BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G60590.3

Length=1215
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939103 jgi|Araly1|939103|scaffold_503294.1                        684    0.0  


> Ahg939103 jgi|Araly1|939103|scaffold_503294.1
Length=512

 Score =  684 bits (370),  Expect = 0.0
 Identities = 380/385 (99%), Gaps = 0/385 (0%)
 Strand=Plus/Plus

Query  831   GTTACTTCTCTTCGGATCCCAATCTGGCCTTCTCGCTTCTCTCCAGCCCCAGATTCCTTT  890
             |||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||
Sbjct  107   GTTACTTCTCTTCGGATCCCAATCTGGCCTACTCGCTTCTCTCCAACCCCAGCTTCCTTT  166

Query  891   CCTCTCGTCCGCTGTTATCCTCTTCCCGTACTTCATTCTCCTTGCTGTTCAGACATTAAC  950
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  167   CCTCTCGTCCGCTGTTATCCTCTTCCCGTACTTCATTCTCCTTGCTGTTCAGACATTAAC  226

Query  951   AGAGATCCTCACATGGCACTGGCAATCACCGGTCTGGCTAGTCACACCAGTTGTCTACGA  1010
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  227   AGAGATCCTCACATGGCACTGGCAATCACCGGTCTGGCTAGTCACACCAGTTGTCTACGA  286

Query  1011  GGCTTACCGAATCTTGCAACTGATGAGAGGGTTGACACTTAGTGCAGAGGTCAACGCACC  1070
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  287   GGCTTACCGAATCTTGCAACTGATGAGAGGGTTGACACTTAGTGCAGAGGTCAACGCACC  346

Query  1071  GGTTTGGGTGGTTCATATGCTTCGTGGGCTTGTCTCTTGGTGGGTATTGATCTTGGGAAT  1130
              ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  347   CGTTTGGGTGGTTCATATGCTTCGTGGGCTTGTCTCTTGGTGGGTATTGATCTTAGGAAT  406

Query  1131  GCAACTCATGAGAGTTGCTTGGTTTGCTGGTTTTGCATCTAGAACAACAACAGGTCAGCA  1190
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  407   GCAACTCATGAGAGTTGCTTGGTTTGCTGGTTTTGCATCTAGAACAACAACAGGTCAGCA  466

Query  1191  ACCACAATCTGTTGCTTCTAAGTAA  1215
             |||||||||||||||||||||||||
Sbjct  467   ACCACAATCTGTTGCTTCTAAGTAA  491



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 45366271230


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5