BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60620.1
Length=1689
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324510 jgi|Araly1|324510|fgenesh1_pm.C_scaffold_5002054 822 0.0
Ahg923282 jgi|Araly1|923282|scaffold_104563.1 364 9e-100
Ahg893685 jgi|Araly1|893685|Al_scaffold_0006_1681 333 3e-90
Ahg923388 jgi|Araly1|923388|scaffold_104669.1 165 1e-39
> Ahg324510 jgi|Araly1|324510|fgenesh1_pm.C_scaffold_5002054
Length=1113
Score = 822 bits (445), Expect = 0.0
Identities = 487/508 (96%), Gaps = 0/508 (0%)
Strand=Plus/Plus
Query 370 AGGAGGAACACAACATAGATCAAGAATTGCAAAATGTTGAAGAAGATTCGAGTTTAGATG 429
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 116 AGGAGGAACACAACAGAGATCAAGAATTGCAAAATGTTGAAGACGATTCGAGTTTAGATG 175
Query 430 ATCAGAAGCAAAAATCTAGAAGCCAGTTTAAGAAAAGAGTAACTTTCGGTCTAGGAATTG 489
|||||||||| ||||||||||||||||||||||||||||| | ||| ||| |||||||||
Sbjct 176 ATCAGAAGCAGAAATCTAGAAGCCAGTTTAAGAAAAGAGTGATTTTTGGTTTAGGAATTG 235
Query 490 GATTGTCTGTAGGAGGTATTGTATTAGCTGGAGGATGGGTATTCACAGTAGCAGTAGCAG 549
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 GATTGTCTGTTGGAGGTATTGTATTAGCTGGAGGATGGGTATTCACAGTAGCAGTAGCAG 295
Query 550 CTGCGGTTCTTCTAAGTGCCCGGGAATATTTCGAGCTGGTGAGAAGTAAAGGAATTGCTC 609
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CTGCAGTTCTTCTAAGTGCCCGGGAATATTTCGAGCTGGTGAGAAGTAAAGGAATTGCTC 355
Query 610 AAGGAATGACACCTCCTCCACGATATCTTTCTAGAGTCTGCTCCATTATCTGTGCTCTTA 669
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 356 AAGGAATGACACCTCCTCCACGATATCTTTCTAGAGTCTGCTCGGTTATATGTGCTCTTA 415
Query 670 TGCCCATACTTACATTGTATTTTGGTCATATAGATATCTCGATAACTTCAGCGGCGTTTG 729
||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct 416 TGCCCATACTTACATTGTATTTTGGTCATATAGATATCTCGGTGACATCAGCGGCGTTTG 475
Query 730 TTGTTGCAATGGCATTGTTGTTACAGAGAGGAAACCCGCGTTTTTCTCAGCTGAGTAGTA 789
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 476 TTGTTGCAATGGCATTGTTGTTACAAAGAGGAAACCCGCGTTTTTCTCAGCTGAGTAGTA 535
Query 790 CGATGTTTGGCCTGTTTTACTGTGGATATCTTCCTTGTTTCTGGGTTAAGCTACGTTGTG 849
| |||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||
Sbjct 536 CAATGTTTGGCCTGTTTTACTGTGGATATCTTCCTTGTTTCTGGATAAAGCTACGGTGTG 595
Query 850 GTCTTACTGCTCCAGTTCTAAACACCGG 877
||||||||||||||||||||||| ||||
Sbjct 596 GTCTTACTGCTCCAGTTCTAAACTCCGG 623
Score = 771 bits (417), Expect = 0.0
Identities = 443/456 (97%), Gaps = 0/456 (0%)
Strand=Plus/Plus
Query 876 GGAATTGGGAGAAGCTGGCCTACTATCCTCGGCGGCCAAGCACATTGGACAGTTGGACTT 935
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 658 GGAATTGGAAGAAGCTGGCCTACTATCCTCGGTGGCCAAGCACATTGGACAGTTGGACTA 717
Query 936 GTTGCTATATTGATTTCTTTCTGTGGTATAATTGCCTCAGACACGTTTGCTTTTCTTGGT 995
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 718 GTTGCTATATTGATTTCTTTCTGCGGTATAATTGCCTCAGACACGTTTGCTTTTCTTGGT 777
Query 996 GGCAAGGCATTTGGTAGAACTCCTCTTATTAGCATTAGTCCAAAGAAGACATGGGAAGGA 1055
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GGCAAGGCATTTGGTAAAACTCCTCTTATTAGCATTAGTCCAAAGAAGACATGGGAAGGA 837
Query 1056 GCTTTTGCAGGACTTGTTGGTTGTATTTCCATTACCATTTTACTCTCCAAATCGTTGTCC 1115
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GCTCTTGCAGGACTTGTTGGTTGTATTTCCATTACCATTTTACTCTCCAAATCGTTGTCC 897
Query 1116 TGGCCTCAATCTCTTGTCAGCACCATAGCTTTTGGAGTTCTTAACTTCTTCGGATCGGTC 1175
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 898 TGGCCTCATTCTCTTGTCAGCACTATAGCTTTTGGAGTTCTTAACTTCTTCGGATCTGTC 957
Query 1176 TTTGGTGACTTAACTGAGTCAATGATCAAACGTGATGCGGGTGTCAAAGACTCCGGCTCA 1235
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 958 TTTGGTGACTTAACGGAGTCAATGATCAAACGTGATGCGGGTGTCAAAGACTCTGGCTCA 1017
Query 1236 CTCATCCCTGGACACGGTGGCATATTGGACAGAGTTGATAGTTACATTTTCACTGGTGCA 1295
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CTCATCCCTGGACATGGTGGTATATTGGACAGAGTTGATAGTTACATTTTCACTGGTGCA 1077
Query 1296 TTAGCCTACTCGTTCGTAAGACTTCATGGAGTTTGA 1331
||||||||||||||||||||||||||||||||||||
Sbjct 1078 TTAGCCTACTCGTTCGTAAGACTTCATGGAGTTTGA 1113
Score = 152 bits (82), Expect = 8e-36
Identities = 90/94 (96%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 132 ATGGCGCCTTTTGTTGAAGTCTGTAGGTATAAGCCATTACCGCTTTCATTGAGCTCTCTC 191
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGCGCCTTTTGTTGAAGTCTGTAGGTATAAGCCATTACCGCTCTCATTGAGCTCTCTC 60
Query 192 TGTACATGCCCTTGCCGTTCCTCTCCAAGGAAAT 225
|||||||| ||||||||||| |||||||| ||||
Sbjct 61 TGTACATGTCCTTGCCGTTCTTCTCCAAGAAAAT 94
> Ahg923282 jgi|Araly1|923282|scaffold_104563.1
Length=403
Score = 364 bits (197), Expect = 9e-100
Identities = 323/380 (85%), Gaps = 23/380 (6%)
Strand=Plus/Plus
Query 111 CTTTCCGATTACCGGATTCCAATGGCGCCTTTTGTTGAAGTCTGTAGGTATAAGCCAT-T 169
||||| |||| ||||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct 1 CTTTCTGATT-TTGGATTTCAATGGCGCCTTTTGTTGAAGTCTGTAGGTATAAGCC-TGT 58
Query 170 ACCGCTTTCATTGAGCTCTCTCTGTACATGCCCTTGCCGTTCCTCTCCA-AGGAAATATC 228
||| || ||||||||||||||||||||||| |||||||||||| || || || |||| ||
Sbjct 59 ACCCCTCTCATTGAGCTCTCTCTGTACATGTCCTTGCCGTTCCACT-CAGAGAAAATCTC 117
Query 229 TAATTCTTCCTCAATTCTCTGAAAAG----T--A-------C-C--CGAAACC--ATTGT 270
| ||||||| || |||||||||||| | | | | ||| || | |
Sbjct 118 TTCTTCTTCCCCATTTCTCTGAAAAGTATTTGAATTTGCGTCTCGTCGATCCCAAACCAT 177
Query 271 TGTCTCATTCTCGCTTTACTCCGATTTCTGTTAACCGGAGAGTTATCACGGCCGTTGCTC 330
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
Sbjct 178 TGTCTCATTCTCGCTTTAATTGGATTTCTGTTAACCGGAGAGTTATCACGGCCGTTGCAC 237
Query 331 GAGCTGAATCAAATCAAATTGGTGACGATGCCAACTCAAAGGAGGAACACAACATAGATC 390
||||||||||||||||||||||||| |||| ||||||||||||||||||| || |||||
Sbjct 238 GAGCTGAATCAAATCAAATTGGTGATGATGGCAACTCAAAGGAGGAACACGGCAGAGATC 297
Query 391 AAGAATTGCAAAATGTTGAAGAAGATTCGAGTTTAGATGATCAGAAGCAAAAATCTAGAA 450
|||||||||||||||||||||||||||||||||| ||| |||| |||| || |||||||
Sbjct 298 AAGAATTGCAAAATGTTGAAGAAGATTCGAGTTTCGATTCTCAGGAGCAGAAGTCTAGAA 357
Query 451 GCCAGTTTAAGAAAAGAGTA 470
||||||||||||||||||||
Sbjct 358 GCCAGTTTAAGAAAAGAGTA 377
> Ahg893685 jgi|Araly1|893685|Al_scaffold_0006_1681
Length=363
Score = 333 bits (180), Expect = 3e-90
Identities = 304/360 (84%), Gaps = 24/360 (7%)
Strand=Plus/Plus
Query 132 ATGGCGCCTTTTGTTGAAGTCTGTAGGTATAAGCCAT-TACCGCTTTCATTGAGCTCTCT 190
||||||||||||||||||||||||||||||||||| | |||| || ||||||||||||||
Sbjct 1 ATGGCGCCTTTTGTTGAAGTCTGTAGGTATAAGCC-TGTACCCCTCTCATTGAGCTCTCT 59
Query 191 CTGTACATGCCCTTGCCGTTCCTCTCCA-AGGAAATATCTAATTCTTC-CTCAATTCTCT 248
||||||||| | |||||||||| || || || |||| ||| |||||| | || ||||||
Sbjct 60 CTGTACATGTCATTGCCGTTCCACT-CAGAGAAAATCTCTTCTTCTTCAC-CATTTCTCT 117
Query 249 GAAAAG----T--A-------C-C--CGAAACC--ATTGTTGTCTCATTCTCGCTTTACT 290
|||||| | | | | ||| || | |||||||||||||||| || |
Sbjct 118 GAAAAGTATTTGAATTTGCGTCTCGTCGATCCCAAACCATTGTCTCATTCTCGCTGTAAT 177
Query 291 CCGATTTCTGTTAACCGGAGAGTTATCACGGCCGTTGCTCGAGCTGAATCAAATCAAATT 350
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 178 TGGATTTCTGTTAAACGGAGAGTTATCACGGCCGTTGCACGAGCTGAATCAAATCAAATT 237
Query 351 GGTGACGATGCCAACTCAAAGGAGGAACACAACATAGATCAAGAATTGCAAAATGTTGAA 410
||||| |||| ||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 238 GGTGATGATGGCAACTCAAAGGAGGAACACGGCAGAGATCAAGAATTGCAAAATGTTGAA 297
Query 411 GAAGATTCGAGTTTAGATGATCAGAAGCAAAAATCTAGAAGCCAGTTTAAGAAAAGAGTA 470
|||||||||||||| ||| |||| |||| || |||||||||||||||||||||||||||
Sbjct 298 GAAGATTCGAGTTTCGATTCTCAGGAGCAGAAGTCTAGAAGCCAGTTTAAGAAAAGAGTA 357
> Ahg923388 jgi|Araly1|923388|scaffold_104669.1
Length=576
Score = 165 bits (89), Expect = 1e-39
Identities = 197/245 (80%), Gaps = 23/245 (9%)
Strand=Plus/Plus
Query 158 GTATAAGCCAT-TACCGCTTTCATTGAGCTCTCTCTGTACATGCCCTTGCCGTTCCTCTC 216
||||||||| | |||| || |||||||| |||||||||||||| |||||||||||| ||
Sbjct 45 GTATAAGCC-TGTACCCCTCTCATTGAGTTCTCTCTGTACATGTCCTTGCCGTTCCACT- 102
Query 217 CA-AGGAAATATCTAATTCTTCCTCAATTCTCTGAAAAG----T--A-------C-C--C 259
|| || |||| ||| ||||||| || |||||||||||| | | | | |
Sbjct 103 CAGAGAAAATCTCTTCTTCTTCCCCATTTCTCTGAAAAGTATTTGAATTTGCGTCTCGTC 162
Query 260 GAAACC--ATTGTTGTCTCATTCTCGCTTTACTCCGATTTCTGTTAACCGGAGAGTTATC 317
|| || | |||||||||||||| | || | |||||||||||||||||||||||||
Sbjct 163 GATCCCAAACCATTGTCTCATTCTCGATGTAATTGGATTTCTGTTAACCGGAGAGTTATC 222
Query 318 ACGGCCGTTGCTCGAGCTGAATCAAATCAAATTGGTGACGATGCCAACTCAAAGGAGGAA 377
||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||| |
Sbjct 223 ACGGCCGTTGCACGAGCTGAATCAAATCAAATTGGTGATGATGGCAACTCAAAGGAGCA- 281
Query 378 CACAA 382
|||||
Sbjct 282 CACAA 286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63344077435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5