BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G60580.1 Length=1106 Score E Sequences producing significant alignments: (Bits) Value Ahg939100 jgi|Araly1|939100|scaffold_503291.1 1218 0.0 Ahg483645 jgi|Araly1|483645|fgenesh2_kg.4__2705__AT2G45120.1 62.1 9e-09 > Ahg939100 jgi|Araly1|939100|scaffold_503291.1 Length=940 Score = 1218 bits (659), Expect = 0.0 Identities = 856/944 (91%), Gaps = 41/944 (4%) Strand=Plus/Plus Query 49 ctctgttcttGTTATTGAAGATGGAGAGTTACAAGTGCAGGGTTTGCTTTAAGAGCTTCG 108 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CTCTGTTCTTGTTCTTGAAGATGGAGAGTTACAAGTGCAGGGTTTGCTTTAAGAGCTTCG 60 Query 109 TTAACGGAAAAGCTTTAGGTGGTCACATGAGATCTCACAT---GAGTAATTCA----CAT 161 |||| |||| |||||||||||||||||||||||||||||| |||| |||| || Sbjct 61 TTAATGGAAGAGCTTTAGGTGGTCACATGAGATCTCACATGCCGAGT-CTTCATGTTGAT 119 Query 162 G-AG--GAAGAACAAAGGCCGAGTCAACTCAGTTATGAGACTGAGTCCGATGTTTCTTCG 218 | || ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||| Sbjct 120 GAAGATGAAGAACAAAGGCCGAGTCAACTCAGTGATGAGACTGAGTCAGATGTTTCATCG 179 Query 219 TC-TGATC---CG---A-AG-TTTGCTTT---------T-A--CG-AG--CTCTGTTCTT 254 || | || | | || || ||| | | || || |||||||||| Sbjct 180 TCTTCTTCAGAGGAAAAGAGAAATGGTTTGAGAGAGAATGATCCGAAGTTCTCTGTTCTT 239 Query 255 CTTGAAGACGGTGAAAGCGAGAGCGAGTCGTCGAGGAATGTTATTAACCTGACTCGGAAA 314 |||||||| ||||||||||||| |||||| || |||||||||||||||||||| |||||| Sbjct 240 CTTGAAGATGGTGAAAGCGAGACCGAGTCTTCTAGGAATGTTATTAACCTGACCCGGAAA 299 Query 315 CGATCCAAGCGAACTCGGAAACTCGATTCGTTTGTAACCAAGAAGGTGAAAACGAGTCAA 374 ||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 300 CGATCTAAGCGAACTCGGAAACTCGATTCGTTTGTAGCGAAGAAGGTGAAAACGAGTCAA 359 Query 375 CTCGGATACAAGCCTGAGTCTGATCAAGAGCCTCCTCATAGCTCAGCTTCTGATACAACG 434 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 360 CTCGGTTACAAGCCTGAGTCTGATCACGAGCCTCCTCATAGCTCAGCTTCTGATACAACG 419 Query 435 ACGGAGGAAGATCTTGCCTTTTGTCTCATGATGCTCTCTCGAGATAAATGgaagaagaac 494 ||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 420 ACGGAAGAAGATCTAGCCTTTTGTCTCATGATGCTCTCGAGAGATAAATGGAAGAAGAAC 479 Query 495 aaaagtaataaagaagtagtggaagagatcgagacagaagaagaatcagaagGTTACAAC 554 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 480 AAAAGTAATAAAGAAGTAGTAGAAGAGATCGAGACAGAAGAAGAATCAGAAGGTTACAAC 539 Query 555 AAGATTAATCGAGCAACAACGAAAGGAAGATACAAGTGTGAGACCTGCGGGAAAGTGTTC 614 |||||||||||| |||||||||||| ||||||||||||||||| || |||||||||||| Sbjct 540 AAGATTAATCGAATAACAACGAAAGGGAGATACAAGTGTGAGACTTGTGGGAAAGTGTTC 599 Query 615 AAATCTTATCAAGCATTAGGTGGGCATAGAGCAAGTCATAAGAAGAACAGAGTAAGTAAC 674 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 AAATCTTATCAAGCATTAGGTGGGCATAGAGCAAGTCATAAGAAGAACAGAGTAAGTAAC 659 Query 675 AACAAAACAGAGCAACGAAGCGAAACAGAGTATGATAATGTTGTTGTTGTTGCT-A-A-G 731 || || ||||||||||||||||||||||||||||||||||||||||||||||| | | | Sbjct 660 AA-AA--CAGAGCAACGAAGCGAAACAGAGTATGATAATGTTGTTGTTGTTGCTGAGAAG 716 Query 732 AGAATCCATGAATGTCCGATTTGTCTAAGAGTTTTCGCATCGGGACAAGCACTTGGAGGT 791 |||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| Sbjct 717 AGAATCCATGAATGTCCGATATGTCTTAGAGTTTTTGCATCGGGACAAGCACTTGGAGGT 776 Query 792 CACAAAAGATCTCACGGGGTAGGGAATTTATCTGTGAATCAACAACGTCGAGTTCATAGA 851 || || |||||||||||| | |||||||| ||||||||||| || | || |||||||||| Sbjct 777 CATAAGAGATCTCACGGGATTGGGAATTTGTCTGTGAATCAGCATCATCAAGTTCATAGA 836 Query 852 AACGAGTCTGTGAAACAGAGGATGATAGATCTTAATCTTCCTGCACCAACCGAAGAAGAC 911 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 837 AACGAGTCTGTGAAACAGAGGATGATAGATCTTAATCTTCCTGCACCAACCGAAGAAGAC 896 Query 912 GAAGTCTCTGTGGTGTTTCAATGAATGCTGAATAAAGGTAACAG 955 || ||||||||||||||||||||||||||||||||||||||||| Sbjct 897 GATGTCTCTGTGGTGTTTCAATGAATGCTGAATAAAGGTAACAG 940 > Ahg483645 jgi|Araly1|483645|fgenesh2_kg.4__2705__AT2G45120.1 Length=1116 Score = 62.1 bits (33), Expect = 9e-09 Identities = 38/40 (95%), Gaps = 1/40 (3%) Strand=Plus/Plus Query 1067 TTTTATTTTAAATGCAAAGGAGGCTACTTTTACATGTTCT 1106 |||||| || |||||||||||||||||||||||||||||| Sbjct 1067 TTTTATGTT-AATGCAAAGGAGGCTACTTTTACATGTTCT 1105 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41210873277 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5