BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60570.1
Length=759
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324506 jgi|Araly1|324506|fgenesh1_pm.C_scaffold_5002050 704 0.0
> Ahg324506 jgi|Araly1|324506|fgenesh1_pm.C_scaffold_5002050
Length=795
Score = 704 bits (381), Expect = 0.0
Identities = 419/438 (96%), Gaps = 0/438 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTCCTCATCTCTCAAATGTTTTTCTTTTATCGTTGTTCTTACAACTTTCTTTGCA 60
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1 ATGGCTTCCTCATCTCTCAAATGTTTGTCTTCTATCGTTGTTCTTACAACTTTCTTTGCA 60
Query 61 ATCTCATTGAAGCCATGTTATTGCCACAATAAAACCCACTGGAACACCGCCGGCATCACG 120
|||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCTCATTGAAGCCTTGTTCTGGCCACAATAAAACCCACTGGAACACCGCCGGCATCACT 120
Query 121 TGGTATGGCGACCGAGAAGGTCCTGGCACCACAGGAGGAGCTTGTGGATATGGTGATGCA 180
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 TGGTATGGCGACCGCGAAGGTCCTGGCAGCACAGGAGGAGCTTGTGGATATGGTGATGCA 180
Query 181 GTGGCAAAACACCCGTACAGATGTATGGTTTCAGCCGGAGGACCTTCATTGTTCAAAGAC 240
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTGGCAAAGCACCCGTACAGATGTATGGTTTCAGCCGGAGGACCTTCATTGTTCAAAGAT 240
Query 241 GGAAAGGGTTGTGGGGCTTGTTACAGGCTTAAATGCGACCATCCGTTGTGCACGAAAAAG 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGAAAGGGTTGTGGGGCATGTTACAGGCTTAAATGCGACCATCCGTTGTGCACGAAAAAG 300
Query 301 CCGATCAAGGTGATGATATCGGATGAGTGTCCCGGCTGCACGAAGGAGTCTGTCCATTTT 360
||||| |||||||||||||||||||||||||||||||| ||||||||| |||| ||||||
Sbjct 301 CCGATTAAGGTGATGATATCGGATGAGTGTCCCGGCTGTACGAAGGAGGCTGTTCATTTT 360
Query 361 GATCTTAGCGGTAAGGCCTTTGGTGCATTGGCCAAACGTGGCAAGGGAGATCAACTACGC 420
|||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 361 GATCTTAGTGGCAAGGCCTTTGGTGCATTGGCCAAACGAGGCAAGGGCGATCAACTACGC 420
Query 421 AACCTTGGAGAACTAAAA 438
||||||||||||||||||
Sbjct 421 AACCTTGGAGAACTAAAA 438
Score = 508 bits (275), Expect = 2e-143
Identities = 305/320 (95%), Gaps = 0/320 (0%)
Strand=Plus/Plus
Query 440 CTATGATCGCTATCCATGTCGACGCCGGAGCAAATCCTTACTACATGTCATTCGCGGTTA 499
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 476 CTAAGATCGCTATCCATGTCGACTCCGGAGCAAATCCTTACTACATGTCATTCGCAGTTA 535
Query 500 AGTTTGCAAACGGTGATGGGAACTTCGCCTGCATTGAGGTCCAACCGGCCGGAGGACAGT 559
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||
Sbjct 536 AGTTTGCAAACGGTGATGGGAACTTCGCCTGCATCGAGGTCCAACCGGCAGGAGGAAAGT 595
Query 560 ATATGAAAATGGAGGAAATGAGATCCGCTGTTTGGAGACTAAGCCCTGGTGTTCCTTTGA 619
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 ATTTGAAAATGGAGGAAATGAGATCCGCTGTTTGGAGACTAAGCCCTGGTGTTCCTTTGA 655
Query 620 AAGGTCCGTTCAACATCAGGCTTACCTCCGCCGTGTCCGGTAAGAAGATCATTGCGAAAG 679
| ||||||||||||||||||||||||||||| || || |||||||||||| |||||||||
Sbjct 656 AGGGTCCGTTCAACATCAGGCTTACCTCCGCGGTCTCTGGTAAGAAGATCGTTGCGAAAG 715
Query 680 GCGTTATCCCGGAAAAGTGGAGTCCTGGTGCTATTTACCATTCTAAGGTTAACTTCCCCG 739
|||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 716 GCGTTATCCCTGAAAAGTGGAGCCCTGGTGCTATTTACCACTCTAAGGTTAACTTCCCCG 775
Query 740 TTCAAAGGAAGCAGAAATGA 759
||||||||||||||||||||
Sbjct 776 TTCAAAGGAAGCAGAAATGA 795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27982221078
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5