BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60580.1
Length=1106
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939100 jgi|Araly1|939100|scaffold_503291.1 1218 0.0
Ahg483645 jgi|Araly1|483645|fgenesh2_kg.4__2705__AT2G45120.1 62.1 9e-09
> Ahg939100 jgi|Araly1|939100|scaffold_503291.1
Length=940
Score = 1218 bits (659), Expect = 0.0
Identities = 856/944 (91%), Gaps = 41/944 (4%)
Strand=Plus/Plus
Query 49 ctctgttcttGTTATTGAAGATGGAGAGTTACAAGTGCAGGGTTTGCTTTAAGAGCTTCG 108
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTGTTCTTGTTCTTGAAGATGGAGAGTTACAAGTGCAGGGTTTGCTTTAAGAGCTTCG 60
Query 109 TTAACGGAAAAGCTTTAGGTGGTCACATGAGATCTCACAT---GAGTAATTCA----CAT 161
|||| |||| |||||||||||||||||||||||||||||| |||| |||| ||
Sbjct 61 TTAATGGAAGAGCTTTAGGTGGTCACATGAGATCTCACATGCCGAGT-CTTCATGTTGAT 119
Query 162 G-AG--GAAGAACAAAGGCCGAGTCAACTCAGTTATGAGACTGAGTCCGATGTTTCTTCG 218
| || ||||||||||||||||||||||||||| ||||||||||||| |||||||| |||
Sbjct 120 GAAGATGAAGAACAAAGGCCGAGTCAACTCAGTGATGAGACTGAGTCAGATGTTTCATCG 179
Query 219 TC-TGATC---CG---A-AG-TTTGCTTT---------T-A--CG-AG--CTCTGTTCTT 254
|| | || | | || || ||| | | || || ||||||||||
Sbjct 180 TCTTCTTCAGAGGAAAAGAGAAATGGTTTGAGAGAGAATGATCCGAAGTTCTCTGTTCTT 239
Query 255 CTTGAAGACGGTGAAAGCGAGAGCGAGTCGTCGAGGAATGTTATTAACCTGACTCGGAAA 314
|||||||| ||||||||||||| |||||| || |||||||||||||||||||| ||||||
Sbjct 240 CTTGAAGATGGTGAAAGCGAGACCGAGTCTTCTAGGAATGTTATTAACCTGACCCGGAAA 299
Query 315 CGATCCAAGCGAACTCGGAAACTCGATTCGTTTGTAACCAAGAAGGTGAAAACGAGTCAA 374
||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 300 CGATCTAAGCGAACTCGGAAACTCGATTCGTTTGTAGCGAAGAAGGTGAAAACGAGTCAA 359
Query 375 CTCGGATACAAGCCTGAGTCTGATCAAGAGCCTCCTCATAGCTCAGCTTCTGATACAACG 434
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 360 CTCGGTTACAAGCCTGAGTCTGATCACGAGCCTCCTCATAGCTCAGCTTCTGATACAACG 419
Query 435 ACGGAGGAAGATCTTGCCTTTTGTCTCATGATGCTCTCTCGAGATAAATGgaagaagaac 494
||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 ACGGAAGAAGATCTAGCCTTTTGTCTCATGATGCTCTCGAGAGATAAATGGAAGAAGAAC 479
Query 495 aaaagtaataaagaagtagtggaagagatcgagacagaagaagaatcagaagGTTACAAC 554
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 480 AAAAGTAATAAAGAAGTAGTAGAAGAGATCGAGACAGAAGAAGAATCAGAAGGTTACAAC 539
Query 555 AAGATTAATCGAGCAACAACGAAAGGAAGATACAAGTGTGAGACCTGCGGGAAAGTGTTC 614
|||||||||||| |||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 540 AAGATTAATCGAATAACAACGAAAGGGAGATACAAGTGTGAGACTTGTGGGAAAGTGTTC 599
Query 615 AAATCTTATCAAGCATTAGGTGGGCATAGAGCAAGTCATAAGAAGAACAGAGTAAGTAAC 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAATCTTATCAAGCATTAGGTGGGCATAGAGCAAGTCATAAGAAGAACAGAGTAAGTAAC 659
Query 675 AACAAAACAGAGCAACGAAGCGAAACAGAGTATGATAATGTTGTTGTTGTTGCT-A-A-G 731
|| || ||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 660 AA-AA--CAGAGCAACGAAGCGAAACAGAGTATGATAATGTTGTTGTTGTTGCTGAGAAG 716
Query 732 AGAATCCATGAATGTCCGATTTGTCTAAGAGTTTTCGCATCGGGACAAGCACTTGGAGGT 791
|||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 717 AGAATCCATGAATGTCCGATATGTCTTAGAGTTTTTGCATCGGGACAAGCACTTGGAGGT 776
Query 792 CACAAAAGATCTCACGGGGTAGGGAATTTATCTGTGAATCAACAACGTCGAGTTCATAGA 851
|| || |||||||||||| | |||||||| ||||||||||| || | || ||||||||||
Sbjct 777 CATAAGAGATCTCACGGGATTGGGAATTTGTCTGTGAATCAGCATCATCAAGTTCATAGA 836
Query 852 AACGAGTCTGTGAAACAGAGGATGATAGATCTTAATCTTCCTGCACCAACCGAAGAAGAC 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AACGAGTCTGTGAAACAGAGGATGATAGATCTTAATCTTCCTGCACCAACCGAAGAAGAC 896
Query 912 GAAGTCTCTGTGGTGTTTCAATGAATGCTGAATAAAGGTAACAG 955
|| |||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GATGTCTCTGTGGTGTTTCAATGAATGCTGAATAAAGGTAACAG 940
> Ahg483645 jgi|Araly1|483645|fgenesh2_kg.4__2705__AT2G45120.1
Length=1116
Score = 62.1 bits (33), Expect = 9e-09
Identities = 38/40 (95%), Gaps = 1/40 (3%)
Strand=Plus/Plus
Query 1067 TTTTATTTTAAATGCAAAGGAGGCTACTTTTACATGTTCT 1106
|||||| || ||||||||||||||||||||||||||||||
Sbjct 1067 TTTTATGTT-AATGCAAAGGAGGCTACTTTTACATGTTCT 1105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41210873277
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5