGGAAACTCCGGTCTGATC 75
Query 94 TTTACTCATACTCATACCAAAACAATTCCAAGACACCTCTGGTTATCTCTGTTCTATCGT 153
| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 76 TCTACTCATACTCATACCAAAACAATTCCGAGACACCTCTGGTTATCTCTGTTTTATCGT 135
Query 154 CACTGATTGATCGAACTCTGACTCGAAACGAGAGGATTAGCCGGAGAGCTTTGCCTTCCT 213
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 CACTGATCGATCGAACTCTGACTCGAAACGAGAGGATTAGCCGGAGAGCTTTGCCTTCCT 195
Query 214 CCGGCGCCGGTGGCAAAACTCAGATCTTTGATTGCCGAGAAATCCCTGATATGACCATCC 273
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 196 CCGGTGCCGGTGGCAAAACTCAGATCTTTGATTGCCGTGAAATCCCTGATATGACAATCC 255
Query 274 AGTCATACCTAGGGAGAATTTTCCGGTACACTAAAGCCGGTCCTTCGGTTTACGTGGTGG 333
| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 256 AATCGTACCTAGAGAGAATTTTCCGGTACACTAAAGCCGGTCCTTCGGTTTACGTGGTAG 315
Query 334 CTTATGTCTACATTGACCGGTTCTGTCAAACCAATCCCGGTTTTAGAATCAGTCTCACTA 393
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 316 CTTATGTCTACATTGACCGGTTCTGTCAAACCAATCCTAGTTTTAGAATCAGTCTCACCA 375
Query 394 ATGTACATCGTCTACTCATCACTACCATCATGATCGCTTCTAAATACGTCGAAGATTTGA 453
||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 376 ATGTACATCGTCTCCTCATCACCACCATCATGATCGCTTCTAAATACGTCAAAGATTTGA 435
Query 454 ACTATAGGAATTCATATTTTGCGAAAGTAGGTGGACTAGAGACAGAGGATTTGAATAAGT 513
| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 436 ATTACAGGAATTCATATTTTGCGAAAGTAGGTGGATTAGAGACAGAGGATTTGAATAAGT 495
Query 514 TAGAGTTAGAGTTTCTGTTCTTGATGGGATTTAAGCTACATGTGAATGTGAGTGTGTTCG 573
||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||
Sbjct 496 TAGAGTTAGAGTTTCTGTTCTTGATGGGATTCAAGCTACATGTTAATGTGACTGTGTTCG 555
Query 574 AGAGTTATTGTTGTCATCTTGAAAGAGAGGTTAGCTTTGGAGGAGGTTATCAGATCGAGA 633
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
Sbjct 556 AGAGTTATTGTTGTCATCTTGAAAGAGAGGTTAGCATTGGAGGAGGTTATCAAATCGAAA 615
Query 634 AGGCATTGCGTTGCGCTGAGGAAATCAAATCCAGACAAATGATCATTCAAGATCCTAAAc 693
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 616 AGGCATTGCGTTGCGCTGAGGAAATCAAATCCAAACAAATGATCGTTCAAGATCCTAAAC 675
Query 694 atcatcatcat 704
|||||||||||
Sbjct 676 ATCATCATCAT 686
> Ahg483641 jgi|Araly1|483641|fgenesh2_kg.4__2701__AT2G45080.1
Length=691
Score = 560 bits (303), Expect = 5e-159
Identities = 565/688 (82%), Gaps = 31/688 (5%)
Strand=Plus/Plus
Query 55 ATTCTTTAACAATCTCTCCGAGGAAACTCCGGTCTGATCTTTACTCATACTCATACCAAA 114
||||| || | || ||||||||||| ||||| || || || ||||||||||| ||||||
Sbjct 26 ATTCTCTAGCGATTTCTCCGAGGAAGCTCCGATCAGACCTCTACTCATACTCTTACCAAG 85
Query 115 ACAATTCCAAGAC---ACCTCTGGTTATCTCTGTTCTATCGTCACTGATTGATCGAACTC 171
| | ||||| || |||||| || |||||||| || ||||| ||||| || || |||
Sbjct 86 ATGACTCCAACACAGTACCTCTAGTCATCTCTGTACTCTCGTCTCTGATCGAACGGACTT 145
Query 172 TGACTCGAAACGAGAGGATTAGCCGGAGAGCTTTGCCTTCCTCCGGCGCCGGTGGCAAAA 231
|| || | |||||||| || |||| | || | || ||| | ||| || |
Sbjct 146 TGGCTAGGAACGAGAGAATCAGCC-G-GA-----G-----CTACGGTGGTTTTGGTAAGA 193
Query 232 CTCAG-ATCTTTGATTGCCGAGAAATCCCTGATATGACCATCCAGTCATACCTAGGGAGA 290
| | | ||||||||||||| || || ||||||||||| || || |||||||||| |||
Sbjct 194 CAC-GTGTCTTTGATTGCCGGGAGATTCCTGATATGACTATTCAATCATACCTAGAGAGG 252
Query 291 ATTTTCCGGTACACTAAAGCCGGTCCTTCGGTTTACGTGGTGGCTTATGTCTACATTGAC 350
||||||||||| || ||||||||||| ||||||||||| || || ||||| ||||||||
Sbjct 253 ATTTTCCGGTATACCAAAGCCGGTCCATCGGTTTACGTCGTTGCCTATGTATACATTGAT 312
Query 351 CGGTTCTGTCA-AACCAATCC-CGGTTTTAGAATCAGTCTCACTAATGTACATCGTCTAC 408
||||||||||| || || || ||||| ||||||||| | || |||||||||||||| |
Sbjct 313 CGGTTCTGTCAGAA-TAA-CCAAGGTTTCAGAATCAGTTTAACCAATGTACATCGTCTCC 370
Query 409 TCATCACTACCATCATGATCGCTTCTAAATACGTCGAAGATTTGAACTATAGGAATTCAT 468
| ||||| || |||||||||||||| ||||||||||||||| |||||||||| || || |
Sbjct 371 TTATCACAACTATCATGATCGCTTCCAAATACGTCGAAGATATGAACTATAGAAACTCGT 430
Query 469 ATTTTGCGAAAGTAGGTGGACTAGAGACAGAGGATTTGAATAAGTTAGAGTTAGAGTTTC 528
| |||||||||||||| ||| |||||||||| |||||||| || || || | ||| |||
Sbjct 431 ACTTTGCGAAAGTAGGAGGATTAGAGACAGAAGATTTGAACAATTTGGAACTGGAG-TTC 489
Query 529 -TGTTCTTGATGGGATTTAAGCTACATGTGAATGTGAGTGTGTTCGAGAGTTATTGTTGT 587
|||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||
Sbjct 490 TTGTTCTTGATGGGATTTAAGTTGCATGTGAATGTGAGTGTGTTCGAGAGTTACTGTTGT 549
Query 588 CATCTTGAAAGAGAGGTTAGCTTT-GGAGGAGGTTATCAGATCGAGAAGGCATTGCGTTG 646
|||||||||||||| ||||| | | |||||||||||||||||||| |||||||| |||||
Sbjct 550 CATCTTGAAAGAGAAGTTAG-TATCGGAGGAGGTTATCAGATCGAAAAGGCATTACGTTG 608
Query 647 CGCTGAGGAAATCAAATCCAGACAAATGATCATTCAAGATCCTAAAcatcatcatcatca 706
|||||||||||||||||| |||||||| | ||||||||||||||||||||||||| ||
Sbjct 609 CGCTGAGGAAATCAAATCTAGACAAAT--TG-TTCAAGATCCTAAACATCATCATCACCA 665
Query 707 tcatcaGCTTGCTCGAATCTTGTTGTAG 734
||| | || |||||||||||||||||
Sbjct 666 TCA--ATTTT-CTCGAATCTTGTTGTAG 690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27029148153
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5